genome.fa.s4.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  205  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63603850--63603999	54	2.8	54	81	5	187	30	8	21	40	1.83
63609183--63609220	15	2.4	16	82	4	51	57	2	10	28	1.45
63611289--63611478	105	1.8	105	83	2	256	36	16	20	26	1.94
63611607--63611691	39	2.2	40	80	6	93	32	11	21	34	1.89
63612594--63612619	3	8.7	3	100	0	52	0	30	0	69	0.89
63614050--63614120	32	2.2	33	82	2	90	23	18	28	29	1.98
63619171--63619203	16	2.1	16	94	0	57	27	9	33	30	1.88
63621667--63621737	33	2.2	33	84	2	99	23	19	26	29	1.98
63629538--63629607	33	2.2	32	81	2	77	27	20	25	27	1.99
63642426--63642560	40	3.4	41	85	5	188	25	26	23	23	2.00
63643989--63644058	27	2.6	27	90	2	113	30	25	14	30	1.95
63645506--63645636	30	4.5	30	86	8	171	28	25	13	32	1.94
63645505--63645636	58	2.3	58	85	4	176	28	26	13	31	1.94
63653450--63653580	30	4.5	30	86	8	171	28	25	13	32	1.94
63653449--63653580	58	2.3	58	85	4	176	28	26	13	31	1.94
63660661--63660824	71	2.3	71	97	0	310	18	28	18	34	1.95
63660661--63660858	71	2.8	70	90	3	249	20	28	17	32	1.96
63665598--63665779	78	2.3	81	85	6	248	25	27	22	24	2.00
63665577--63665779	40	5.1	40	83	9	247	25	27	22	24	2.00
63673506--63673582	21	3.7	21	68	3	57	7	2	38	50	1.45
63674470--63674583	37	3.1	37	82	2	131	14	44	14	27	1.83
63676159--63676195	14	2.5	15	91	8	67	54	0	10	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63677795--63678210	16	26.0	16	68	17	172	46	15	2	35	1.59
63677855--63678179	46	6.8	46	87	7	461	47	14	2	35	1.59
63677791--63678195	97	3.9	111	87	8	472	47	14	2	35	1.58
63677984--63678054	21	3.2	21	68	14	61	47	12	2	36	1.56
63677887--63678180	97	3.0	97	96	0	543	47	14	2	35	1.58
63677782--63678214	9	48.7	9	67	18	133	46	15	2	35	1.59
63679974--63680181	40	5.2	40	85	2	258	25	26	22	25	2.00
63686631--63686760	40	3.2	40	82	4	165	23	24	28	23	2.00
63697436--63697565	40	3.2	40	82	4	165	23	24	28	23	2.00
63700496--63700703	40	5.2	40	83	2	240	26	27	21	25	1.99
63705008--63705099	40	2.3	40	88	0	130	21	20	25	32	1.98
63706598--63706667	27	2.5	28	95	2	124	28	14	27	30	1.95
63706598--63706679	27	3.0	27	85	8	78	29	15	24	30	1.96
63714404--63714473	27	2.5	28	95	2	124	28	14	27	30	1.95
63714404--63714485	27	3.0	27	85	8	78	29	15	24	30	1.96
63715903--63716037	40	3.4	40	84	3	175	23	22	26	26	2.00
63724826--63725038	37	5.7	37	80	10	229	23	23	28	24	2.00
63724826--63725038	74	2.8	74	86	7	272	23	23	28	24	2.00
63724826--63725038	76	2.8	75	83	10	267	23	23	28	24	2.00
63733979--63734127	80	1.9	80	81	2	183	22	30	24	22	1.99
63734020--63734127	40	2.7	38	85	8	128	21	29	25	23	1.99
63742090--63742238	80	1.9	80	81	2	183	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63742131--63742238	40	2.7	38	85	8	128	21	29	25	23	1.99
63744294--63744328	2	17.5	2	100	0	70	51	0	0	48	1.00
63744941--63744999	23	2.6	23	97	0	109	37	0	62	0	0.95
63744941--63744999	17	3.4	18	88	6	86	37	0	62	0	0.95
63744942--63744996	6	9.3	6	94	4	94	34	0	65	0	0.93
63745231--63745379	57	2.6	57	80	7	158	32	18	18	30	1.95
63748788--63748915	47	2.7	48	81	9	149	24	25	19	30	1.98
63749736--63749785	25	2.0	25	100	0	100	52	0	28	20	1.47
63755617--63755711	25	3.8	25	91	0	145	24	15	10	49	1.76
63755636--63755698	12	5.1	12	69	7	54	23	14	14	47	1.80
63756002--63756027	2	13.0	2	100	0	52	50	0	0	50	1.00
63756548--63756812	45	6.0	45	87	2	367	24	20	27	27	1.99
63756747--63756841	41	2.3	43	78	12	99	28	18	28	24	1.98
63763328--63763552	47	4.8	47	79	9	212	22	30	19	28	1.98
63767082--63767131	24	2.1	24	100	0	100	60	4	4	32	1.34
63767677--63767751	39	1.9	39	83	5	98	26	30	13	29	1.94
63774925--63775040	29	4.0	29	80	4	119	29	14	29	26	1.95
63774938--63775049	58	1.9	58	83	3	145	27	15	30	26	1.96
63779295--63779408	29	4.0	28	80	4	120	27	14	30	28	1.95
63779693--63779745	26	2.1	25	82	10	63	47	18	16	16	1.83
63782368--63782497	40	3.3	39	76	8	136	23	27	23	24	2.00
63782384--63782535	40	3.8	40	78	6	148	22	26	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63782384--63782533	80	1.9	80	83	8	198	22	26	24	27	1.99
63789591--63789720	40	3.3	39	76	8	136	23	27	23	24	2.00
63789607--63789758	40	3.8	40	78	6	148	22	26	23	27	1.99
63789607--63789756	80	1.9	80	83	8	198	22	26	24	27	1.99
63792616--63792714	28	3.5	29	82	6	114	28	15	26	30	1.96
63796249--63796322	28	2.6	29	82	4	87	28	17	25	28	1.98
63797716--63797936	46	4.7	46	77	6	185	28	20	28	23	1.99
63797716--63797975	94	2.8	94	79	5	233	29	20	27	23	1.98
63799092--63799130	21	1.9	21	94	5	71	10	38	30	20	1.86
63800840--63801071	48	4.8	47	89	5	290	25	29	17	27	1.97
63802038--63802089	27	2.0	27	92	3	88	40	19	15	25	1.90
63808002--63808246	49	4.9	50	79	7	266	25	17	26	29	1.98
63808005--63808246	100	2.5	97	83	6	283	25	18	26	29	1.98
63811252--63811410	27	5.9	27	80	11	175	33	20	25	20	1.97
63811270--63811413	54	2.7	54	92	2	236	34	22	25	18	1.96
63813008--63813114	26	4.2	26	95	1	189	35	26	7	30	1.84
63813447--63813625	48	3.7	48	91	0	286	28	32	16	22	1.96
63816005--63816035	14	2.2	14	94	0	53	38	51	3	6	1.44
63821368--63821426	30	2.0	30	83	6	75	47	13	6	32	1.69
63823357--63823457	28	3.5	28	86	6	114	29	13	26	29	1.94
63831311--63831411	28	3.5	28	86	6	114	29	13	26	29	1.94
63837557--63837613	29	2.0	29	82	6	71	36	14	17	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63842269--63842370	50	2.0	50	92	3	170	19	13	31	35	1.91
63842380--63842428	23	2.1	23	100	0	98	46	16	4	32	1.65
63862403--63862431	14	2.0	15	93	6	51	27	0	20	51	1.47
63863776--63863812	18	2.0	19	85	15	51	45	13	13	27	1.81
63870084--63870283	56	3.6	56	92	0	319	26	12	25	36	1.91
63871907--63871969	31	2.0	32	84	9	85	49	4	0	46	1.23
63876695--63876780	18	4.7	18	81	7	93	41	12	9	36	1.75
63876695--63876783	36	2.4	37	79	1	117	40	13	10	35	1.78
63876908--63877024	47	2.5	47	90	2	173	42	21	18	17	1.89
63877189--63877253	23	3.1	22	77	18	68	30	7	1	60	1.34
63877205--63877253	20	2.4	21	76	10	66	32	6	0	61	1.21
63879628--63879708	31	2.6	31	94	0	144	23	28	18	29	1.98
63880017--63880051	10	3.4	10	92	7	61	31	17	17	34	1.93
63886979--63887089	38	2.9	38	86	5	136	22	23	27	26	1.99
63886995--63887100	38	2.8	37	88	4	142	20	22	28	28	1.99
63887072--63887174	43	2.4	43	85	3	138	13	24	33	28	1.93
63888692--63888795	48	2.2	48	82	6	122	29	21	30	18	1.97
63892379--63892491	38	2.9	38	85	2	136	23	23	26	26	2.00
63892395--63892497	38	2.7	38	87	0	143	22	23	25	29	1.99
63892495--63892576	43	1.9	43	82	0	101	12	21	32	32	1.91
63892895--63893005	44	2.5	45	83	9	124	25	20	27	26	1.99
63897609--63897718	42	2.5	44	81	7	136	32	27	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63901528--63901710	39	4.6	39	87	0	240	24	22	30	22	1.99
63908376--63908493	41	3.1	41	60	28	98	32	17	28	21	1.96
63908344--63908507	71	2.3	71	100	0	328	35	17	28	18	1.94
63915725--63915842	41	3.1	41	60	28	98	32	17	28	21	1.96
63915693--63915856	71	2.3	71	100	0	328	35	17	28	18	1.94
63919086--63919267	39	4.6	39	86	2	231	24	22	30	23	1.99
63922715--63922750	2	18.0	2	88	0	54	50	2	2	44	1.31
63923392--63923465	29	2.6	29	89	4	105	25	16	32	25	1.96
63930989--63931028	18	2.2	18	86	8	55	22	42	17	17	1.89
63930999--63931034	18	2.0	18	94	0	63	16	41	22	19	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325