Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  167  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51722455--51722725
24
11.1
24
92
4
427
21
17
24
36
1.94
51727880--51727943
30
2.1
30
97
0
119
29
35
18
15
1.92
51732285--51732415
30
4.5
30
86
8
171
28
25
13
32
1.94
51732284--51732415
58
2.3
58
85
4
176
28
26
13
31
1.94
51737090--51737240
40
3.8
40
80
7
173
24
27
23
24
2.00
51737094--51737280
80
2.3
81
81
13
226
25
26
22
26
2.00
51742860--51742884
10
2.5
10
100
0
50
40
32
8
20
1.81
51744496--51744530
12
2.8
13
86
4
54
82
8
0
8
0.83
51749669--51749717
21
2.4
21
86
3
64
38
32
6
22
1.79
51752672--51752707
2
18.0
2
100
0
72
50
0
0
50
1.00
51752704--51752763
27
2.3
26
85
2
75
21
23
20
35
1.96
51753626--51753650
2
12.5
2
100
0
50
52
0
0
48
1.00
51754614--51754775
35
4.6
35
80
0
180
42
19
9
29
1.82
51759719--51759831
27
4.2
27
86
0
154
38
15
17
28
1.90
51759726--51759845
54
2.2
54
89
0
177
36
18
19
25
1.94
51759726--51759859
27
5.0
26
76
13
101
36
17
20
25
1.94
51760373--51760428
22
2.6
20
73
21
51
21
25
19
33
1.97
51760216--51760605
216
1.8
217
80
3
482
24
21
20
33
1.97
51760596--51760677
28
3.0
27
78
5
85
19
20
21
37
1.94
51760795--51760894
6
16.3
6
73
15
71
21
20
11
48
1.80
51760795--51760886
37
2.5
37
85
0
130
21
20
9
47
1.79
51765054--51765150
30
3.2
30
71
8
90
27
15
28
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51768215--51768271
28
2.0
28
100
0
114
43
14
14
28
1.83
51768569--51768739
35
5.0
35
77
11
138
42
19
9
28
1.83
51769598--51769627
15
2.0
15
93
0
51
56
16
0
26
1.40
51772373--51772595
49
4.5
49
88
3
306
26
17
26
29
1.98
51774171--51774195
2
12.5
2
100
0
50
52
0
0
48
1.00
51775608--51775662
15
3.8
13
81
11
56
9
16
16
58
1.62
51775606--51775673
14
4.7
15
78
12
70
7
16
17
58
1.59
51777808--51778032
49
4.5
49
89
2
315
24
18
28
28
1.98
51777801--51778040
99
2.4
100
86
2
331
24
19
28
28
1.98
51782003--51782126
46
2.7
45
74
12
117
24
25
18
31
1.98
51783850--51783886
19
1.9
19
94
0
65
21
8
13
56
1.63
51786247--51786328
41
2.0
41
100
0
164
36
26
14
21
1.93
51786640--51786722
19
4.4
19
69
11
55
67
2
16
13
1.33
51786634--51786682
21
2.4
21
83
6
57
73
4
14
8
1.21
51786693--51786738
18
2.5
19
76
16
51
67
2
23
6
1.25
51789947--51790007
30
2.0
30
83
0
77
31
22
8
37
1.84
51792437--51792492
27
2.1
26
90
9
87
33
8
17
39
1.81
51793790--51793837
20
2.4
20
71
0
51
22
29
16
31
1.96
51796194--51796261
5
13.0
5
75
17
59
77
1
16
4
0.99
51796205--51796261
16
3.7
14
80
17
60
77
0
17
5
0.95
51796346--51796408
24
2.6
24
79
0
72
63
0
25
11
1.27
51796346--51796390
12
3.8
12
81
0
54
66
0
24
8
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51798025--51798072
20
2.4
20
71
0
51
22
29
16
31
1.96
51798297--51798328
11
2.6
13
90
9
50
75
9
6
9
1.20
51803444--51803470
10
2.7
10
100
0
54
40
29
11
18
1.85
51804559--51805116
279
2.0
278
98
0
1080
27
28
11
32
1.91
51806190--51806236
21
2.2
21
100
0
94
23
34
14
27
1.94
51811600--51811639
19
2.1
19
85
0
53
25
35
17
22
1.95
51818235--51818331
30
3.2
30
76
2
97
28
14
26
29
1.95
51822476--51822523
15
3.3
15
73
5
53
31
0
25
43
1.55
51823507--51823551
14
3.3
14
78
6
56
48
15
0
35
1.45
51826030--51826079
18
2.8
18
87
0
73
14
28
0
58
1.37
51826005--51826082
24
3.2
24
79
0
84
12
28
0
58
1.34
51827375--51827422
15
3.3
15
73
5
53
31
0
25
43
1.55
51827369--51827428
29
2.1
29
90
0
93
30
0
28
41
1.56
51828405--51828449
14
3.3
14
78
6
56
48
15
0
35
1.45
51829759--51829791
13
2.6
13
90
4
50
3
18
0
78
0.87
51833863--51833901
20
1.9
21
89
5
62
25
25
12
35
1.92
51834047--51834084
19
2.0
19
89
0
58
28
5
10
55
1.56
51839963--51840060
30
3.3
30
70
5
72
30
15
25
28
1.96
51842445--51842512
5
13.0
5
74
20
59
2
16
2
77
1.00
51842445--51842501
16
3.7
14
82
15
60
3
17
1
77
1.00
51842445--51842512
21
3.2
21
78
12
68
2
16
2
77
1.00
51845085--51845167
30
2.8
30
73
0
85
27
16
27
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51852643--51852680
20
1.9
20
94
0
67
52
23
10
13
1.71
51854555--51854603
20
2.5
20
77
16
57
30
14
36
18
1.90
51855772--51855817
18
2.5
19
75
13
51
58
6
0
34
1.24
51856186--51856445
129
2.0
130
84
2
335
26
20
24
29
1.99
51858061--51858112
6
8.7
6
75
8
52
5
21
0
73
1.04
51858061--51858122
29
2.1
30
85
8
83
8
19
0
72
1.09
51860622--51860691
25
2.8
25
91
0
104
27
20
25
27
1.99
51860738--51860767
11
2.8
11
95
5
53
30
16
16
36
1.91
51863540--51863852
27
11.7
26
81
6
338
39
20
8
30
1.83
51863540--51863825
54
5.3
54
90
0
430
40
20
8
31
1.81
51863540--51863855
81
3.9
81
84
4
406
39
20
9
30
1.84
51863756--51864024
27
10.0
27
84
5
303
35
20
19
25
1.96
51863540--51864028
81
6.1
79
79
7
344
38
19
13
28
1.90
51864379--51864437
22
2.7
22
78
5
57
20
25
22
32
1.98
51864832--51864946
6
18.7
6
72
18
76
22
19
11
46
1.81
51864802--51864900
31
3.2
31
88
1
126
21
17
11
50
1.76
51864865--51864931
25
2.7
25
95
0
125
23
22
7
46
1.77
51864832--51864938
31
3.6
31
80
14
136
23
19
10
46
1.80
51864877--51864919
13
3.4
13
75
18
54
27
25
2
44
1.66
51866287--51866332
20
2.2
21
84
3
58
26
26
15
32
1.95
51866363--51866404
19
2.2
19
95
0
75
30
30
16
21
1.95
51867957--51868053
30
3.2
30
71
8
81
28
15
27
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51870281--51870362
30
2.7
30
81
9
87
13
21
1
63
1.36
51870365--51870395
12
2.6
12
100
0
62
25
16
12
45
1.83
51870443--51870505
5
12.0
5
76
18
58
3
17
1
77
0.97
51870456--51870505
6
8.2
6
81
16
50
2
18
2
78
0.95
51870445--51870505
22
2.8
20
85
9
77
3
16
1
78
0.96
51873048--51873144
30
3.2
30
71
8
90
27
14
28
28
1.95
51876153--51876200
15
3.3
15
73
5
53
43
25
0
31
1.55
51882419--51882478
29
2.1
29
90
0
93
41
28
0
30
1.56
51882425--51882472
15
3.3
15
73
5
53
43
25
0
31
1.55
51882695--51882732
10
3.7
10
89
6
58
76
2
7
13
1.11
51882694--51882733
11
3.7
11
90
6
64
77
2
7
12
1.07
51882694--51882739
21
2.2
21
84
0
56
78
4
6
10
1.08
51883634--51883667
12
2.8
12
90
0
50
50
8
20
20
1.75
51886974--51887021
15
3.3
15
73
5
53
41
25
2
31
1.67
51888299--51888395
30
3.2
30
73
2
97
27
28
15
27
1.96
51891240--51891336
30
3.2
30
75
2
97
27
15
27
28
1.96
51892296--51892339
22
2.0
22
100
0
88
31
18
0
50
1.47
51894179--51894245
24
2.7
24
76
19
66
74
1
17
5
1.09
51896118--51896144
14
1.9
14
100
0
54
40
14
14
29
1.86
51897193--51897231
19
2.0
20
90
5
62
28
15
30
25
1.96
51898305--51898349
14
3.3
14
78
6
56
35
0
15
48
1.45
51901087--51901135
19
2.6
18
83
6
53
59
2
30
8
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51901163--51901196
6
5.7
6
92
0
59
79
0
17
2
0.86
51901162--51901196
18
1.9
18
100
0
70
77
0
17
5
0.96
51903320--51903346
10
2.7
10
100
0
54
18
11
29
40
1.85
51907745--51907841
30
3.2
30
77
2
106
28
15
26
28
1.96
51910078--51910160
30
2.7
30
81
9
89
13
21
1
63
1.35
51910111--51910166
18
3.1
18
76
5
51
7
19
3
69
1.27
51910136--51910160
12
2.1
12
100
0
50
8
16
0
76
1.02
51910229--51910285
5
11.0
5
75
20
55
3
17
1
77
1.00
51910229--51910285
16
3.7
14
82
15
60
3
17
1
77
1.00
51910227--51910296
20
3.3
20
73
18
63
4
18
1
75
1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325