genome.fa.s4.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  149  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45520857--45521148	97	3.0	97	78	1	291	32	17	22	27	1.96
45523140--45523214	3	25.0	3	100	0	150	33	0	0	66	0.92
45530688--45530870	38	4.6	38	82	11	240	29	25	14	30	1.95
45530682--45530964	85	3.3	83	79	15	294	30	24	14	30	1.95
45530688--45530922	123	1.9	123	97	0	443	30	24	14	30	1.94
45530839--45530964	48	2.7	47	88	1	189	31	23	14	30	1.94
45532228--45532260	13	2.5	13	95	0	57	42	12	9	36	1.74
45536283--45536339	18	3.4	18	72	22	70	8	31	38	21	1.84
45536168--45536364	31	6.4	31	90	0	259	13	31	32	22	1.92
45537411--45537450	20	2.0	20	100	0	80	45	5	10	40	1.60
45539626--45539756	30	4.5	30	86	8	171	32	13	25	28	1.94
45539626--45539756	58	2.2	58	86	4	174	32	13	25	28	1.94
45543183--45543231	20	2.7	18	77	22	57	51	4	2	42	1.32
45549866--45549907	20	2.1	20	95	0	75	45	0	2	52	1.13
45553353--45553390	7	5.4	7	100	0	76	44	13	0	42	1.43
45567523--45567860	47	7.3	47	92	2	540	33	9	28	28	1.88
45567523--45567860	93	3.6	93	92	1	529	33	9	28	28	1.88
45567677--45567750	22	3.2	22	64	17	60	32	10	31	25	1.90
45570402--45570588	40	4.7	40	86	1	252	24	21	29	24	1.99
45570406--45570584	80	2.2	80	95	1	315	23	22	29	25	1.99
45574221--45574557	47	7.3	47	91	3	531	32	9	29	28	1.88
45574218--45574557	93	3.7	90	90	3	518	32	9	29	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45574221--45574545	137	2.4	136	92	2	524	32	9	29	28	1.89
45582194--45582419	95	2.3	95	83	6	267	21	31	21	25	1.98
45582161--45582425	50	5.4	48	77	10	254	22	30	20	25	1.98
45582161--45582425	145	1.8	147	86	5	385	22	30	20	25	1.98
45588210--45588260	6	8.5	6	97	0	93	82	0	1	15	0.76
45590052--45590211	29	5.5	29	82	4	180	25	31	16	26	1.97
45598129--45598288	29	5.5	29	82	4	180	25	31	16	26	1.97
45604568--45604594	13	2.1	13	100	0	54	51	14	0	33	1.43
45609663--45609844	39	4.6	39	90	0	247	21	31	23	23	1.98
45609693--45609844	39	3.9	39	93	0	250	22	31	22	23	1.98
45618995--45619163	40	4.2	40	80	4	173	23	26	21	28	1.99
45627101--45627268	40	4.2	40	78	6	164	23	26	21	28	1.99
45638099--45638166	33	2.1	33	100	0	136	44	14	8	32	1.76
45639493--45639524	12	2.7	12	95	0	55	12	40	15	31	1.85
45640118--45640486	196	1.9	196	89	1	578	27	17	23	31	1.97
45640896--45641082	48	3.9	48	85	4	234	25	28	18	27	1.98
45657194--45657285	45	2.0	45	85	8	125	33	6	8	51	1.59
45663909--45663952	22	2.0	22	82	8	54	43	15	6	34	1.74
45675517--45675628	40	2.8	39	84	8	129	25	23	27	23	2.00
45679599--45679761	43	3.8	43	74	9	116	25	17	23	33	1.96
45684678--45684726	20	2.5	20	89	0	71	14	18	32	34	1.91
45684673--45684738	20	3.3	19	76	6	60	16	18	34	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45687624--45687741	62	1.9	61	87	1	173	27	22	20	29	1.98
45688346--45688388	16	2.6	17	81	7	52	76	4	11	6	1.13
45691744--45691938	24	8.1	24	94	0	318	35	26	17	20	1.95
45700937--45701052	54	2.1	55	81	7	139	24	31	27	17	1.97
45716024--45716061	17	2.3	17	86	4	51	71	5	0	23	1.07
45716554--45716619	17	3.9	17	76	5	53	30	3	1	65	1.17
45721081--45721113	17	2.0	17	88	5	50	69	3	6	21	1.24
45721390--45721782	38	10.8	34	76	11	293	36	15	22	25	1.93
45721390--45721808	146	2.9	146	79	6	454	38	15	21	25	1.92
45721391--45721822	73	5.9	73	78	6	383	38	14	21	25	1.92
45724631--45724803	47	3.7	47	96	0	310	31	15	17	35	1.91
45725256--45725306	15	3.4	15	77	0	57	52	27	0	19	1.46
45725245--45725288	23	1.9	23	85	0	61	54	25	0	20	1.45
45725211--45725327	15	7.9	15	64	25	52	51	31	0	16	1.50
45725212--45725326	30	3.9	30	75	16	89	51	31	0	16	1.51
45725419--45725462	22	2.0	22	90	0	70	50	36	0	13	1.42
45725424--45725484	22	2.8	22	82	5	70	50	34	0	14	1.43
45725806--45726306	132	3.8	132	92	0	779	33	25	15	25	1.95
45726202--45726397	91	2.2	91	85	1	268	33	24	14	27	1.94
45731305--45731329	2	12.5	2	100	0	50	52	0	0	48	1.00
45731360--45731439	29	2.7	29	82	5	99	27	32	13	26	1.94
45743020--45743155	26	5.2	26	94	0	236	33	5	25	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45744651--45744870	27	8.2	26	78	7	215	18	22	22	36	1.95
45744651--45744870	54	4.1	54	92	1	291	18	22	22	36	1.95
45746621--45746828	53	3.8	53	71	10	163	39	16	23	20	1.92
45751291--45751350	29	2.1	29	93	0	102	41	30	0	28	1.56
45751297--45751344	15	3.3	15	73	5	53	43	27	0	29	1.55
45753523--45753566	12	3.5	12	87	6	61	70	6	6	15	1.31
45753517--45753566	25	2.0	26	88	11	77	68	10	6	16	1.38
45753517--45753582	13	4.8	13	73	15	53	69	9	6	15	1.34
45753544--45753582	17	2.4	16	84	12	53	74	5	7	12	1.20
45754494--45754550	11	5.5	10	73	22	55	77	1	17	3	1.00
45754494--45754550	5	11.0	5	77	17	55	77	1	17	3	1.00
45754494--45754550	16	3.7	14	80	17	60	77	1	17	3	1.00
45754619--45754643	12	2.1	12	100	0	50	76	0	16	8	1.02
45754613--45754668	18	3.1	18	76	5	51	69	3	19	7	1.27
45754619--45754700	30	2.7	31	81	5	105	64	1	21	12	1.33
45758563--45758602	21	2.0	20	85	14	55	35	12	22	30	1.91
45765349--45765454	42	2.5	42	98	1	203	33	12	14	40	1.83
45765437--45765481	14	3.3	14	84	6	65	37	0	13	48	1.42
45766176--45766235	29	2.1	29	90	0	93	41	28	0	30	1.56
45766182--45766229	15	3.3	15	73	5	53	43	25	0	31	1.55
45767396--45767492	30	3.2	31	73	5	101	27	28	15	27	1.96
45770229--45770401	93	1.9	93	88	0	265	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45770221--45770397	46	3.8	46	72	7	151	29	26	20	23	1.99
45788108--45788240	50	2.6	51	86	1	178	29	26	18	25	1.98
45788065--45788248	101	1.8	99	84	2	251	28	26	19	25	1.99
45790256--45790291	18	1.9	19	88	5	56	38	8	0	52	1.32
45794676--45794992	47	6.7	47	87	5	433	32	7	31	29	1.84
45794676--45794992	96	3.3	93	86	8	424	32	7	31	29	1.84
45796919--45797130	40	5.2	41	84	3	214	24	22	27	25	2.00
45797113--45797332	43	5.1	43	95	1	379	13	21	32	32	1.92
45797113--45797332	85	2.6	86	94	1	379	13	21	32	32	1.92
45807641--45807828	49	3.8	49	76	5	198	28	18	23	29	1.98
45807636--45807822	100	1.9	100	90	2	304	27	18	24	29	1.98
45809205--45809249	14	3.3	14	78	6	56	35	0	15	48	1.45
45810218--45810277	29	2.1	29	93	0	102	41	30	0	28	1.56
45810224--45810271	15	3.3	15	73	5	53	43	27	0	29	1.55
45810489--45810530	11	3.7	11	84	6	57	78	4	4	11	1.06
45810489--45810531	12	3.7	12	84	6	61	79	4	4	11	1.04
45810511--45810544	18	2.0	17	88	11	52	76	5	5	11	1.14
45815838--45815882	14	3.3	14	78	6	56	35	0	15	48	1.45
45816854--45816913	29	2.1	29	93	0	102	41	30	0	28	1.56
45816860--45816907	15	3.3	15	73	5	53	43	27	0	29	1.55
45822181--45822356	46	3.8	46	79	12	216	20	21	29	28	1.98
45822178--45822349	93	1.8	93	96	0	317	20	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45829743--45829918	46	3.8	46	79	12	216	20	21	29	28	1.98
45829740--45829911	93	1.8	93	96	0	317	20	21	29	27	1.98
45831306--45831429	50	2.4	52	77	6	137	37	13	13	35	1.85
45831469--45831510	20	2.2	19	86	4	57	61	4	0	33	1.17
45833341--45833392	10	5.2	10	80	13	54	76	1	0	21	0.87
45833344--45833383	6	6.3	6	91	5	53	77	2	0	20	0.88
45833346--45833396	20	2.6	19	84	9	66	76	1	0	21	0.88
45837849--45837945	30	3.2	31	75	5	101	28	27	14	28	1.95
45840550--45840599	6	9.2	6	83	14	56	80	0	18	2	0.82
45840550--45840610	21	2.8	21	87	5	77	78	1	16	3	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325