Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  322  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97445748--97445923
46
3.8
46
79
12
216
28
29
21
20
1.98
97453334--97453505
93
1.8
93
96
0
317
27
29
21
20
1.98
97453327--97453502
46
3.8
46
79
12
216
28
29
21
20
1.98
97460912--97461083
93
1.8
93
96
0
317
27
29
21
20
1.98
97460905--97461080
46
3.8
46
79
12
216
28
29
21
20
1.98
97462418--97462607
29
6.6
29
89
1
265
26
32
15
25
1.96
97465977--97466015
21
2.0
20
85
14
55
76
0
15
7
0.99
97467324--97467426
29
3.6
29
81
2
118
23
16
32
28
1.96
97473117--97473206
45
2.0
45
95
0
162
42
14
3
40
1.62
97473756--97473791
6
6.0
6
96
0
54
38
0
11
50
1.38
97474592--97474621
2
14.5
2
93
6
51
50
0
3
46
1.18
97479613--97479663
24
2.1
24
85
0
66
47
7
13
31
1.72
97481548--97481594
14
3.5
14
77
11
62
57
2
8
31
1.41
97481546--97481599
26
2.1
26
100
0
108
57
3
7
31
1.44
97481935--97481999
19
3.1
21
86
6
62
36
20
9
33
1.84
97481952--97482049
19
5.2
19
87
7
146
35
16
10
37
1.82
97481963--97482049
36
2.3
37
88
7
131
36
14
11
36
1.83
97485049--97485147
49
2.0
49
98
0
189
26
13
23
37
1.91
97485893--97486058
53
3.1
53
87
6
212
25
15
27
30
1.96
97507208--97507352
40
3.6
40
84
6
186
30
27
18
23
1.98
97510556--97510585
15
2.0
15
93
0
51
63
6
10
20
1.47
97510612--97510666
14
3.9
14
80
7
67
45
1
16
36
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97510610--97510712
28
3.7
27
75
12
91
44
0
20
33
1.58
97510610--97510713
21
5.0
20
72
11
75
45
0
20
33
1.58
97513755--97513779
3
8.3
3
100
0
50
36
0
0
64
0.94
97514915--97514955
19
2.2
19
100
0
82
9
0
31
58
1.31
97516341--97516366
6
4.3
6
100
0
52
15
15
0
69
1.20
97520660--97520695
19
2.0
18
89
10
56
25
19
5
50
1.69
97525138--97525255
58
2.0
59
95
1
211
18
19
23
38
1.93
97533694--97533731
2
19.0
2
100
0
76
0
50
0
50
1.00
97534550--97534633
42
2.0
42
97
0
159
50
10
2
36
1.50
97538577--97538663
44
1.9
45
88
4
131
34
13
24
27
1.93
97538568--97538682
44
2.6
45
81
5
126
36
13
20
28
1.92
97540295--97540378
20
4.2
19
69
19
64
60
1
1
36
1.12
97546868--97546915
25
1.9
25
83
8
62
45
2
4
47
1.33
97546811--97546952
61
2.4
61
83
8
184
42
2
4
50
1.38
97547130--97547176
23
2.0
23
100
0
94
44
4
8
42
1.54
97573427--97573554
67
1.9
67
88
3
195
25
13
18
42
1.87
97576346--97576388
21
2.0
21
86
4
59
55
4
0
39
1.20
97577445--97577496
26
2.1
26
89
7
81
21
19
15
44
1.87
97578290--97578483
50
3.9
50
86
5
286
28
12
11
46
1.78
97578291--97578481
98
1.9
100
89
2
296
28
13
11
46
1.77
97579049--97579121
37
2.0
36
86
2
101
53
2
2
41
1.29
97586443--97586475
6
5.5
6
100
0
66
0
30
18
51
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97587827--97587880
21
2.4
23
84
6
67
70
9
1
18
1.23
97587863--97587895
16
2.0
17
88
5
50
63
0
6
30
1.18
97588165--97588265
50
2.0
50
90
3
159
20
13
12
52
1.74
97588742--97588819
31
2.5
31
82
0
93
46
8
12
32
1.73
97589729--97589777
17
2.8
17
90
3
71
24
2
2
71
1.07
97592634--97592725
42
2.2
42
98
0
175
30
22
36
9
1.87
97596631--97596671
21
2.0
21
85
4
57
48
4
9
36
1.58
97599160--97599273
20
5.6
20
71
19
83
53
4
1
40
1.31
97599197--97599245
27
1.9
27
88
12
77
53
6
0
40
1.26
97599194--97599251
24
2.3
26
83
16
77
53
5
0
41
1.23
97612073--97612139
26
2.7
24
75
20
66
65
4
1
28
1.21
97612172--97612216
23
2.0
22
82
4
54
28
4
0
66
1.11
97612904--97612928
12
2.1
12
100
0
50
32
0
0
68
0.90
97613039--97613071
13
2.4
14
90
10
50
42
3
0
54
1.15
97613120--97613158
15
2.5
15
87
4
51
56
2
0
41
1.13
97626890--97626914
4
6.2
4
100
0
50
24
0
0
76
0.80
97628203--97628247
16
2.8
17
86
6
58
37
2
0
60
1.09
97633380--97633420
21
2.0
21
85
0
55
65
4
2
26
1.25
97635678--97635742
26
2.5
27
72
7
62
40
9
3
47
1.51
97636446--97636487
15
3.0
15
76
20
54
61
0
0
38
0.96
97636870--97636918
23
2.1
23
81
7
55
36
10
14
38
1.80
97648360--97648427
34
2.0
34
97
0
127
42
14
14
27
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97653066--97653095
14
2.1
15
93
6
53
36
6
0
56
1.26
97654486--97654515
14
2.1
14
100
0
60
70
0
0
30
0.88
97654695--97654733
21
2.0
21
90
10
64
69
0
0
30
0.89
97663260--97663289
14
2.1
14
93
0
51
73
0
3
23
0.98
97664191--97664233
11
3.8
11
80
17
52
30
2
2
65
1.18
97664194--97664237
23
1.9
23
90
0
70
31
2
4
61
1.28
97668121--97668229
50
2.2
51
79
3
121
29
22
24
23
1.99
97671242--97671267
9
2.9
9
100
0
52
7
11
34
46
1.69
97673800--97673841
17
2.4
18
84
11
61
59
0
2
38
1.10
97673967--97673992
8
3.2
8
100
0
52
57
0
0
42
0.98
97673960--97674010
16
3.4
16
76
13
54
50
0
0
49
1.00
97674233--97674280
23
2.0
23
84
8
60
35
6
0
58
1.23
97675195--97675241
24
2.0
24
86
0
67
42
2
4
51
1.33
97675221--97675268
20
2.3
20
83
16
55
33
0
10
56
1.34
97678870--97678908
20
1.9
21
84
5
53
30
5
2
61
1.31
97684110--97684184
20
3.7
20
74
13
71
44
1
32
22
1.62
97693168--97693396
77
3.0
77
87
1
325
33
9
15
41
1.79
97703487--97703547
29
2.1
29
90
0
95
54
22
6
16
1.65
97708902--97709009
26
4.2
26
95
0
198
32
7
25
35
1.84
97714123--97714174
21
2.5
22
82
11
58
32
3
0
63
1.12
97715310--97715373
26
2.4
27
75
14
71
62
1
7
28
1.32
97719088--97719275
3
62.3
3
69
13
66
59
4
6
29
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97726011--97726057
21
2.2
21
88
0
67
10
8
6
74
1.22
97726474--97726510
14
2.6
14
95
0
65
40
0
10
48
1.38
97726666--97726734
31
2.2
31
87
5
95
50
8
17
23
1.73
97727467--97727514
11
4.5
11
76
12
55
62
4
0
33
1.14
97727472--97727522
20
2.6
20
90
3
77
60
5
0
33
1.21
97727472--97727534
19
3.3
19
84
10
67
58
4
0
36
1.19
97729195--97729260
32
2.1
32
100
0
132
15
18
13
53
1.74
97732759--97732813
18
2.9
18
79
17
51
50
0
5
43
1.25
97746572--97746606
18
1.9
18
88
0
52
68
2
0
28
1.04
97753570--97753599
15
1.9
16
93
6
53
3
53
43
0
1.17
97753624--97753656
17
2.1
16
88
11
50
30
0
0
69
0.88
97753702--97753760
21
2.8
22
85
7
70
23
0
6
69
1.12
97753731--97753790
26
2.4
24
83
8
75
28
0
3
68
1.05
97755843--97755874
2
16.0
2
100
0
64
50
0
0
50
1.00
97762569--97762595
9
3.0
9
100
0
54
77
0
11
11
0.99
97772523--97772586
29
2.3
27
81
7
74
45
12
3
39
1.58
97773560--97773609
26
1.9
26
100
0
100
38
16
12
34
1.85
97775576--97775610
17
2.0
18
88
5
54
65
0
2
31
1.07
97785033--97785095
31
2.0
31
96
0
117
25
17
15
41
1.89
97789004--97789117
57
2.0
57
100
0
228
19
21
10
49
1.78
97792634--97792664
16
1.9
16
100
0
62
51
6
3
38
1.44
97798565--97798633
26
2.7
26
80
6
77
27
1
0
71
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97799183--97799242
30
2.0
30
86
0
84
56
11
5
26
1.55
97799278--97799320
22
2.0
22
81
9
52
60
13
6
18
1.55
97800868--97800897
15
2.0
15
93
0
51
76
0
0
23
0.78
97800864--97800968
25
4.3
24
71
13
56
67
0
0
30
1.03
97800874--97800927
17
3.2
16
78
2
54
68
0
1
29
1.00
97800868--97800968
41
2.5
44
81
13
110
67
0
0
30
1.04
97801118--97801164
15
3.1
15
84
0
67
40
0
4
55
1.19
97804100--97804162
30
2.1
30
91
5
101
25
4
11
58
1.51
97806524--97806555
11
2.8
11
95
4
55
0
0
9
90
0.45
97806761--97806790
15
2.0
15
100
0
60
33
6
20
40
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325