genome.fa.s4.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  159  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48734419--48734703	40	7.2	40	90	3	452	27	25	22	24	1.99
48736120--48736147	13	2.2	13	100	0	56	57	14	0	28	1.38
48736931--48737143	29	7.4	29	78	4	234	16	15	36	30	1.90
48736899--48736996	28	3.5	28	71	2	97	20	20	28	30	1.98
48736897--48737182	57	5.0	57	85	0	374	18	17	33	30	1.94
48736984--48737196	115	1.9	115	88	0	327	17	15	36	30	1.91
48740562--48740746	79	2.3	82	82	7	220	24	23	27	24	2.00
48740563--48740754	40	4.8	40	78	7	142	24	23	28	23	2.00
48740562--48740779	79	2.7	79	78	6	174	24	22	27	25	2.00
48744505--48744566	30	2.0	31	96	3	117	25	17	33	22	1.96
48748383--48748482	39	2.5	39	83	1	137	26	23	28	23	1.99
48748384--48748522	40	3.5	40	83	2	147	25	23	28	23	2.00
48748331--48748482	79	1.9	80	84	6	202	25	23	27	23	2.00
48748903--48749163	130	2.0	130	100	0	522	26	20	20	32	1.97
48753275--48753340	28	2.4	28	86	0	87	33	12	25	28	1.92
48753292--48753353	28	2.2	28	85	0	88	38	9	22	29	1.86
48760203--48760243	21	2.0	21	95	0	73	48	9	0	41	1.36
48761702--48761736	18	1.9	18	100	0	70	40	22	14	22	1.90
48761990--48762018	2	14.5	2	100	0	58	51	0	0	48	1.00
48771952--48772133	40	4.6	40	83	4	217	25	26	21	25	2.00
48779483--48779660	40	4.5	40	85	3	218	26	27	21	24	1.99
48782555--48782709	42	3.7	41	81	3	175	30	16	25	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48786776--48787030	40	6.4	40	93	0	422	29	24	22	23	1.99
48787784--48787839	19	3.1	19	72	15	64	42	17	7	32	1.77
48789312--48789363	28	2.0	25	85	11	68	13	23	25	38	1.91
48794984--48795138	42	3.7	42	86	5	204	31	16	23	28	1.96
48794984--48795138	85	1.8	84	84	6	215	31	16	23	28	1.96
48802003--48802173	40	4.3	39	77	10	159	28	21	26	23	1.99
48810088--48810188	39	2.5	40	85	1	132	30	22	24	21	1.99
48810088--48810238	40	3.8	40	84	4	180	28	22	25	23	1.99
48810084--48810255	40	4.4	38	77	10	161	29	21	26	23	1.99
48814393--48814531	40	3.5	40	91	3	201	24	23	28	23	2.00
48814384--48814571	40	4.7	40	84	6	179	23	23	28	24	2.00
48814384--48814598	80	2.7	79	76	10	206	24	23	27	24	2.00
48819254--48819509	40	6.5	40	88	3	342	24	23	27	24	2.00
48819255--48819509	119	2.2	119	85	5	338	24	23	27	24	2.00
48819254--48819509	79	3.2	80	84	7	328	24	23	27	24	2.00
48821754--48821791	19	2.0	20	85	15	53	39	23	0	36	1.55
48822021--48822191	93	1.8	93	91	2	281	28	27	21	22	1.99
48822016--48822188	46	3.7	46	77	11	192	29	26	20	23	1.99
48822611--48822670	30	2.0	30	83	0	75	33	25	3	38	1.72
48823899--48823941	21	2.1	21	83	12	54	32	0	20	46	1.51
48835042--48835123	29	2.8	29	96	0	146	24	31	14	29	1.95
48837350--48837388	15	2.6	15	91	0	69	61	0	20	17	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48844347--48844391	14	3.1	15	78	15	58	62	0	2	35	1.08
48844840--48844984	42	3.5	42	81	3	141	35	27	8	27	1.87
48849376--48849433	22	2.7	21	81	5	71	34	3	0	62	1.12
48849519--48849580	18	3.5	18	73	10	65	69	4	1	24	1.17
48849501--48849578	34	2.3	35	86	8	115	73	6	2	17	1.17
48849951--48849984	7	4.9	7	92	0	50	58	23	0	17	1.38
48850175--48850215	21	2.0	21	85	9	57	51	4	2	41	1.36
48850431--48850548	40	3.0	40	87	2	175	27	20	22	30	1.98
48864630--48864655	13	2.0	13	100	0	52	38	0	15	46	1.46
48868433--48868518	20	4.3	19	71	12	57	44	13	9	32	1.76
48868433--48868516	40	2.1	40	80	8	91	44	13	9	33	1.76
48871390--48871457	26	2.6	26	88	0	91	36	25	20	17	1.94
48871489--48871707	60	3.7	60	88	0	312	39	26	20	13	1.89
48871489--48871707	20	10.9	20	85	0	276	39	26	20	13	1.89
48873884--48874129	49	5.0	49	78	3	231	28	28	18	24	1.98
48876294--48876343	24	2.1	24	100	0	100	58	4	24	14	1.53
48878811--48879009	51	3.9	51	95	1	346	32	14	25	28	1.95
48884994--48885179	40	4.7	40	100	0	372	21	29	23	25	1.99
48893094--48893343	40	6.2	40	91	1	385	22	28	24	25	1.99
48899512--48899565	24	2.2	24	86	0	72	57	7	1	33	1.37
48900227--48900276	23	2.4	19	78	15	55	46	2	0	52	1.12
48901795--48901850	26	2.2	26	87	12	80	62	3	0	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48903871--48903919	3	16.3	3	100	0	98	67	0	0	32	0.91
48913844--48913913	29	2.4	29	79	15	74	21	8	1	68	1.24
48913870--48913936	28	2.4	28	80	9	73	22	5	4	67	1.31
48918928--48918996	34	2.0	36	86	11	99	46	20	5	27	1.73
48920176--48920334	43	3.7	43	79	9	180	30	25	15	28	1.95
48924767--48924876	40	2.8	40	85	0	148	23	26	23	26	2.00
48932818--48932927	40	2.8	40	85	0	148	23	26	23	26	2.00
48936058--48936195	40	3.5	40	88	3	199	23	28	23	24	2.00
48943922--48944099	40	4.5	40	91	3	263	24	28	23	23	1.99
48951893--48952031	40	3.5	39	91	2	197	27	28	20	23	1.99
48951867--48952030	80	2.1	79	86	5	224	25	28	21	24	1.99
48953654--48953859	40	5.2	40	89	3	294	26	29	20	23	1.99
48953654--48953859	79	2.6	78	88	4	297	26	29	20	23	1.99
48961655--48961860	40	5.2	40	89	3	294	26	29	20	23	1.99
48961655--48961859	79	2.6	78	88	5	297	26	29	20	23	1.99
48967123--48967286	71	2.3	71	100	0	328	18	28	17	35	1.94
48967123--48967320	71	2.8	70	91	3	258	20	28	17	33	1.95
48974700--48974863	71	2.3	71	100	0	328	18	28	17	35	1.94
48974700--48974897	71	2.8	70	91	3	258	20	28	17	33	1.95
48977771--48977932	42	3.8	42	83	1	207	33	17	22	25	1.96
48977771--48977932	85	1.9	84	84	3	218	33	17	22	25	1.96
48981760--48981831	29	2.5	28	88	6	101	30	16	26	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48986681--48986855	46	3.8	45	74	13	167	29	28	20	21	1.98
48986690--48986860	93	1.8	93	91	2	281	28	28	21	22	1.99
48986733--48986862	47	2.8	44	77	11	136	28	27	20	23	1.99
48990951--48991112	42	3.8	42	83	1	198	31	14	25	28	1.95
48990951--48991131	85	2.1	84	80	7	204	30	14	25	29	1.95
48991283--48991312	15	1.9	16	93	6	53	33	0	30	36	1.58
48998450--48998577	40	3.2	39	93	2	202	25	21	21	32	1.97
48998450--48998601	40	3.8	40	88	6	186	24	22	21	31	1.98
49006072--49006197	40	3.2	40	88	0	189	24	19	22	33	1.97
49010636--49010863	45	5.1	45	86	5	295	23	18	28	29	1.98
49015404--49015440	2	18.5	2	100	0	74	51	0	0	48	1.00
49019131--49019312	46	4.0	46	97	0	337	34	7	27	31	1.84
49019316--49019426	47	2.4	47	89	0	168	36	9	27	27	1.87
49023657--49023838	46	4.0	46	97	0	337	34	7	27	31	1.84
49023842--49023952	47	2.4	47	89	0	168	36	9	27	27	1.87
49026296--49026356	30	2.0	30	83	0	77	29	22	9	37	1.87
49031063--49031192	40	3.3	39	74	8	127	23	28	23	24	2.00
49031079--49031230	40	3.8	40	76	6	139	21	26	23	27	1.99
49031079--49031228	80	1.9	80	83	8	198	21	27	24	27	1.99
49042092--49042261	49	3.6	47	80	12	170	25	31	18	25	1.98
49042143--49042407	46	5.6	46	74	10	153	24	29	17	28	1.97
49044587--49044695	56	1.9	56	92	0	182	22	14	14	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49045699--49045762	31	2.1	31	90	0	101	46	7	17	28	1.75
49046947--49047044	43	2.3	43	82	5	119	35	17	18	28	1.93
49053960--49054090	29	4.5	29	93	0	226	23	22	14	39	1.91
49056587--49056698	43	2.6	42	86	5	163	28	23	16	31	1.96
49057316--49057367	27	1.9	27	88	0	77	40	17	25	17	1.90
49060781--49060962	40	4.7	39	85	9	230	25	28	22	24	2.00
49068977--49069157	40	4.7	39	84	10	221	26	27	22	24	2.00
49068977--49069153	75	2.3	78	81	9	218	26	27	21	24	1.99
49074889--49074964	28	2.8	27	92	4	125	21	23	22	32	1.98
49076636--49076745	40	2.8	40	85	0	148	26	23	26	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325