genome.fa.s4.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  105  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30976991--30977034	19	2.4	19	85	7	56	50	0	9	40	1.34
30981223--30981266	19	2.4	19	85	7	56	50	0	9	40	1.34
30986228--30986336	37	2.9	37	95	0	191	26	31	19	22	1.98
30986381--30986814	48	9.0	48	91	0	697	30	26	6	35	1.82
30986381--30986807	96	4.4	96	97	0	800	31	27	6	35	1.82
30990957--30991087	38	3.2	38	73	17	127	29	22	16	31	1.96
30991002--30991127	48	2.6	48	91	1	200	29	23	16	30	1.96
30995244--30995418	39	4.6	39	88	7	236	28	28	21	21	1.99
30995272--30995415	76	1.9	76	90	5	229	28	29	20	22	1.98
31004997--31005090	29	3.2	29	96	0	170	26	28	15	28	1.96
31004959--31005090	58	2.3	58	84	2	167	25	33	15	25	1.95
31012599--31012781	40	4.6	40	93	1	296	25	28	24	21	1.99
31014665--31014767	29	3.6	28	81	5	116	21	16	33	29	1.95
31020339--31020506	48	3.7	47	74	15	183	29	23	16	30	1.96
31020388--31020532	38	3.6	38	76	17	155	28	25	15	29	1.96
31020334--31020532	86	2.3	86	92	1	328	29	24	15	30	1.96
31022175--31022472	43	7.0	43	83	6	354	32	27	16	24	1.96
31022462--31022486	13	1.9	13	100	0	50	48	24	4	24	1.68
31023302--31023331	15	2.1	14	93	6	51	70	10	6	13	1.34
31030879--31030999	40	3.0	40	86	1	163	28	20	23	27	1.99
31030896--31031023	39	3.3	39	84	1	157	27	21	25	26	1.99
31030950--31031033	39	2.2	39	84	0	114	27	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31033437--31033499	28	2.2	28	97	0	117	33	28	7	30	1.86
31033606--31033687	27	3.0	27	82	7	103	19	25	23	31	1.98
31033606--31033721	55	2.1	56	80	7	130	18	24	21	35	1.96
31034151--31034189	19	2.1	19	85	0	51	15	5	7	71	1.26
31034772--31034805	10	3.3	10	84	8	50	29	8	8	52	1.62
31039089--31039260	93	1.8	93	94	0	308	28	29	20	20	1.98
31039082--31039257	46	3.8	46	79	12	207	29	29	20	20	1.98
31039131--31039269	47	3.0	46	75	16	144	29	28	19	22	1.98
31044073--31044137	28	2.3	28	97	0	121	33	27	7	30	1.85
31044245--31044332	27	3.1	28	77	8	99	19	23	23	32	1.97
31044253--31044343	27	3.2	28	79	4	85	20	26	19	32	1.97
31044796--31044834	19	2.1	19	85	0	51	15	5	7	71	1.26
31051208--31051289	40	2.0	40	92	0	137	31	21	20	25	1.98
31051208--31051300	40	2.3	40	88	3	134	31	23	20	24	1.98
31051268--31051362	39	2.4	39	87	3	129	24	21	28	26	1.99
31055767--31055864	39	2.5	39	93	0	160	24	22	28	24	1.99
31060238--31060302	26	2.5	26	82	9	80	41	16	9	32	1.80
31062591--31062673	27	3.0	27	83	1	103	38	16	22	21	1.93
31064542--31064810	27	10.0	27	83	3	204	34	8	21	35	1.84
31064534--31064796	81	3.3	81	82	2	260	34	8	22	34	1.85
31064614--31064815	80	2.5	81	81	1	235	32	9	20	37	1.85
31064652--31064843	54	3.6	53	77	6	181	31	9	20	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31064767--31064852	27	3.2	27	85	6	86	34	9	15	40	1.79
31069419--31069498	27	2.9	27	84	1	97	35	15	26	23	1.94
31069603--31069664	26	2.3	27	78	10	65	29	9	24	37	1.87
31069914--31069943	16	1.9	15	93	6	51	6	20	20	53	1.67
31074287--31074457	40	4.3	39	77	10	159	28	21	26	23	1.99
31082311--31082411	39	2.5	40	85	1	132	30	22	24	21	1.99
31082311--31082492	40	4.6	40	82	4	181	28	22	26	23	1.99
31086513--31086681	40	4.2	40	80	4	173	23	26	21	28	1.99
31094531--31094699	40	4.2	40	80	4	173	23	26	21	28	1.99
31100041--31100093	20	2.8	20	81	13	67	77	1	15	5	1.04
31101255--31101337	29	2.9	29	98	0	157	28	14	30	26	1.95
31101256--31101350	29	3.2	29	92	3	127	31	15	28	24	1.96
31101251--31101387	60	2.3	58	80	6	143	27	15	32	24	1.95
31110683--31110718	18	2.0	18	100	0	72	44	0	27	27	1.55
31112224--31112262	21	1.9	20	89	5	60	15	33	25	25	1.95
31113586--31113615	15	2.0	15	93	0	51	83	0	13	3	0.77
31114059--31114087	12	2.4	12	100	0	58	37	6	27	27	1.82
31114812--31114974	39	4.2	39	93	0	263	23	20	31	24	1.98
31114812--31115004	39	4.9	39	90	0	251	23	21	31	23	1.98
31119738--31119913	46	3.8	46	81	10	232	20	21	29	28	1.98
31119734--31119905	93	1.8	93	96	0	317	20	22	30	27	1.98
31122865--31122944	15	5.4	15	77	7	83	10	18	13	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31122856--31122943	30	3.0	30	80	11	92	10	18	15	55	1.68
31124859--31125034	46	3.8	46	81	10	232	20	21	29	28	1.98
31124855--31125026	93	1.8	93	96	0	317	20	22	30	27	1.98
31127544--31127606	28	2.3	27	94	2	108	33	28	7	30	1.86
31127712--31127801	27	3.2	28	81	7	112	18	24	24	32	1.97
31127712--31127826	55	2.1	56	80	8	128	17	24	22	35	1.95
31128261--31128299	19	2.1	19	85	0	51	15	5	7	71	1.26
31135404--31135467	28	2.3	28	86	5	85	29	31	9	29	1.88
31135573--31135635	28	2.2	29	88	2	92	20	23	23	31	1.98
31135583--31135646	28	2.2	28	86	2	83	23	26	18	31	1.98
31136099--31136137	19	2.1	19	85	0	51	15	5	7	71	1.26
31138717--31139128	96	4.4	96	74	15	292	26	17	29	25	1.98
31141020--31141076	30	1.9	30	85	0	78	43	8	21	26	1.81
31141497--31141670	46	3.8	45	78	13	194	20	20	29	29	1.98
31149022--31149197	46	3.8	46	79	12	216	20	21	29	28	1.98
31149019--31149190	93	1.8	93	96	0	317	20	21	29	27	1.98
31150066--31150232	40	4.2	40	82	2	185	24	26	22	26	2.00
31158066--31158232	40	4.2	40	82	2	185	24	26	22	26	2.00
31176220--31176254	16	2.2	16	94	0	61	37	25	11	25	1.90
31181300--31181431	29	4.6	29	79	1	122	23	17	34	25	1.96
31181462--31181500	2	19.5	2	100	0	78	48	0	0	51	1.00
31189221--31189352	29	4.6	29	79	1	122	23	17	34	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31189383--31189411	2	14.5	2	100	0	58	48	0	0	51	1.00
31197074--31197299	47	4.8	47	77	9	212	24	29	18	27	1.98
31212119--31212190	28	2.6	28	84	0	99	30	29	9	30	1.89
31212199--31212278	40	2.0	40	87	0	115	33	28	16	21	1.95
31215660--31215907	40	6.2	41	83	5	294	37	16	27	17	1.92
31215678--31215771	20	4.8	20	67	11	59	38	18	28	14	1.90
31224556--31224918	46	7.7	46	74	10	240	27	19	29	23	1.98
31224667--31224918	47	5.3	48	72	12	157	26	20	29	23	1.99
31224737--31224918	96	1.9	98	82	5	235	26	19	29	24	1.98
31230702--31230799	41	2.4	41	89	0	142	21	22	28	27	1.99
31231427--31231467	2	20.5	2	100	0	82	48	0	0	51	1.00
31236084--31236308	40	5.7	40	85	2	249	24	22	26	26	2.00
31243634--31243668	18	1.9	18	88	0	52	65	0	0	34	0.93
31244699--31244734	16	2.2	17	90	5	56	30	5	0	63	1.17
31244782--31244831	3	17.0	3	95	4	93	68	0	0	32	0.90
31247626--31247667	17	2.6	16	82	10	50	45	0	0	54	0.99
31249242--31249312	35	2.0	35	94	0	124	16	19	22	40	1.91
31249763--31249797	2	17.5	2	93	0	61	54	0	0	45	0.99
31255964--31256164	39	5.2	39	90	1	296	23	30	19	25	1.98
31263204--31263405	39	5.2	39	92	0	323	23	30	20	25	1.99
31283434--31283486	23	2.3	23	93	0	88	32	22	13	32	1.92
31285622--31285685	28	2.3	28	86	0	83	31	21	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31286753--31286809	23	2.5	23	94	0	96	26	7	15	50	1.69
31293291--31293359	17	3.8	18	70	12	61	42	1	2	53	1.24
31293291--31293359	12	5.7	12	73	24	56	42	1	2	53	1.24
31293332--31293445	61	1.9	58	85	5	156	42	6	2	49	1.41
31297085--31297188	45	2.3	45	81	3	120	37	13	25	23	1.91
31297416--31297486	27	2.6	27	79	0	79	38	16	25	19	1.93
31298435--31298526	17	5.4	17	66	21	50	50	2	6	41	1.40
31299826--31299923	42	2.3	42	91	3	153	30	14	23	31	1.94
31301164--31301324	51	3.2	51	94	0	268	29	23	14	32	1.94
31308393--31308542	42	3.5	42	83	2	149	30	16	23	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325