genome.fa.s4.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  156  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47790206--47790287	27	3.0	27	75	3	92	35	28	12	24	1.91
47790162--47790287	55	2.3	57	86	4	168	32	26	12	27	1.93
47790185--47790273	28	3.2	28	74	3	90	31	26	14	26	1.95
47790206--47790289	28	3.0	28	77	1	98	35	27	11	25	1.91
47792911--47793195	49	5.8	49	94	0	462	31	8	29	30	1.87
47793274--47793360	37	2.3	37	96	2	156	21	20	31	26	1.98
47797295--47797348	18	3.0	18	78	10	74	38	12	20	27	1.89
47797670--47797783	27	4.2	27	80	0	111	19	21	21	38	1.93
47797738--47797820	27	3.1	27	84	6	89	26	16	20	36	1.94
47800894--47800951	18	3.2	18	73	9	64	41	17	20	20	1.90
47801283--47801398	27	4.3	26	80	6	108	19	18	19	42	1.90
47804389--47804445	18	3.2	17	80	7	69	42	17	17	22	1.89
47804634--47804683	23	2.2	23	82	13	59	44	18	14	24	1.86
47804745--47804834	27	3.3	27	89	3	137	20	17	20	42	1.90
47809186--47809364	38	4.7	38	92	0	286	31	25	22	20	1.98
47818843--47819112	48	5.6	48	80	4	294	26	17	28	26	1.98
47818843--47819109	144	1.9	144	80	4	324	26	17	28	26	1.98
47818834--47819139	144	2.1	144	77	5	314	27	18	27	26	1.98
47822468--47822548	40	2.0	40	97	0	153	22	25	22	29	1.99
47830416--47830541	40	3.2	40	79	2	130	26	25	20	26	1.99
47841757--47841786	13	2.3	13	100	0	60	13	0	6	80	0.91
47846232--47846301	27	2.5	28	95	2	124	28	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47846232--47846313	27	3.0	27	85	8	78	29	15	24	30	1.96
47853407--47853476	27	2.5	28	95	2	124	28	14	27	30	1.95
47853407--47853488	27	3.0	27	85	8	78	29	15	24	30	1.96
47857216--47857248	17	1.9	17	88	11	50	54	18	3	24	1.57
47858722--47858839	28	4.2	29	77	4	125	27	14	30	27	1.95
47863237--47863311	29	2.6	29	80	0	78	24	13	34	28	1.93
47863608--47863685	40	2.0	40	92	0	129	42	20	21	15	1.89
47867696--47867767	29	2.5	29	83	0	90	33	13	27	25	1.94
47875827--47876000	46	3.7	48	78	13	152	24	28	20	27	1.99
47875830--47876000	94	1.8	92	85	5	236	24	27	20	27	1.99
47892960--47893029	29	2.4	29	88	6	99	28	12	25	32	1.93
47896155--47896330	46	3.8	46	81	10	214	19	21	30	28	1.97
47896151--47896323	93	1.9	93	95	0	310	19	21	31	27	1.98
47899244--47899322	15	5.4	15	77	10	83	10	17	13	58	1.63
47899235--47899321	29	3.0	29	81	8	95	10	17	16	56	1.67
47901694--47901868	46	3.8	46	80	11	214	20	21	30	28	1.98
47901690--47901860	92	1.8	93	93	1	299	19	22	30	26	1.98
47903721--47903869	80	1.9	80	81	2	183	22	30	24	22	1.99
47903762--47903869	40	2.7	38	85	8	128	21	29	25	23	1.99
47907324--47907507	40	4.6	39	75	6	138	26	23	27	22	2.00
47907364--47907552	80	2.4	81	77	4	186	23	24	29	22	1.99
47914630--47914813	40	4.6	39	75	6	138	26	23	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47914670--47914858	80	2.4	81	77	4	186	23	24	29	22	1.99
47917913--47918031	22	5.1	22	62	28	59	32	13	29	24	1.93
47917977--47918127	71	2.2	71	97	2	288	33	10	28	27	1.90
47917930--47918174	118	2.1	118	96	0	445	33	10	28	27	1.90
47917883--47918221	165	2.0	165	95	0	606	34	11	28	26	1.91
47917837--47918055	47	4.7	47	94	0	350	35	10	27	26	1.90
47918048--47918286	47	5.1	47	91	1	354	33	10	29	26	1.90
47918168--47918243	22	3.3	22	66	28	59	34	11	28	25	1.91
47918260--47918422	46	3.5	46	94	0	272	35	10	30	23	1.89
47918260--47918442	92	2.0	92	89	0	276	35	9	30	24	1.88
47925998--47926137	40	3.2	40	70	21	104	22	27	25	23	2.00
47926064--47926175	40	2.8	40	81	0	125	22	25	24	27	2.00
47933979--47934111	40	3.2	41	77	12	148	23	29	24	22	1.99
47936525--47936615	37	2.4	37	92	1	146	26	31	17	24	1.97
47938146--47938271	40	3.2	39	80	6	139	21	25	24	28	1.99
47938085--47938271	80	2.3	80	78	12	204	22	27	24	25	2.00
47939971--47940266	49	5.9	49	91	5	484	29	29	8	32	1.87
47940149--47940263	56	2.1	56	100	0	230	32	27	6	33	1.84
47940150--47940239	27	3.3	27	67	27	80	34	28	4	32	1.77
47941647--47941681	17	2.1	17	100	0	70	45	11	5	37	1.64
47943000--47943099	40	2.5	40	73	7	96	21	25	26	28	1.99
47943884--47944155	40	6.8	40	93	0	454	25	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47945979--47946069	37	2.4	37	94	1	155	26	31	18	23	1.97
47946156--47946500	49	6.9	49	92	4	564	30	29	8	32	1.86
47946334--47946497	56	3.1	56	87	12	279	31	28	7	32	1.84
47946187--47946497	105	3.0	105	92	3	519	30	29	7	32	1.85
47950335--47950368	17	1.9	18	94	5	61	23	38	23	14	1.92
47960745--47960836	43	2.2	41	82	3	112	28	17	21	32	1.96
47965807--47965963	40	3.9	40	81	6	149	22	24	24	28	1.99
47965861--47965977	40	2.9	38	82	5	144	23	25	23	28	1.99
47968503--47968620	46	2.5	46	82	6	141	30	16	27	24	1.97
47969340--47969384	21	2.2	21	77	18	51	22	33	28	15	1.95
47973946--47973989	17	2.4	18	77	14	54	56	9	0	34	1.31
47973984--47974013	15	2.0	15	93	0	51	40	10	0	50	1.36
47975973--47976042	17	4.1	18	80	10	76	70	0	1	28	0.96
47975994--47976053	12	4.8	12	75	22	52	73	0	3	23	0.98
47975975--47976053	39	2.0	39	85	9	108	70	0	2	26	0.99
47975975--47976043	3	23.7	3	73	24	51	71	0	1	27	0.95
47975976--47976053	5	15.6	5	76	19	58	71	0	2	25	0.98
47975979--47976050	9	8.5	8	76	21	67	72	0	2	25	0.98
47982427--47982458	10	3.3	10	95	4	57	62	0	6	31	1.20
47982446--47982489	17	2.4	18	77	14	54	56	9	0	34	1.31
47982484--47982513	15	2.0	15	93	0	51	40	10	0	50	1.36
47985972--47986069	28	3.5	28	84	4	108	29	16	24	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47993623--47993720	28	3.5	28	84	4	108	29	16	24	29	1.96
47998597--47998710	57	2.0	57	96	0	210	33	15	21	28	1.95
47999485--47999509	13	1.9	13	100	0	50	84	0	16	0	0.63
48000778--48000997	79	2.8	79	82	7	277	25	23	26	25	2.00
48000782--48000998	119	1.8	119	83	7	289	23	23	27	24	2.00
48000782--48000998	40	5.5	40	90	3	273	23	23	27	24	2.00
48008744--48008959	40	5.5	40	91	4	291	24	24	27	24	2.00
48010476--48010600	46	2.7	47	82	10	150	29	20	27	22	1.99
48016316--48016536	46	4.7	48	79	10	217	23	28	18	28	1.98
48016316--48016580	46	5.7	45	76	12	200	24	27	18	29	1.98
48020520--48020545	2	13.0	2	100	0	52	50	0	0	50	1.00
48026190--48026221	5	6.2	5	92	7	55	0	21	0	78	0.76
48026190--48026245	15	3.6	16	80	7	62	3	26	0	69	1.04
48031788--48032243	47	9.7	46	72	16	285	27	19	29	22	1.98
48031788--48032246	94	4.9	95	83	7	530	27	20	29	22	1.98
48034213--48034420	40	5.2	39	81	1	200	25	25	23	26	2.00
48034213--48034418	80	2.6	81	83	3	238	24	25	23	26	2.00
48042181--48042236	19	3.1	19	72	15	64	32	7	17	42	1.77
48042179--48042245	35	2.0	35	88	5	102	31	5	14	47	1.69
48042998--48043244	40	6.2	40	93	0	404	23	22	25	28	1.99
48045380--48045564	79	2.3	82	83	7	229	24	24	27	23	2.00
48045381--48045572	40	4.8	40	79	7	151	24	24	28	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48045380--48045597	79	2.7	79	79	6	183	24	23	27	24	2.00
48053198--48053253	19	3.1	19	72	15	64	32	7	17	42	1.77
48053196--48053262	35	2.0	35	88	5	102	31	5	14	47	1.69
48054013--48054258	40	6.2	40	93	0	413	23	21	25	29	1.99
48059428--48059598	40	4.3	39	77	10	159	28	21	26	23	1.99
48067451--48067630	40	4.5	39	77	10	161	27	22	26	23	1.99
48070843--48071203	47	7.7	46	73	16	262	27	21	28	22	1.99
48070846--48071203	94	3.8	93	79	11	394	27	20	28	22	1.99
48072929--48073002	29	2.6	29	95	0	139	27	14	31	27	1.95
48072986--48073061	29	2.6	29	78	0	89	22	19	35	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325