Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  323  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97809457--97809483
12
2.2
12
100
0
54
48
7
22
22
1.75
97810270--97810328
10
5.9
10
73
11
50
57
0
0
42
0.98
97810271--97810312
22
1.9
22
85
9
59
59
0
0
40
0.97
97810271--97810371
29
3.4
28
76
16
80
61
0
3
34
1.15
97810471--97810504
17
2.0
17
88
0
50
20
5
0
73
1.04
97811672--97811749
39
2.0
39
100
0
156
48
12
15
23
1.79
97811828--97811952
43
2.9
43
85
2
144
24
15
26
34
1.94
97813600--97813636
12
3.1
12
88
0
56
21
5
2
70
1.20
97813611--97813671
21
2.9
21
85
11
88
26
3
1
68
1.14
97813600--97813671
21
3.2
22
79
15
85
26
4
1
68
1.16
97816425--97816457
15
2.1
16
88
11
50
60
0
0
39
0.97
97821348--97821423
14
5.4
14
75
0
53
53
2
15
27
1.55
97821360--97821406
7
6.7
7
80
9
51
65
2
6
25
1.27
97829988--97830033
22
2.1
22
87
0
65
10
4
15
69
1.32
97841706--97841749
23
1.9
23
90
0
70
54
2
2
40
1.25
97844498--97844525
14
2.0
14
100
0
56
35
0
7
57
1.26
97844669--97844719
21
2.5
21
84
12
63
15
7
0
76
1.00
97845437--97845481
23
2.0
23
91
8
74
37
0
11
51
1.38
97845608--97845652
17
2.6
17
85
0
63
31
2
6
60
1.35
97845593--97845685
34
2.8
32
76
16
98
29
3
7
60
1.40
97845708--97845754
23
2.0
24
83
8
60
21
8
4
65
1.37
97846013--97846063
3
17.3
3
85
4
59
33
7
0
58
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97846268--97846321
3
18.3
3
78
17
60
33
3
0
62
1.12
97865724--97865771
10
4.5
10
80
12
51
29
2
0
68
1.01
97865724--97865771
21
2.2
22
88
3
71
29
2
0
68
1.01
97870785--97870818
11
3.2
11
83
8
52
38
0
0
61
0.96
97870825--97870874
18
2.7
18
82
17
50
38
0
2
60
1.09
97870832--97870875
19
2.4
18
81
11
54
38
0
0
61
0.96
97876978--97877011
2
17.0
2
100
0
68
50
0
0
50
1.00
97889843--97889873
7
4.4
7
95
0
53
32
41
0
25
1.56
97891545--97891578
17
2.0
17
88
0
50
44
2
0
52
1.16
97894992--97895043
25
2.1
25
100
0
104
26
15
17
40
1.89
97903946--97903985
6
6.7
6
94
0
62
67
0
32
0
0.91
97903946--97904001
12
4.7
12
82
4
60
67
0
32
0
0.91
97903946--97903991
18
2.6
18
85
0
65
67
0
32
0
0.91
97907037--97907089
10
5.1
11
82
13
51
52
5
0
41
1.25
97907052--97907090
12
3.4
12
89
10
64
53
5
0
41
1.23
97909583--97909626
22
2.0
22
83
12
56
34
2
4
59
1.30
97909603--97909666
20
3.2
20
82
8
69
32
4
4
57
1.40
97909692--97909766
26
2.8
26
71
13
64
26
0
8
65
1.20
97909735--97909799
10
6.2
10
76
13
51
30
1
3
64
1.18
97909742--97909788
23
2.0
23
92
8
78
29
0
4
65
1.11
97909766--97909841
19
4.3
19
69
24
58
38
1
2
57
1.21
97909795--97909849
8
6.6
8
75
21
51
40
0
1
58
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97909794--97909844
15
3.2
15
76
15
57
43
0
1
54
1.11
97909773--97909842
33
2.1
33
84
12
90
40
1
2
55
1.23
97909766--97909861
35
2.7
35
75
16
90
37
1
3
58
1.21
97913242--97913347
50
2.2
49
80
10
119
32
4
5
57
1.43
97913340--97913383
13
3.3
13
81
15
54
15
2
2
79
0.93
97913344--97913382
20
2.0
21
85
10
55
12
2
2
82
0.89
97913805--97913895
21
4.2
20
72
17
67
32
3
5
58
1.37
97913844--97913882
20
2.0
20
85
10
53
33
2
7
56
1.41
97914954--97915009
22
2.5
22
77
11
69
53
8
8
28
1.62
97919377--97919626
86
2.9
85
82
3
279
33
21
16
28
1.95
97920991--97921140
28
5.5
28
81
7
148
30
26
14
29
1.95
97921012--97921165
27
5.7
25
75
14
69
29
24
14
31
1.95
97927906--97928032
28
4.6
27
79
7
132
29
27
13
29
1.94
97930913--97930975
29
2.1
30
85
2
83
63
3
7
25
1.37
97937973--97938002
11
2.7
11
94
0
51
86
0
13
0
0.57
97939960--97940014
27
2.0
28
82
13
69
38
12
1
47
1.52
97941197--97941785
291
2.0
290
88
1
876
31
8
23
36
1.85
97946783--97946816
13
2.5
13
90
4
50
5
11
0
82
0.83
97948195--97948220
13
2.0
13
100
0
52
61
7
7
23
1.49
97949540--97949622
34
2.4
34
82
13
109
56
4
1
37
1.28
97951045--97951077
17
1.9
17
88
11
50
0
18
15
66
1.25
97954053--97954100
12
3.8
12
81
15
53
35
2
0
62
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97961212--97961242
2
15.5
2
100
0
62
51
0
0
48
1.00
97961679--97961744
32
2.1
32
94
0
114
48
9
18
24
1.76
97962666--97962830
81
2.0
82
84
3
217
46
9
10
33
1.71
97963050--97963083
2
17.0
2
100
0
68
50
0
0
50
1.00
97969594--97969635
3
14.0
3
100
0
84
33
0
0
66
0.92
97969936--97970010
33
2.3
33
83
4
98
49
1
0
49
1.09
97970075--97970115
21
2.0
21
85
9
57
58
0
2
39
1.11
97974897--97974945
21
2.3
21
78
0
62
38
4
14
42
1.64
97977609--97977648
19
2.0
19
85
9
53
42
0
2
55
1.13
97977620--97977704
19
4.2
20
73
20
70
40
0
4
55
1.21
97979090--97979138
3
16.3
3
100
0
98
67
0
0
32
0.91
97983895--97983946
26
2.0
26
85
3
70
25
3
7
63
1.38
97985185--97985216
2
16.0
2
100
0
64
50
0
0
50
1.00
97985384--97985421
2
19.0
2
100
0
76
50
0
0
50
1.00
97985838--97985879
22
1.9
22
85
0
57
11
11
9
66
1.44
97985907--97985934
11
2.5
11
100
0
56
17
0
7
75
1.03
97988298--97988363
33
2.0
33
93
0
114
33
9
6
51
1.58
97989372--97989433
20
3.0
22
79
11
85
61
0
1
37
1.06
97989372--97989454
23
3.9
22
76
13
66
57
1
1
39
1.14
97989439--97989467
2
14.5
2
100
0
58
48
0
0
51
1.00
97991473--97991523
17
3.4
17
65
30
51
47
0
7
45
1.32
97991469--97991526
28
2.1
28
100
0
116
50
0
6
43
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97991469--97991540
28
2.5
28
90
2
99
48
1
8
41
1.42
98001361--98001421
32
1.9
32
82
0
77
26
8
8
57
1.56
98007996--98008026
5
6.2
5
92
0
53
38
3
58
0
1.15
98008287--98008345
30
1.9
30
86
3
82
50
0
8
40
1.33
98009281--98009502
109
2.0
109
95
0
399
27
18
16
37
1.92
98018942--98019055
50
2.3
51
90
6
187
37
15
21
25
1.93
98019046--98019218
31
5.6
31
92
0
274
28
17
27
26
1.98
98019224--98019252
7
4.1
7
100
0
58
44
13
27
13
1.82
98019257--98019470
47
4.7
46
82
6
202
28
15
26
29
1.96
98019261--98019514
42
5.6
48
82
10
220
29
14
26
29
1.95
98021004--98021122
40
3.0
40
79
7
109
31
25
21
22
1.98
98021041--98021122
38
2.1
40
84
8
107
28
24
23
24
2.00
98026543--98026585
21
2.0
22
86
4
61
18
0
9
72
1.11
98026543--98026601
22
2.8
21
78
12
59
20
0
10
69
1.17
98028948--98029101
47
3.2
47
80
3
157
22
12
29
35
1.92
98028968--98029100
46
2.9
47
80
4
144
23
13
29
33
1.93
98032373--98032411
20
2.0
20
89
0
60
53
15
12
17
1.72
98035721--98035754
13
2.6
13
90
0
50
23
0
0
76
0.79
98035858--98035907
23
2.3
21
82
6
64
52
12
4
32
1.57
98037215--98037277
19
3.3
19
72
26
60
17
4
0
77
0.93
98037229--98037277
14
3.8
13
78
21
50
18
4
0
77
0.92
98037219--98037264
24
1.9
24
86
8
67
21
6
0
71
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98037707--98037779
36
2.0
36
100
0
146
39
8
10
41
1.70
98048372--98048751
195
1.9
196
89
0
591
36
21
11
31
1.89
98053103--98053217
44
2.6
44
83
2
140
35
13
22
28
1.92
98053103--98053236
46
3.0
45
80
4
135
35
13
23
27
1.93
98068765--98068833
29
2.4
28
79
11
77
30
4
5
59
1.40
98070368--98070443
4
19.0
4
100
0
152
25
0
25
50
1.50
98078046--98078076
2
15.5
2
100
0
62
51
0
0
48
1.00
98090656--98090703
24
2.0
24
100
0
96
20
33
8
37
1.83
98099326--98099355
15
2.0
15
93
0
51
50
0
13
36
1.42
98116576--98116621
12
3.9
12
91
2
67
30
0
0
69
0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325