genome.fa.s4.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  137  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41667604--41667652	24	2.0	24	96	0	89	26	20	10	42	1.84
41669146--41669180	12	2.9	12	95	0	61	37	17	11	34	1.85
41676999--41677064	28	2.4	28	78	0	78	15	18	46	19	1.83
41683663--41683699	18	2.1	18	94	0	65	24	18	5	51	1.67
41684478--41684856	48	7.9	48	77	7	340	27	17	27	27	1.98
41684478--41684858	96	3.9	96	87	0	501	27	17	27	27	1.98
41684479--41684856	144	2.6	146	80	7	414	27	17	27	27	1.98
41691793--41692237	50	8.8	50	75	3	365	25	17	25	30	1.97
41691793--41692025	101	2.3	102	83	0	288	24	17	26	32	1.97
41691842--41692234	151	2.6	151	87	0	554	25	18	25	30	1.98
41691995--41692226	101	2.3	100	81	3	252	27	18	25	29	1.98
41707717--41707876	29	5.5	30	88	8	222	27	25	13	33	1.94
41707717--41707876	59	2.8	57	89	4	223	27	25	13	33	1.94
41708359--41708386	14	2.0	14	100	0	56	42	14	0	42	1.45
41715646--41715746	29	3.5	29	81	9	116	28	26	13	30	1.94
41715645--41715746	28	3.5	29	81	6	109	28	27	13	30	1.94
41722870--41723079	40	5.2	40	87	2	305	25	24	28	21	1.99
41724783--41724831	17	2.8	18	74	22	50	24	18	22	34	1.96
41725654--41725804	40	3.8	40	80	6	164	25	21	27	24	1.99
41736342--41736404	27	2.3	27	88	0	90	36	15	22	25	1.94
41738858--41739038	40	4.5	40	81	7	197	26	23	25	24	2.00
41738861--41739038	80	2.2	81	83	3	225	26	23	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41738860--41739078	80	2.7	80	79	5	201	26	23	25	24	2.00
41741933--41742082	67	2.2	67	81	8	171	32	17	28	21	1.96
41741957--41742140	67	2.8	64	77	8	194	29	17	29	22	1.97
41754243--41754344	29	3.6	29	80	5	109	21	16	32	29	1.95
41759843--41759927	42	2.0	42	100	0	170	32	14	11	41	1.82
41762220--41762322	29	3.6	28	81	5	116	21	16	33	29	1.95
41764167--41764200	12	2.8	12	95	0	59	23	32	38	5	1.79
41766187--41766410	49	4.5	50	79	3	229	29	25	18	25	1.98
41769060--41769117	29	2.0	29	100	0	116	44	13	17	24	1.85
41771375--41771619	49	4.9	49	79	4	267	28	25	17	28	1.98
41774983--41775154	46	3.7	46	77	14	174	27	27	23	21	1.99
41774988--41775158	93	1.8	93	89	2	272	27	28	23	21	1.99
41781966--41782136	46	3.7	46	75	14	181	28	26	21	22	1.99
41781971--41782140	92	1.8	93	91	1	279	28	27	21	22	1.99
41792084--41792121	20	1.9	20	88	0	58	52	10	2	34	1.50
41792646--41792724	25	3.2	25	69	16	74	41	6	29	22	1.78
41799534--41799672	51	2.9	49	75	12	139	33	28	15	22	1.95
41804827--41805069	24	10.1	24	97	0	441	20	17	24	36	1.94
41813193--41813359	40	4.2	40	80	2	167	23	27	22	26	1.99
41813209--41813359	80	1.9	79	83	6	198	23	27	22	25	2.00
41816120--41816286	40	4.2	40	77	9	164	25	22	27	23	2.00
41823621--41823793	46	3.7	46	80	13	219	21	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41823618--41823788	93	1.8	93	96	0	315	21	21	29	28	1.98
41824014--41824051	19	2.0	20	85	15	53	36	0	23	39	1.55
41836583--41836758	40	4.5	39	90	5	266	23	21	28	26	1.99
41836583--41836758	79	2.2	80	89	6	270	23	21	28	26	1.99
41843311--41843356	22	2.1	22	100	0	92	21	26	13	39	1.90
41847282--41847315	17	2.0	17	88	0	50	70	0	0	29	0.87
41853258--41853307	21	2.5	20	78	15	57	60	4	0	36	1.16
41853307--41853379	35	2.1	35	87	10	105	28	5	8	57	1.50
41857525--41857578	25	2.1	26	86	3	74	14	11	9	64	1.48
41859643--41859915	47	5.8	47	89	1	393	28	31	7	32	1.85
41868204--41868390	49	3.8	49	86	1	275	25	16	27	29	1.97
41868196--41868389	99	2.0	99	95	0	352	25	17	28	29	1.97
41869794--41869866	30	2.4	30	93	0	119	20	34	24	20	1.97
41872316--41872530	49	4.3	49	86	2	277	27	26	19	25	1.99
41874944--41875003	30	2.0	30	87	6	86	63	16	10	10	1.51
41874944--41874999	15	3.7	15	81	9	69	66	12	10	10	1.46
41877933--41878122	48	3.9	49	87	2	265	28	27	17	26	1.97
41885501--41885649	38	3.9	38	84	5	174	22	21	25	30	1.99
41893546--41893734	38	4.9	38	83	6	193	21	22	25	30	1.99
41894594--41894638	2	22.5	2	100	0	90	51	0	0	48	1.00
41901464--41901562	51	2.0	50	87	2	144	26	13	25	35	1.92
41903391--41903433	22	2.0	22	85	0	59	11	27	34	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41911388--41911485	42	2.3	42	85	3	135	33	24	17	24	1.96
41911387--41911527	42	3.3	42	82	6	133	31	24	17	25	1.97
41915531--41915720	40	4.8	40	75	9	174	25	26	22	25	2.00
41915535--41915720	80	2.3	81	82	12	233	25	25	22	26	2.00
41923647--41923797	40	3.8	40	80	7	173	24	27	23	24	2.00
41923651--41923837	80	2.3	81	81	13	226	25	26	22	26	2.00
41937085--41937218	37	3.6	37	98	0	259	25	32	17	24	1.96
41937253--41937731	48	10.0	48	92	0	742	30	26	7	35	1.83
41944248--41944275	12	2.3	12	100	0	56	32	17	21	28	1.96
41944284--41944381	44	2.3	42	82	8	117	31	22	19	26	1.98
41949769--41950139	48	7.8	48	82	4	401	25	15	30	28	1.96
41952072--41952135	31	2.1	31	90	0	101	25	23	15	35	1.94
41952328--41952495	24	7.0	24	91	7	270	27	20	20	30	1.98
41952552--41952608	9	5.9	9	73	15	51	35	21	8	35	1.84
41952548--41952610	20	3.2	20	95	0	117	31	19	12	36	1.89
41952647--41952693	24	1.9	25	86	4	69	25	14	25	34	1.94
41959265--41959317	14	3.6	14	74	16	54	35	15	5	43	1.70
41960175--41960238	31	2.1	31	90	0	101	25	23	15	35	1.94
41960431--41960550	24	5.0	24	86	10	165	28	21	20	30	1.98
41960452--41960549	47	2.1	47	92	5	162	29	20	19	30	1.97
41960602--41960664	20	3.2	20	93	0	108	31	17	12	38	1.87
41962898--41963119	24	9.1	24	94	2	363	20	18	24	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41965043--41965171	39	3.3	39	75	8	127	24	23	27	24	2.00
41972940--41973085	40	3.8	39	78	4	138	27	23	26	21	1.99
41972940--41973104	78	2.1	78	82	7	201	26	23	27	23	2.00
41984486--41984589	42	2.4	43	85	1	129	18	18	31	31	1.95
41984486--41984600	43	2.7	42	84	1	131	20	16	31	32	1.94
41986043--41986072	2	14.5	2	93	6	51	50	3	0	46	1.18
41989172--41989243	35	2.1	35	100	0	144	37	22	29	11	1.88
41993543--41993567	2	12.5	2	100	0	50	52	0	0	48	1.00
41995021--41995081	30	2.0	30	83	0	77	31	22	8	37	1.84
42010752--42010782	16	1.9	16	93	0	53	35	22	0	41	1.54
42010749--42010788	20	2.0	20	85	0	53	37	22	0	40	1.54
42010975--42011229	55	4.8	54	79	7	238	21	24	16	36	1.94
42011022--42011222	108	1.8	110	86	4	291	22	24	17	34	1.96
42020946--42021015	27	2.5	28	88	2	106	31	25	14	28	1.95
42028876--42028945	27	2.5	28	88	2	106	31	25	14	28	1.95
42032785--42032858	32	2.4	31	81	2	76	20	29	32	17	1.95
42038248--42038422	45	3.8	46	79	13	216	29	29	20	20	1.98
42038255--42038425	93	1.8	92	96	1	315	28	29	21	21	1.98
42045821--42045992	93	1.8	93	93	2	301	28	30	20	20	1.98
42045814--42045989	46	3.8	46	79	14	200	29	30	20	19	1.97
42053528--42053564	14	2.6	14	100	0	74	75	0	13	10	1.04
42056062--42056098	6	6.5	6	84	12	51	83	13	0	2	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42056053--42056113	11	5.3	11	77	13	52	77	9	1	11	1.07
42056062--42056108	17	2.7	17	75	15	51	78	12	0	8	0.95
42056062--42056098	11	3.3	11	88	7	56	83	13	0	2	0.74
42058954--42058979	12	2.2	12	100	0	52	23	38	23	15	1.92
42062708--42062902	40	4.9	40	84	3	243	23	23	28	25	2.00
42062712--42062927	40	5.5	40	83	5	183	23	23	28	24	2.00
42065185--42065227	22	1.9	23	81	13	54	46	9	30	13	1.75
42070881--42071105	40	5.7	40	85	2	240	24	21	27	27	1.99
42070916--42071130	40	5.4	40	83	4	179	23	23	27	25	2.00
42080109--42080298	50	3.8	49	79	4	202	31	26	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325