genome.fa.s4.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  132  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39919970--39920073	23	4.6	23	87	2	131	42	25	16	16	1.88
39925686--39925907	42	5.2	43	76	9	120	27	21	22	28	1.99
39925729--39925985	43	6.0	43	78	2	223	30	20	17	31	1.95
39925686--39925985	85	3.5	85	77	6	250	29	20	19	30	1.97
39925760--39925985	86	2.6	84	80	4	247	31	19	16	32	1.94
39929330--39929472	49	2.9	49	86	0	205	32	13	17	37	1.88
39929674--39929766	24	3.9	24	90	2	134	37	3	7	51	1.46
39932463--39932791	43	7.6	43	79	4	205	29	24	19	26	1.98
39932482--39932793	88	3.6	88	83	3	373	30	24	19	25	1.98
39933094--39933134	21	2.0	21	100	0	82	0	53	19	26	1.45
39933692--39933729	19	2.1	18	85	9	51	52	0	7	39	1.31
39940484--39940735	133	1.9	133	98	0	486	51	18	10	20	1.75
39941801--39941832	13	2.5	13	95	5	57	46	9	18	25	1.79
39944003--39944045	22	2.0	22	85	0	59	41	32	2	23	1.67
39944537--39944612	39	2.0	38	85	7	102	40	23	5	30	1.77
39944791--39945091	41	7.4	41	89	2	430	19	23	23	34	1.97
39944791--39945091	122	2.5	122	88	2	435	19	23	23	34	1.97
39944791--39945155	163	2.2	163	84	1	464	19	23	22	34	1.97
39944791--39945162	41	9.1	40	86	3	420	19	22	22	35	1.96
39945256--39945499	122	2.0	121	92	0	407	35	31	11	21	1.90
39945497--39945530	15	2.3	15	89	0	50	44	41	2	11	1.56
39946098--39946141	20	2.2	20	87	0	61	36	29	2	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39946227--39946348	43	2.9	42	75	7	129	31	22	15	29	1.95
39956932--39956971	18	2.2	18	86	0	53	25	2	5	67	1.23
39957334--39957368	16	2.2	16	89	0	52	54	14	11	20	1.70
39957636--39957675	21	2.0	21	85	5	55	72	2	10	15	1.21
39959432--39959566	50	2.7	50	83	0	171	30	16	22	30	1.96
39961274--39961311	20	1.9	20	88	0	58	34	2	10	52	1.50
39962937--39963005	27	2.6	27	93	4	113	44	26	10	18	1.81
39969250--39969287	20	1.9	20	88	0	58	34	2	10	52	1.50
39970913--39970981	27	2.6	27	93	4	113	44	26	10	18	1.81
39971520--39971708	105	1.8	105	100	0	378	38	7	14	39	1.75
39971936--39972111	46	3.8	46	81	10	232	20	21	29	28	1.98
39971932--39972103	93	1.8	93	96	0	317	20	22	30	27	1.98
39975064--39975132	15	4.6	15	83	0	84	11	17	13	57	1.64
39975055--39975142	30	3.0	30	81	8	99	10	17	15	56	1.66
39977525--39977700	46	3.8	46	81	10	232	20	21	29	28	1.98
39977521--39977692	93	1.8	93	96	0	317	20	22	30	27	1.98
39980906--39980962	26	2.2	26	81	9	62	29	19	15	35	1.93
39988279--39988397	27	4.4	26	83	7	105	36	18	21	22	1.95
39988299--39988413	28	4.2	28	88	5	155	34	22	21	20	1.97
39988275--39988417	56	2.6	53	83	12	159	36	20	21	21	1.95
39988518--39988581	26	2.4	27	86	2	85	26	14	25	34	1.94
40000502--40000539	20	1.9	20	94	0	67	34	28	5	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40007283--40007434	29	5.3	29	77	9	145	27	13	30	27	1.94
40009504--40009883	48	7.9	48	74	5	268	26	25	18	29	1.98
40009560--40009883	96	3.4	94	78	7	339	26	26	18	28	1.98
40014651--40014910	39	6.7	40	91	4	408	26	27	21	25	1.99
40022598--40022849	39	6.4	39	88	5	332	25	27	21	25	1.99
40022631--40022856	39	5.7	40	89	5	336	26	27	21	24	1.99
40022631--40022856	79	2.9	80	90	6	354	26	27	21	24	1.99
40025372--40025616	39	6.3	39	87	0	330	19	21	28	31	1.97
40025372--40025616	117	2.1	116	89	0	364	19	21	28	31	1.97
40028080--40028258	48	3.7	48	74	9	152	31	14	25	28	1.95
40028080--40028359	96	2.9	95	81	7	298	30	16	26	26	1.97
40036097--40036475	48	7.9	48	77	5	327	30	18	26	25	1.98
40036097--40036475	96	3.9	96	79	4	383	30	18	26	25	1.98
40036101--40036480	144	2.6	143	80	5	424	30	19	25	24	1.98
40037669--40037729	21	3.0	21	80	2	70	11	37	26	24	1.89
40044371--40044545	45	3.8	46	79	13	216	20	20	29	29	1.98
40051795--40051968	46	3.8	45	76	15	187	20	19	29	29	1.97
40051792--40051961	91	1.8	93	92	2	290	21	20	30	28	1.98
40060154--40060325	93	1.8	93	92	0	290	27	28	20	23	1.99
40060146--40060321	46	3.8	46	79	10	196	28	27	20	23	1.99
40060197--40060340	46	3.1	44	71	21	116	29	27	20	22	1.98
40062350--40062728	96	3.9	96	81	4	415	27	27	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40062350--40062732	48	7.9	48	80	0	361	27	27	18	26	1.98
40072692--40072849	68	2.3	68	78	11	169	20	29	15	34	1.94
40075106--40075143	17	2.4	16	91	8	60	23	13	31	31	1.93
40075876--40076093	46	4.7	46	88	2	296	22	24	13	38	1.91
40079475--40079641	40	4.2	40	81	2	176	24	27	22	25	2.00
40079491--40079641	80	1.9	79	83	6	198	23	27	22	25	2.00
40080467--40080512	17	2.5	19	74	22	53	34	23	17	23	1.96
40087485--40087651	40	4.2	40	81	2	176	24	27	22	25	2.00
40087501--40087651	80	1.9	79	83	6	198	23	27	22	25	2.00
40088477--40088522	17	2.5	19	74	22	53	34	23	17	23	1.96
40089438--40089489	11	4.7	11	76	9	52	63	3	0	32	1.12
40115148--40115176	6	4.8	6	100	0	58	17	0	0	82	0.66
40118766--40118845	25	2.9	28	82	14	96	46	10	18	25	1.80
40120296--40120367	31	2.4	31	78	2	83	23	11	22	43	1.85
40122657--40122787	63	2.1	63	92	0	217	38	11	12	38	1.79
40124091--40124179	46	2.0	44	82	8	108	40	8	19	31	1.82
40128331--40128377	22	2.2	21	81	11	51	27	0	4	68	1.08
40139539--40139595	15	3.9	14	82	11	69	33	0	15	50	1.44
40139966--40140052	21	4.0	23	80	10	101	16	21	24	37	1.93
40141707--40141742	2	18.0	2	100	0	72	50	0	0	50	1.00
40143217--40143382	50	3.3	49	81	12	176	23	15	28	32	1.95
40143271--40143352	26	3.2	25	66	19	62	24	18	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40143355--40143416	31	2.0	31	90	0	97	27	9	30	32	1.89
40143272--40143517	132	1.9	131	86	2	350	25	16	28	29	1.97
40143393--40143589	49	4.0	49	77	4	171	24	18	27	29	1.98
40143394--40143589	50	3.9	50	77	5	155	24	18	27	29	1.98
40143789--40143818	16	1.9	15	93	6	51	43	0	23	33	1.54
40149013--40149094	26	3.2	26	94	0	146	31	6	25	36	1.81
40153346--40153431	18	4.7	18	80	1	100	40	13	8	37	1.75
40153346--40153434	36	2.4	37	81	1	117	39	14	8	37	1.78
40153559--40153662	47	2.2	47	91	0	163	43	22	18	16	1.88
40161865--40161948	14	5.6	14	78	9	78	63	2	0	34	1.08
40162292--40162334	11	3.8	11	81	3	50	53	0	2	44	1.13
40163432--40163527	48	2.0	46	90	4	147	27	18	10	43	1.82
40164346--40164395	25	1.9	27	84	8	68	50	0	0	50	1.00
40169104--40169288	40	4.7	40	81	7	209	24	21	27	27	1.99
40169105--40169288	79	2.3	81	82	7	225	24	21	27	26	1.99
40169156--40169321	79	2.1	79	79	8	178	26	19	27	26	1.99
40173949--40173993	22	2.0	22	82	0	54	33	11	8	46	1.70
40175192--40175234	17	2.5	17	80	3	50	4	16	2	76	1.05
40175190--40175226	15	2.4	16	83	16	51	2	16	0	81	0.81
40192733--40192884	43	3.5	43	78	4	164	30	16	22	30	1.96
40192829--40192926	42	2.3	42	79	8	101	30	18	19	31	1.96
40203564--40203597	5	6.6	5	93	6	59	82	0	0	17	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40203563--40203597	16	2.2	16	100	0	70	82	0	0	17	0.66
40216361--40216386	12	2.2	12	100	0	52	69	23	7	0	1.14
40219854--40219893	21	2.0	20	90	5	62	42	22	0	35	1.54
40223400--40223571	93	1.8	93	96	0	317	27	29	21	20	1.98
40223393--40223568	46	3.8	46	79	12	216	28	29	21	20	1.98
40225485--40225572	30	3.0	30	79	9	92	57	15	15	10	1.64
40225485--40225560	15	5.1	15	81	7	84	57	14	17	10	1.64
40228519--40228689	93	1.8	93	96	0	315	28	29	21	21	1.98
40228511--40228686	46	3.8	46	80	12	225	28	28	21	21	1.98
40235496--40235645	40	3.8	39	80	3	140	23	28	22	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325