genome.fa.s4.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  117  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35061992--35062016	9	2.8	9	100	0	50	12	36	24	28	1.91
35062001--35062080	29	2.8	29	88	0	106	25	33	16	25	1.95
35062128--35062206	40	2.0	40	89	0	122	26	27	20	25	1.99
35062332--35062362	16	2.0	15	93	6	53	22	25	6	45	1.76
35079984--35080043	30	2.0	30	100	0	120	30	6	10	53	1.60
35081207--35081262	18	3.1	18	84	5	69	28	19	1	50	1.58
35084841--35084942	29	3.5	29	89	0	150	22	33	15	28	1.95
35086995--35087137	39	3.7	39	90	2	234	26	20	30	22	1.99
35086996--35087177	77	2.3	79	89	2	269	24	22	29	23	1.99
35095513--35095577	29	2.2	29	100	0	130	29	15	27	27	1.96
35104635--35104717	24	3.5	24	94	0	148	22	16	22	37	1.94
35104635--35104743	48	2.3	48	88	3	157	25	18	22	33	1.96
35116877--35116998	27	4.5	27	83	2	138	36	22	12	27	1.90
35116950--35117010	27	2.3	27	85	5	79	45	16	9	27	1.79
35117298--35117419	43	2.8	43	79	0	136	23	20	30	25	1.99
35117447--35117521	22	3.4	22	76	10	82	16	24	24	36	1.94
35117449--35117540	44	2.1	44	80	8	98	18	22	20	38	1.94
35117643--35117719	26	3.0	26	80	0	82	19	22	22	36	1.95
35119843--35119889	18	2.5	20	89	6	71	42	17	0	40	1.49
35119889--35119968	18	4.4	18	82	0	97	38	17	8	35	1.81
35119880--35119968	36	2.4	36	81	3	97	39	17	7	34	1.79
35126840--35126892	27	2.0	27	92	0	88	35	13	24	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35130297--35130349	20	2.7	20	82	2	63	41	13	11	33	1.80
35131138--35131178	21	2.0	21	85	9	57	48	14	4	31	1.65
35131263--35131301	18	2.2	18	95	0	69	28	17	5	48	1.68
35137535--35137597	33	1.9	32	84	12	83	42	0	1	55	1.09
35138868--35138892	11	2.3	11	100	0	50	76	0	0	24	0.80
35142981--35143130	39	3.8	40	78	7	162	24	26	23	25	2.00
35151035--35151227	40	4.8	39	76	9	140	22	26	24	26	2.00
35151035--35151227	80	2.4	80	82	2	217	22	26	24	26	2.00
35151077--35151228	40	3.8	39	82	4	160	24	26	23	25	2.00
35156635--35157075	47	9.4	47	96	0	774	31	7	30	29	1.86
35174762--35174814	25	2.2	24	86	3	70	35	24	24	15	1.94
35175919--35175947	13	2.2	13	100	0	58	31	6	13	48	1.69
35177522--35177595	12	6.2	12	95	0	67	59	0	6	33	1.24
35177540--35177598	3	19.7	3	100	0	118	66	0	0	33	0.92
35180433--35180607	46	3.8	46	79	11	155	28	19	29	22	1.98
35180442--35180646	46	4.5	44	76	11	146	28	19	28	22	1.98
35181758--35181797	21	2.0	21	85	5	55	10	30	32	27	1.89
35187269--35187366	50	2.0	50	100	0	196	38	16	9	35	1.80
35188011--35188185	46	3.8	46	78	6	174	28	21	29	21	1.98
35191687--35192526	48	17.0	48	78	11	656	34	5	26	32	1.81
35191909--35191952	20	2.2	20	95	0	79	40	0	22	36	1.54
35191862--35192000	68	2.0	68	92	0	233	35	5	23	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35191814--35192048	116	2.0	116	92	0	389	34	5	25	34	1.79
35191766--35192096	164	2.0	164	92	0	545	34	5	26	33	1.80
35192666--35192768	37	2.8	37	92	0	170	24	20	33	22	1.97
35193941--35194346	40	10.1	40	89	0	596	24	20	28	26	1.99
35194508--35194558	25	2.0	25	81	7	59	33	15	29	21	1.94
35196462--35196530	28	2.5	28	95	2	122	18	10	27	43	1.82
35201143--35201862	48	15.0	48	94	0	1228	34	5	27	32	1.81
35202002--35202104	37	2.8	37	92	0	170	24	21	32	22	1.98
35205575--35205605	15	2.1	15	100	0	62	19	12	19	48	1.81
35212483--35212546	33	2.0	33	84	9	87	28	26	20	25	1.99
35212795--35212924	65	2.0	64	96	1	242	43	18	13	24	1.87
35212927--35212983	26	2.2	26	83	3	69	26	19	19	35	1.95
35225249--35225423	46	3.8	45	79	7	190	29	30	19	21	1.97
35225300--35225443	46	3.1	46	72	14	143	29	29	20	21	1.98
35227926--35227970	23	2.0	23	82	8	56	71	4	4	20	1.21
35236270--35236400	29	4.5	29	77	5	86	23	32	16	27	1.96
35238027--35238223	27	7.3	27	81	4	155	39	22	9	27	1.86
35238250--35238380	27	4.9	27	84	0	165	35	17	22	25	1.95
35238526--35238556	16	1.9	16	93	0	53	29	19	16	35	1.93
35238898--35238959	22	2.8	22	78	9	72	19	24	22	33	1.97
35239248--35239308	25	2.4	25	91	0	95	26	14	11	47	1.78
35239304--35239382	6	12.8	6	73	15	63	17	15	15	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35239304--35239372	25	2.8	25	90	0	120	17	15	15	50	1.78
35239272--35239361	37	2.4	37	81	5	101	21	17	14	46	1.83
35239248--35239345	31	3.2	31	71	16	94	23	15	13	47	1.80
35239248--35239382	62	2.2	62	86	0	180	21	15	13	49	1.78
35239248--35239379	31	4.5	31	72	19	86	21	15	13	49	1.79
35245379--35245508	50	2.6	49	85	3	163	32	26	15	25	1.95
35245379--35245565	101	1.9	99	84	4	250	29	27	16	25	1.97
35254725--35254909	67	2.9	64	75	11	180	29	17	30	23	1.97
35256683--35256814	51	2.7	48	78	3	147	26	18	25	29	1.98
35272761--35272872	41	2.7	42	84	2	127	30	23	12	33	1.92
35275126--35275181	22	2.5	22	100	0	112	17	19	32	30	1.95
35276523--35276555	2	17.0	2	87	6	50	48	3	0	48	1.17
35286096--35286137	2	21.0	2	95	0	75	47	0	2	50	1.14
35286241--35286392	56	2.7	55	87	4	205	28	14	25	31	1.95
35292397--35292606	56	3.8	56	80	1	215	30	15	22	31	1.95
35294820--35295099	27	10.4	27	86	0	353	35	17	21	26	1.95
35295760--35295889	27	4.6	26	69	17	80	22	26	19	32	1.97
35300918--35301086	27	6.3	27	86	2	223	36	20	18	24	1.95
35300914--35301086	81	2.1	81	88	0	247	35	20	19	24	1.95
35301079--35301151	27	2.7	27	89	0	92	23	21	16	38	1.93
35318083--35318166	24	3.5	24	65	9	73	30	21	19	28	1.97
35319763--35319906	39	3.7	39	92	0	243	26	20	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35319764--35319946	78	2.3	79	90	1	278	24	22	29	23	1.99
35329111--35329308	71	2.8	70	92	3	294	33	17	28	20	1.95
35329177--35329294	41	3.1	41	60	28	98	32	17	28	21	1.96
35329145--35329308	71	2.3	71	100	0	328	35	17	28	18	1.94
35336676--35336873	71	2.8	70	92	3	294	33	17	28	20	1.95
35336742--35336859	41	3.1	41	60	28	98	32	17	28	21	1.96
35336710--35336873	71	2.3	71	100	0	328	35	17	28	18	1.94
35345818--35346103	40	7.2	40	93	1	459	26	25	23	24	2.00
35347475--35347500	13	2.0	13	100	0	52	61	7	0	30	1.24
35350900--35351067	40	4.2	40	80	4	169	22	27	24	25	2.00
35357260--35357502	39	6.2	40	92	3	388	27	25	23	23	2.00
35361066--35361100	14	2.5	14	85	0	52	80	0	5	14	0.89
35363516--35363703	75	2.4	78	89	3	283	24	22	31	21	1.98
35363516--35363703	39	4.9	39	87	4	274	24	22	31	21	1.98
35363522--35363733	39	5.5	40	85	3	177	24	23	31	20	1.98
35371597--35371786	39	4.9	39	93	1	310	24	22	31	21	1.98
35378953--35378997	23	2.0	23	100	0	90	44	22	24	8	1.81
35382525--35382560	6	5.8	6	96	3	63	13	0	0	86	0.58
35391956--35392029	29	2.6	29	95	0	139	27	31	14	27	1.95
35391897--35392029	58	2.3	58	80	2	133	24	33	17	24	1.96
35399834--35399907	29	2.6	29	95	0	139	27	31	14	27	1.95
35399775--35399907	58	2.3	58	80	2	133	24	33	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35410696--35410816	44	2.7	44	81	8	129	28	19	30	22	1.98
35413567--35413636	27	2.5	28	95	2	124	28	14	27	30	1.95
35413567--35413648	27	3.0	27	85	8	78	29	15	24	30	1.96
35420522--35420591	27	2.5	28	95	2	124	28	14	27	30	1.95
35420522--35420603	27	3.0	27	85	8	78	29	15	24	30	1.96
35428404--35428502	27	3.7	27	82	5	128	32	22	7	38	1.81
35428385--35428510	54	2.3	54	75	5	130	35	23	6	34	1.81
35428493--35428675	27	6.8	27	87	1	260	38	22	11	27	1.88
35432345--35432386	18	2.3	18	87	0	57	50	7	7	35	1.57
35432352--35432388	18	2.1	18	94	0	65	43	8	5	43	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325