genome.fa.s4.2.7.7.80.10.50.1000.308.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  308  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93821467--93821497	15	2.1	15	100	0	62	54	6	6	32	1.51
93838235--93838309	29	2.6	29	89	4	107	26	16	32	25	1.96
93838543--93838575	17	2.1	16	88	11	50	30	0	0	69	0.88
93838622--93838662	21	2.0	21	90	0	64	19	0	7	73	1.07
93838610--93838668	12	5.2	12	78	12	52	23	0	8	67	1.17
93838640--93838670	12	2.6	12	94	0	53	22	0	3	74	0.96
93842293--93842363	18	3.9	19	87	3	85	36	11	19	32	1.87
93844300--93844343	9	4.8	10	81	13	51	29	0	0	70	0.88
93845631--93845681	25	2.1	24	89	10	77	62	1	0	35	1.06
93845659--93845697	17	2.3	17	91	8	62	71	2	0	25	0.98
93845779--93845845	32	2.1	32	86	8	93	35	10	11	41	1.76
93849741--93849794	3	18.0	3	100	0	108	66	0	0	33	0.92
93856185--93856241	27	2.0	27	83	6	69	57	3	0	38	1.16
93862438--93862465	12	2.3	12	100	0	56	71	0	7	21	1.09
93862734--93862770	6	6.2	6	100	0	74	83	0	16	0	0.64
93862865--93862897	11	3.0	11	91	8	50	33	0	12	54	1.37
93863353--93863809	216	2.1	214	94	1	799	39	10	6	43	1.65
93863967--93864000	17	2.1	17	88	5	52	58	0	2	38	1.13
93864237--93864313	32	2.4	31	82	4	82	68	2	10	18	1.29
93864268--93864313	15	2.9	15	81	12	56	69	2	13	15	1.28
93864272--93864335	19	3.4	18	77	12	67	70	3	9	17	1.27
93864310--93864351	13	3.3	13	77	16	52	73	4	2	19	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93864310--93864356	24	1.9	25	91	4	78	70	4	4	21	1.22
93864322--93864661	137	2.5	136	89	2	529	58	6	7	27	1.51
93865631--93865719	44	2.0	44	100	0	178	30	17	24	26	1.98
93867553--93867631	41	1.9	41	82	5	97	11	24	32	31	1.90
93869449--93869588	72	1.9	72	88	5	212	23	27	16	32	1.96
93870091--93870241	63	2.4	63	98	0	293	47	11	3	37	1.58
93873443--93873498	27	2.1	27	93	0	94	25	30	32	12	1.92
93878529--93878574	24	2.0	23	91	4	74	32	4	0	63	1.14
93879897--93879933	5	7.4	5	100	0	74	37	21	18	21	1.94
93880065--93880107	21	2.0	21	86	0	59	30	6	4	58	1.45
93886254--93886282	15	1.9	15	100	0	58	34	20	27	17	1.95
93887110--93887168	27	2.2	27	87	0	91	38	27	25	8	1.84
93889463--93889493	15	2.1	15	100	0	62	29	6	25	38	1.81
93892784--93892849	19	3.2	21	87	8	73	36	18	9	36	1.82
93892801--93892879	19	4.2	19	90	9	126	35	17	10	36	1.84
93892824--93892879	17	3.4	15	85	11	51	35	17	10	35	1.85
93892801--93892879	36	2.1	39	90	9	128	35	17	10	36	1.84
93893714--93893744	16	1.9	16	100	0	62	45	16	38	0	1.47
93904323--93904361	10	3.9	10	80	12	53	20	7	2	69	1.26
93905086--93905165	40	2.1	40	81	9	96	28	10	1	60	1.37
93906701--93906773	33	2.2	33	82	0	83	36	20	13	28	1.91
93908161--93908219	23	2.6	23	86	5	84	18	3	0	77	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93914357--93914463	25	4.2	25	92	2	171	36	24	5	33	1.79
93914357--93914463	51	2.1	50	91	5	171	36	24	5	33	1.79
93920575--93920656	31	2.5	33	78	7	96	14	2	19	63	1.41
93920729--93921024	43	6.9	43	94	0	502	24	32	17	25	1.97
93922003--93922031	11	2.6	11	100	0	58	6	17	17	58	1.59
93927964--93928142	41	4.4	41	93	0	306	36	24	22	16	1.94
93928299--93928396	7	13.4	7	72	8	61	26	1	25	46	1.59
93928307--93928391	21	3.9	21	77	11	98	27	1	27	44	1.62
93928314--93928407	46	2.0	46	95	4	172	29	2	25	42	1.67
93928492--93928565	7	10.3	7	74	8	51	21	0	41	36	1.53
93928646--93928709	22	2.9	22	92	0	110	26	3	46	23	1.67
93928655--93928713	7	8.1	7	74	7	55	22	3	49	25	1.65
93928734--93928886	14	10.9	14	64	15	57	24	0	34	40	1.60
93928734--93928799	28	2.3	29	87	5	91	21	0	31	46	1.51
93929069--93929287	68	3.0	74	86	8	326	54	10	9	25	1.65
93929415--93929462	18	2.6	18	78	12	53	27	37	0	35	1.57
93931800--93931833	17	1.9	18	94	5	61	35	11	29	23	1.90
93932154--93932249	44	2.2	43	90	1	147	26	16	28	29	1.97
93935543--93935570	13	2.2	13	100	0	56	60	7	25	7	1.48
93939269--93939311	20	2.2	20	82	0	50	58	2	4	34	1.32
93950983--93951021	12	3.3	12	82	7	53	35	0	0	64	0.94
93951210--93951240	14	2.2	14	94	0	53	61	12	6	19	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93959160--93959251	18	5.2	18	85	1	123	32	14	23	29	1.94
93959160--93959251	36	2.6	36	91	1	141	32	14	23	29	1.94
93961860--93961898	18	2.2	17	86	13	53	61	2	2	33	1.23
93962351--93962437	24	3.7	24	71	21	76	58	4	4	32	1.39
93962420--93962452	15	2.2	15	89	10	50	66	0	0	33	0.92
93962408--93962515	24	4.3	23	73	18	74	59	3	1	35	1.26
93962409--93962515	13	8.4	13	70	18	73	58	3	1	35	1.26
93962511--93962559	23	2.3	20	79	10	53	53	8	4	34	1.50
93962560--93962610	3	17.3	3	89	4	59	56	0	0	43	0.99
93963098--93963199	50	2.0	50	90	5	161	20	38	13	27	1.90
93964510--93964681	75	2.2	75	85	10	231	36	19	18	25	1.94
93964427--93964815	168	2.4	160	87	6	538	33	21	17	26	1.96
93974380--93974436	26	2.1	27	83	3	71	52	1	15	29	1.53
93977784--93977896	12	9.4	11	70	19	50	58	4	3	33	1.35
93977782--93977848	18	3.8	17	76	18	57	61	1	4	32	1.25
93978048--93978117	29	2.4	29	76	4	79	54	4	4	37	1.40
93978183--93978295	22	4.9	24	74	16	96	55	3	6	34	1.42
93978183--93978393	24	9.6	22	70	22	99	58	3	4	33	1.36
93978287--93978334	15	3.2	15	93	0	87	68	0	0	31	0.90
93978282--93978349	30	2.2	28	78	17	66	63	4	1	30	1.23
93978227--93978397	24	6.8	24	74	19	129	60	4	2	33	1.28
93978345--93978401	11	5.0	11	75	8	51	56	5	1	36	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93978329--93978397	13	5.6	13	68	25	51	55	5	2	36	1.39
93978425--93978462	16	2.5	15	87	8	51	55	10	0	34	1.34
93978497--93978524	3	9.3	3	100	0	56	64	0	0	35	0.94
93979725--93979761	10	3.7	10	88	0	56	62	8	5	24	1.44
93980803--93980840	12	3.2	12	88	0	58	34	0	0	65	0.93
93990063--93990120	29	2.0	30	89	3	91	75	6	1	15	1.09
93990538--93990594	23	2.4	25	80	14	75	56	3	5	35	1.39
93990590--93990649	26	2.3	27	82	11	79	56	6	3	33	1.42
93990891--93990923	16	2.0	17	88	5	50	54	3	6	36	1.41
93990969--93991061	24	3.7	24	71	19	73	53	2	9	34	1.46
93991209--93991268	12	4.6	13	78	15	54	60	3	5	31	1.35
93991199--93991292	34	2.8	32	73	19	84	59	3	4	32	1.33
93991953--93992014	14	4.1	14	76	17	54	24	0	3	72	0.99
94000316--94000560	48	5.1	48	78	4	253	19	17	27	35	1.94
94000313--94000554	96	2.5	96	86	2	326	19	16	28	35	1.94
94008054--94008229	48	3.7	48	82	3	210	18	17	27	36	1.94
94008047--94008229	96	1.9	96	89	0	285	18	17	27	36	1.93
94010676--94010712	19	1.9	19	100	0	74	21	27	27	24	1.99
94013172--94013196	13	1.9	13	100	0	50	36	0	8	56	1.29
94016769--94016794	6	4.3	6	100	0	52	0	0	15	84	0.62
94022897--94023360	255	1.8	255	88	0	705	39	19	12	28	1.88
94024564--94024597	12	2.8	12	90	0	50	8	26	55	8	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94025250--94025282	11	2.8	12	90	9	50	21	3	6	69	1.24
94025358--94025407	21	2.3	22	86	3	66	32	4	8	56	1.47
94025677--94025727	25	2.0	25	85	7	68	23	7	0	68	1.15
94035180--94035270	43	2.1	44	91	2	148	34	27	18	19	1.96
94035244--94035397	44	3.5	42	71	11	123	36	19	22	22	1.95
94035238--94035400	88	1.9	88	89	1	256	36	20	20	22	1.95
94035194--94035389	43	4.5	43	75	6	155	34	21	20	22	1.97
94035760--94035865	43	2.5	42	82	1	113	40	23	16	19	1.91
94036851--94036892	18	2.3	18	100	0	84	23	33	38	4	1.76
94037516--94037548	11	2.8	12	90	9	50	21	3	6	69	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325