genome.fa.s4.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  135  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40977113--40977150	19	2.0	20	85	15	53	39	23	0	36	1.55
40977369--40977539	46	3.7	46	79	12	208	29	27	21	21	1.99
40977374--40977542	92	1.8	91	94	1	302	28	28	21	21	1.99
40977371--40977558	46	4.1	46	73	18	142	28	28	21	21	1.99
40977961--40978020	30	2.0	30	86	0	84	33	25	5	36	1.78
40985863--40985941	29	2.7	29	86	5	106	27	32	15	24	1.95
40987220--40987249	10	3.0	10	100	0	60	30	0	0	70	0.88
40987782--40987819	19	2.0	20	85	15	53	39	23	0	36	1.55
40988048--40988218	93	1.8	93	91	0	279	29	28	20	21	1.98
40988043--40988215	46	3.7	46	76	13	183	30	27	20	21	1.98
40988638--40988697	30	2.0	30	86	0	84	33	25	5	36	1.78
40992843--40993002	29	5.5	30	88	8	213	33	14	25	26	1.94
40992843--40993002	59	2.8	57	88	4	214	33	14	25	26	1.94
40999302--40999461	29	5.5	29	82	4	180	26	16	31	25	1.97
41007210--41007360	40	3.8	40	91	3	218	23	21	28	25	1.99
41015308--41015495	40	4.7	39	88	3	225	25	22	28	24	1.99
41015308--41015515	80	2.6	80	82	3	249	24	22	27	25	2.00
41017366--41017407	13	3.2	13	100	0	84	7	21	47	23	1.75
41018310--41018346	19	1.9	19	88	0	56	43	2	16	37	1.62
41018780--41018843	31	2.0	32	85	8	87	45	0	7	46	1.32
41018622--41018902	154	1.8	153	80	10	340	47	1	11	39	1.49
41018939--41018973	2	18.0	2	94	5	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41019748--41019804	15	3.9	15	90	2	89	35	0	12	52	1.39
41019938--41019965	10	2.8	10	100	0	56	32	0	17	50	1.47
41020186--41020295	37	2.8	37	73	6	94	20	18	28	32	1.96
41020444--41020485	20	2.2	20	87	12	61	50	0	21	28	1.49
41021741--41021811	25	2.8	25	86	0	88	35	22	22	19	1.96
41024230--41024266	18	2.1	18	100	0	74	45	5	16	32	1.70
41027327--41027421	39	2.4	40	91	5	158	24	9	18	47	1.78
41027578--41027627	20	2.5	20	93	0	91	34	22	16	28	1.95
41030440--41030539	51	2.0	51	91	0	164	34	26	9	31	1.87
41035490--41035538	24	2.0	23	81	14	55	34	0	4	61	1.15
41037794--41037832	6	6.5	6	81	0	51	0	20	0	79	0.73
41037788--41037825	12	3.2	12	96	0	67	0	23	2	73	0.95
41037797--41037829	14	2.4	14	85	14	50	0	18	0	81	0.68
41046313--41046350	19	2.0	19	100	0	76	47	5	21	26	1.71
41048392--41048425	17	2.1	17	88	5	52	61	5	11	20	1.50
41064364--41064533	40	4.2	40	84	3	225	25	24	28	21	1.99
41073940--41074225	27	10.6	27	77	7	190	30	9	20	40	1.83
41073939--41074225	54	5.3	54	81	3	294	30	9	20	40	1.83
41073939--41074225	81	3.6	81	83	2	319	30	9	20	40	1.83
41076506--41076635	46	2.8	47	86	8	151	28	29	21	20	1.98
41077060--41077116	30	1.9	30	89	7	89	26	24	5	43	1.75
41083594--41083814	40	5.6	40	80	6	245	23	27	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41094516--41094725	40	5.2	40	87	2	305	25	24	28	21	1.99
41102652--41102861	40	5.2	40	87	2	305	25	24	28	21	1.99
41116770--41116858	37	2.4	37	88	5	137	24	33	16	24	1.96
41116950--41117216	49	5.4	49	91	6	412	29	33	8	27	1.87
41119937--41120035	41	2.4	41	80	11	114	25	24	24	26	2.00
41120519--41120642	29	4.3	29	96	1	223	25	33	15	25	1.95
41122682--41122772	37	2.4	37	92	1	155	24	32	18	24	1.97
41122867--41123129	49	5.4	49	96	0	465	29	32	9	28	1.88
41122867--41123129	97	2.7	98	94	1	465	29	32	9	28	1.88
41125850--41125948	41	2.4	41	80	11	114	25	24	24	26	2.00
41126432--41126557	29	4.3	29	95	1	216	24	33	15	26	1.95
41129138--41129257	36	3.3	37	89	8	192	20	35	19	25	1.96
41129359--41129572	49	4.4	49	95	1	367	29	32	9	28	1.88
41129359--41129572	97	2.2	98	93	0	367	29	32	9	28	1.88
41131408--41131505	28	3.4	29	97	2	182	29	15	28	26	1.96
41131408--41131565	57	2.7	59	84	6	182	27	16	31	25	1.96
41138840--41138968	29	4.4	29	94	1	206	28	15	30	25	1.96
41138840--41139028	29	6.5	29	90	2	170	26	16	31	24	1.96
41138840--41139028	58	3.3	59	85	4	190	26	16	31	24	1.96
41138865--41139028	87	1.9	87	82	5	206	26	16	32	25	1.96
41139061--41139095	2	17.5	2	100	0	70	48	0	0	51	1.00
41144021--41144114	29	3.2	29	98	0	179	29	15	27	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41144017--41144151	58	2.3	58	84	3	175	26	15	31	25	1.96
41144215--41144251	2	18.5	2	100	0	74	48	0	0	51	1.00
41146566--41146759	25	8.0	24	86	6	216	27	22	21	28	1.99
41146588--41146758	25	7.1	23	88	5	225	28	22	21	28	1.99
41146817--41146873	9	5.9	9	73	15	51	35	21	8	35	1.84
41146805--41146875	20	3.5	20	94	0	124	32	21	11	35	1.89
41146810--41146864	11	5.4	11	70	16	55	30	20	12	36	1.90
41146912--41146959	25	1.9	25	86	0	69	25	16	25	33	1.96
41148261--41148310	20	2.6	19	78	6	55	62	0	34	4	1.14
41152793--41152831	13	2.8	14	84	7	53	20	2	0	76	0.90
41152787--41152835	21	2.3	20	86	13	64	20	2	0	77	0.87
41152792--41152843	15	3.3	15	77	17	52	21	1	0	76	0.87
41154385--41154414	15	2.0	15	93	0	51	50	0	10	40	1.36
41154381--41154443	27	2.3	26	76	10	63	38	0	11	50	1.38
41166400--41166765	46	7.7	47	71	16	199	28	19	29	22	1.98
41172920--41173347	48	9.0	47	79	5	324	25	28	18	27	1.98
41173200--41173275	23	3.2	23	66	14	64	28	28	15	26	1.96
41180720--41181049	48	6.9	47	79	2	275	27	28	16	27	1.97
41183765--41183837	31	2.4	31	90	0	110	63	6	19	10	1.49
41186614--41187019	206	2.0	206	91	0	650	33	20	12	33	1.91
41187769--41187821	25	2.1	25	92	0	88	47	24	11	16	1.80
41189918--41190124	40	5.2	40	84	4	242	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41203265--41203347	29	2.9	29	94	0	139	26	31	14	27	1.95
41207699--41207801	29	3.6	28	76	5	98	29	32	16	22	1.96
41219084--41219290	24	8.6	24	96	0	315	33	25	19	21	1.97
41232037--41232137	28	3.5	28	86	6	114	29	13	26	29	1.94
41241700--41241798	29	3.6	27	80	8	94	29	33	16	21	1.95
41245235--41245296	22	2.8	22	78	9	72	35	22	20	20	1.96
41245438--41245559	41	3.0	41	89	1	183	24	29	24	21	1.99
41245817--41246036	27	8.0	27	78	7	131	32	10	17	40	1.82
41245886--41246089	54	3.8	53	78	9	182	30	8	18	42	1.80
41245993--41246097	27	3.9	27	75	6	88	28	8	21	40	1.83
41245899--41246089	81	2.4	80	78	5	188	30	8	19	41	1.81
41246458--41246519	22	2.8	22	76	9	63	32	24	24	19	1.98
41246661--41246782	41	3.0	41	89	1	183	24	29	24	21	1.99
41247042--41247093	26	2.0	27	84	3	70	32	17	15	34	1.91
41247042--41247153	27	4.2	26	81	12	102	33	13	16	37	1.87
41247103--41247309	81	2.6	81	80	3	238	31	7	19	41	1.78
41247058--41247314	27	9.5	27	75	9	152	32	7	19	40	1.80
41247674--41247738	22	3.0	22	77	8	69	32	23	23	21	1.98
41247883--41248001	40	2.9	41	91	1	177	26	29	21	21	1.99
41248261--41248573	27	11.6	27	81	5	202	32	8	18	40	1.81
41248353--41248563	81	2.6	80	79	8	230	30	7	18	43	1.77
41248588--41248634	21	2.2	22	88	11	71	40	51	4	4	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41248949--41249013	22	3.0	22	82	8	87	32	23	24	20	1.98
41249157--41249278	41	3.0	41	88	0	181	25	29	22	22	1.99
41249527--41249585	27	2.2	27	81	0	64	33	16	18	30	1.94
41249537--41249830	27	10.9	27	78	8	197	31	10	19	39	1.85
41249549--41249676	55	2.3	53	81	6	141	32	11	15	40	1.83
41249812--41249910	27	3.7	27	79	12	114	29	18	18	34	1.94
41251005--41251100	24	3.9	24	90	5	140	26	25	17	31	1.97
41257041--41257214	46	3.8	46	80	11	212	22	20	28	28	1.99
41257035--41257207	93	1.9	93	91	2	285	22	20	28	28	1.99
41261243--41261347	24	4.4	24	76	10	83	27	20	16	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325