genome.fa.s4.2.7.7.80.10.50.1000.264.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  264  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82332804--82332881	15	5.2	15	78	9	79	56	15	16	11	1.67
82335832--82336003	93	1.8	93	96	0	317	27	30	22	20	1.98
82335824--82335999	46	3.8	46	81	10	232	28	29	21	20	1.98
82339812--82339846	16	2.1	17	94	5	63	45	11	0	42	1.40
82341540--82341591	20	2.6	20	78	0	59	17	19	26	36	1.94
82344428--82344522	27	3.5	28	76	12	99	33	25	13	27	1.93
82351420--82351444	13	1.9	13	100	0	50	80	0	12	8	0.92
82352513--82352537	13	1.9	13	100	0	50	80	0	20	0	0.72
82359545--82359709	46	3.6	44	81	8	163	24	30	20	23	1.98
82360629--82360674	23	2.1	23	84	8	60	30	30	26	13	1.93
82364179--82364360	94	1.9	94	83	2	231	36	18	15	29	1.92
82364323--82364518	93	2.1	93	82	5	236	38	18	14	27	1.90
82368402--82368457	25	2.3	24	76	11	60	60	0	3	35	1.14
82368394--82368457	33	1.9	34	87	12	98	62	0	3	34	1.11
82368402--82368458	18	3.3	16	75	20	53	61	0	3	35	1.13
82368421--82368508	26	3.5	24	82	14	99	61	1	4	32	1.24
82368422--82368508	12	6.8	13	72	19	53	60	1	4	33	1.24
82368537--82368590	25	2.2	25	90	3	83	66	1	0	31	1.02
82369998--82370520	132	4.0	132	86	2	649	26	27	15	31	1.95
82370000--82370551	44	12.6	44	79	3	529	26	26	15	31	1.96
82370854--82370903	20	2.5	20	96	0	91	34	12	10	44	1.75
82382590--82382645	25	2.3	24	76	11	60	60	0	3	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82382590--82382646	18	3.3	16	75	20	53	61	0	3	35	1.13
82382582--82382645	33	1.9	34	87	12	98	62	0	3	34	1.11
82382610--82382712	12	7.8	13	69	19	56	63	0	3	32	1.19
82382608--82382708	53	1.9	53	80	8	116	63	0	3	31	1.19
82382591--82382713	16	7.6	16	71	22	69	61	0	4	33	1.20
82382742--82382795	25	2.2	24	87	9	74	68	1	0	29	1.00
82382745--82382787	16	2.7	16	82	7	52	69	2	0	27	1.00
82391709--82391741	14	2.4	14	100	0	66	39	21	6	33	1.78
82391519--82391937	223	1.9	223	97	0	793	35	21	7	35	1.82
82392083--82392121	19	2.1	19	85	9	53	35	25	20	17	1.95
82393828--82393930	29	3.6	28	85	5	127	28	26	16	29	1.97
82399654--82399687	2	17.0	2	100	0	68	50	0	0	50	1.00
82400320--82400385	34	2.0	32	83	13	82	56	1	1	40	1.18
82402245--82402287	21	2.0	21	100	0	86	32	13	4	48	1.63
82407540--82407706	43	3.9	43	75	9	144	29	23	16	29	1.97
82417883--82417907	4	6.2	4	100	0	50	76	0	0	24	0.80
82420169--82420236	4	16.8	4	76	14	52	25	4	0	70	1.05
82421829--82421867	11	3.5	11	82	6	51	15	0	10	74	1.07
82421832--82421865	6	5.8	6	86	6	52	14	0	11	73	1.10
82425166--82425196	16	1.9	16	93	0	53	29	22	6	41	1.78
82425397--82425643	55	4.7	53	77	8	218	23	23	16	36	1.94
82429339--82429568	28	8.2	28	81	1	264	31	20	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82431436--82431479	16	2.9	16	83	6	56	50	6	0	43	1.29
82433940--82434055	40	2.9	42	78	14	113	37	13	7	41	1.74
82433939--82434054	20	5.8	19	69	9	63	37	14	7	40	1.75
82434252--82434310	23	2.6	21	82	15	73	38	18	16	25	1.92
82437248--82437277	9	3.3	9	90	0	51	56	6	0	36	1.26
82440372--82440555	40	4.7	40	84	8	234	26	27	21	23	1.99
82440374--82440555	78	2.3	81	84	8	232	26	27	21	24	1.99
82448499--82448678	38	4.7	38	77	16	165	25	27	22	24	2.00
82448501--82448675	78	2.2	76	81	9	185	25	27	21	25	1.99
82450754--82450812	30	2.0	30	90	6	93	42	28	8	20	1.81
82450834--82450994	87	1.8	88	86	4	236	36	19	18	26	1.95
82450923--82451502	74	7.6	76	82	10	579	33	19	17	30	1.95
82451455--82451554	47	2.1	48	94	3	175	33	19	15	33	1.92
82451508--82451727	72	3.0	72	88	7	320	33	19	17	30	1.94
82451776--82451809	13	2.5	13	90	4	50	58	8	11	20	1.59
82451650--82452270	139	4.5	140	97	2	1164	37	20	17	24	1.94
82451831--82451936	54	1.9	54	83	9	135	37	18	15	28	1.91
82452109--82452212	52	1.9	53	81	12	124	38	19	14	27	1.90
82452203--82452367	71	2.3	71	87	6	244	41	21	15	22	1.90
82452243--82452488	122	2.0	123	91	2	397	39	22	13	24	1.91
82452367--82452541	71	2.5	70	86	3	228	34	23	14	28	1.94
82459880--82460514	318	2.0	317	98	0	1225	25	22	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82461119--82461154	12	3.0	12	95	0	63	41	2	25	30	1.69
82462972--82463026	29	2.0	27	82	13	67	52	9	3	34	1.50
82463099--82463129	2	15.5	2	93	0	53	48	0	3	48	1.17
82463682--82463736	20	2.8	20	71	0	65	3	0	36	60	1.15
82464623--82464788	52	3.3	50	83	11	205	61	2	13	22	1.44
82464692--82464782	27	3.4	27	65	17	73	58	2	14	25	1.48
82464660--82464788	52	2.5	51	92	3	215	59	3	13	23	1.49
82464670--82464749	25	3.1	25	68	18	74	66	2	11	20	1.35
82464668--82464758	24	3.6	24	69	17	76	62	2	13	21	1.41
82466331--82466385	15	3.4	16	80	7	58	29	0	10	60	1.31
82466347--82466380	13	2.5	13	90	4	50	29	0	14	55	1.40
82466526--82466581	3	18.7	3	100	0	112	32	0	0	67	0.91
82474489--82474720	49	4.7	49	81	3	266	29	26	18	24	1.98
82474489--82474720	100	2.3	98	82	2	284	29	26	18	24	1.98
82479032--82479093	31	2.0	32	84	9	83	35	3	3	58	1.31
82482853--82482888	16	2.3	16	90	4	56	88	2	8	0	0.59
82482884--82482920	17	2.3	17	90	9	60	59	32	0	8	1.27
82487992--82488016	13	1.9	13	100	0	50	28	24	0	48	1.52
82488011--82488135	26	4.8	26	94	0	223	36	24	4	34	1.77
82488950--82489166	72	3.0	72	91	2	346	18	20	38	22	1.93
82490028--82490082	25	2.3	23	78	12	58	43	3	16	36	1.65
82490223--82490295	2	37.5	2	76	15	64	53	1	4	41	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82490222--82490270	25	2.0	25	84	8	64	53	0	4	42	1.20
82490228--82490305	25	3.0	25	78	12	77	51	2	6	39	1.41
82490325--82490370	25	1.9	25	86	8	69	60	0	4	34	1.16
82490647--82490685	16	2.4	16	86	0	51	43	28	5	23	1.75
82490843--82490941	30	3.3	30	97	0	189	16	6	51	26	1.67
82491567--82492157	89	6.7	88	79	9	491	36	18	16	27	1.93
82491965--82491994	13	2.3	13	94	0	51	63	6	10	20	1.47
82492064--82492674	75	8.3	74	87	5	837	33	19	16	30	1.94
82492064--82492845	148	5.1	148	85	7	898	34	19	16	29	1.94
82492585--82492827	84	2.8	88	85	6	334	34	20	16	28	1.94
82492829--82492873	13	3.4	13	84	6	63	68	4	11	15	1.34
82492764--82492961	100	2.0	101	88	2	299	39	18	17	24	1.91
82492842--82493016	88	2.0	87	86	4	226	37	20	18	24	1.94
82504976--82505135	39	4.1	39	92	0	275	20	23	30	25	1.98
82509706--82509751	23	2.0	22	87	4	65	41	2	15	41	1.59
82509705--82509759	25	2.3	23	78	12	58	43	1	16	38	1.58
82509848--82509889	22	1.9	22	90	0	66	61	9	2	26	1.39
82509901--82509977	2	39.5	2	75	14	63	54	1	3	40	1.27
82509919--82510052	25	5.6	25	70	15	77	55	2	5	35	1.37
82509917--82510000	27	3.2	26	75	12	82	54	2	5	36	1.38
82510336--82510374	16	2.4	16	86	0	51	43	28	5	23	1.75
82510532--82510631	30	3.3	30	94	0	182	18	6	50	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82511078--82511170	48	2.0	45	85	6	123	39	18	23	18	1.92
82515414--82515455	21	2.0	21	81	9	50	7	11	54	26	1.62
82515975--82516438	44	10.5	43	73	6	320	27	23	19	29	1.98
82515975--82516405	89	4.9	87	72	8	273	28	22	19	29	1.98
82515975--82516438	133	3.5	133	88	0	687	27	23	19	29	1.98
82525241--82525382	40	3.5	40	83	1	124	27	23	26	22	1.99
82525280--82525408	40	3.2	39	84	6	152	24	22	27	25	2.00
82533248--82533414	40	4.2	40	80	5	169	25	22	26	24	2.00
82542503--82542545	17	2.5	17	96	3	77	58	4	6	30	1.45
82545104--82545295	48	4.0	48	84	1	233	21	18	27	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325