genome.fa.s4.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  184  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56566130--56566280	40	3.8	40	79	6	155	25	22	27	23	2.00
56575084--56575260	40	4.5	40	83	4	180	23	25	22	28	1.99
56579283--56579489	40	5.2	40	82	2	211	25	26	23	25	2.00
56590445--56590477	12	2.8	12	95	0	57	15	36	0	48	1.45
56593618--56593872	55	4.8	53	78	8	243	37	16	25	21	1.93
56593625--56593825	108	1.8	110	88	4	309	34	16	25	22	1.95
56593941--56593985	23	1.9	24	90	4	74	42	11	24	22	1.86
56594064--56594094	16	1.9	16	93	0	53	41	0	22	35	1.54
56595521--56595549	11	2.6	11	100	0	58	20	0	6	72	1.07
56595602--56595634	15	2.2	15	94	0	57	48	9	12	30	1.71
56598453--56598498	20	2.3	20	96	3	85	36	26	10	26	1.89
56598574--56598647	36	2.1	36	97	0	139	33	20	13	32	1.91
56615744--56615919	46	3.8	46	79	12	216	20	21	29	28	1.98
56615741--56615912	93	1.8	93	96	0	317	20	21	29	27	1.98
56617713--56617745	7	4.7	7	92	0	57	42	42	12	3	1.57
56628820--56628846	11	2.5	11	100	0	54	48	7	0	44	1.31
56629351--56629444	47	2.0	48	85	6	129	26	5	7	60	1.45
56632791--56632860	27	2.6	27	88	2	104	30	27	12	30	1.93
56635199--56635246	10	4.8	10	100	0	96	20	8	8	62	1.49
56635940--56636126	71	2.7	68	92	5	272	18	27	18	35	1.94
56635963--56636126	71	2.3	71	98	0	319	18	27	17	35	1.94
56635963--56636160	71	2.8	69	89	5	240	20	27	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56638660--56639713	358	3.0	355	86	4	1439	27	19	17	35	1.94
56645121--56645214	39	2.4	39	92	1	136	22	30	23	23	1.99
56648360--56648467	44	2.4	44	87	3	144	29	23	13	33	1.93
56652535--56652597	31	2.1	30	93	3	108	39	15	22	22	1.92
56658544--56658591	25	1.9	25	86	0	69	33	25	16	25	1.96
56658635--56658693	20	3.0	20	97	0	109	37	10	20	32	1.86
56658639--56658693	11	5.4	11	70	16	55	38	10	20	30	1.87
56658744--56658886	24	6.0	24	91	4	209	28	22	22	26	1.99
56658744--56658886	47	3.0	47	90	5	207	28	22	22	26	1.99
56658744--56658887	71	2.0	72	89	4	220	29	22	22	26	1.99
56659077--56659140	31	2.1	31	96	0	119	39	15	21	23	1.92
56662999--56663166	40	4.2	40	82	3	178	24	27	22	25	2.00
56667192--56667373	40	4.6	40	83	4	181	23	26	22	28	1.99
56675207--56675383	40	4.5	40	83	4	180	23	25	22	28	1.99
56678863--56678888	13	2.0	13	100	0	52	30	0	7	61	1.24
56680273--56680438	40	4.2	40	94	2	282	22	22	27	27	1.99
56685472--56685505	16	2.2	15	89	5	50	55	26	14	2	1.53
56685751--56685814	26	2.4	27	82	10	87	37	25	9	28	1.87
56685918--56686030	27	4.2	28	83	5	126	21	23	20	34	1.97
56685915--56686030	55	2.1	54	83	7	146	20	23	20	35	1.96
56690985--56691049	22	2.8	23	79	13	71	29	20	21	29	1.98
56691006--56691049	22	2.0	22	91	8	72	29	20	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56690985--56691094	23	4.7	23	67	10	71	31	20	20	27	1.97
56698549--56698602	27	2.0	27	88	0	81	37	12	16	33	1.87
56700418--56700490	34	2.1	34	85	5	94	28	21	21	27	1.99
56702832--56702987	85	1.8	85	94	0	276	25	28	19	26	1.99
56707553--56707726	29	6.1	29	83	2	183	25	13	32	28	1.94
56711990--56712213	112	2.0	112	95	0	403	24	21	31	22	1.98
56714870--56714930	29	2.1	28	84	3	77	31	13	26	29	1.93
56716636--56716728	24	3.9	24	83	8	102	32	16	23	27	1.96
56716662--56716748	24	3.8	22	76	13	77	32	17	24	26	1.97
56720517--56720692	46	3.8	46	75	12	180	29	30	19	20	1.97
56720524--56720695	93	1.8	93	91	0	281	28	30	20	20	1.98
56728768--56728824	30	1.9	30	96	0	105	40	15	5	38	1.70
56728957--56728998	22	1.9	22	85	0	57	28	2	33	35	1.70
56739342--56739375	17	2.0	17	100	0	68	17	5	29	47	1.71
56744359--56744485	40	3.2	40	82	7	127	25	24	26	23	2.00
56744304--56744455	78	1.9	79	82	5	191	25	23	26	25	2.00
56746671--56746878	40	5.2	39	79	5	193	25	25	23	26	2.00
56753759--56753903	40	3.7	40	84	0	175	24	27	22	26	1.99
56753790--56753939	40	3.8	40	83	6	164	23	25	22	28	1.99
56758292--56758340	17	2.8	18	74	22	50	24	18	22	34	1.96
56759161--56759326	40	4.2	40	78	8	162	25	22	27	24	2.00
56759161--56759310	79	1.9	79	84	5	205	26	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56766296--56766344	17	2.8	18	74	22	50	24	18	22	34	1.96
56767166--56767332	40	4.2	40	78	6	160	25	22	27	24	2.00
56769135--56769309	6	28.8	6	73	17	139	48	13	17	20	1.80
56769135--56769281	24	5.8	24	79	13	170	48	13	17	20	1.80
56769161--56769233	31	2.4	31	88	6	105	49	13	16	20	1.79
56769135--56769309	79	2.2	79	95	0	314	48	13	17	20	1.80
56769427--56769492	27	2.5	26	85	7	87	37	22	22	16	1.93
56769427--56769500	27	2.8	27	78	13	82	36	21	24	17	1.95
56769451--56769508	27	2.1	27	84	6	73	36	27	20	15	1.93
56769665--56769723	22	2.7	22	81	0	64	32	22	25	20	1.98
56769817--56769893	27	2.9	26	88	3	100	35	22	22	20	1.96
56770092--56770287	27	7.3	27	84	0	230	25	19	19	35	1.95
56770092--56770287	54	3.6	54	86	0	257	25	19	19	35	1.95
56770292--56770782	27	18.2	27	84	4	614	40	9	22	27	1.85
56777453--56777480	14	2.0	14	100	0	56	28	0	21	50	1.49
56778560--56778716	43	3.7	43	76	10	151	25	17	26	30	1.97
56781870--56781941	22	3.2	22	63	18	58	36	6	29	27	1.83
56781858--56781954	45	2.2	45	98	0	185	37	6	27	28	1.81
56790019--56790067	24	2.0	24	84	7	64	63	2	12	22	1.39
56792017--56792047	2	15.5	2	93	0	53	48	0	3	48	1.17
56792871--56792917	5	8.8	5	84	11	58	2	19	0	78	0.85
56792871--56792912	22	1.9	22	95	0	75	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56792870--56792918	22	2.2	22	85	0	71	2	18	0	79	0.83
56796691--56796803	29	4.0	29	89	2	167	29	30	14	25	1.95
56796691--56796803	57	2.0	57	87	3	165	29	30	14	25	1.95
56797020--56797065	8	5.8	8	84	0	65	6	23	23	45	1.76
56797020--56797065	16	2.9	16	93	0	83	6	23	23	45	1.76
56808867--56808940	29	2.6	29	95	0	139	27	31	14	27	1.95
56808808--56808940	58	2.3	58	80	2	133	24	33	17	24	1.96
56816740--56816813	29	2.6	29	95	0	139	27	31	14	27	1.95
56816681--56816813	58	2.3	58	80	2	133	24	33	17	24	1.96
56818380--56818449	27	2.5	28	88	2	106	31	25	14	28	1.95
56825523--56825672	67	2.2	67	81	8	171	32	17	28	21	1.96
56825547--56825730	67	2.8	64	77	8	194	29	17	29	22	1.97
56837467--56837556	46	2.0	46	93	0	153	41	13	15	30	1.85
56845104--56845173	28	2.5	28	90	4	106	32	27	12	27	1.93
56845720--56845752	16	2.1	16	94	0	57	48	6	0	45	1.27
56855743--56855811	28	2.5	28	90	4	104	33	26	13	27	1.93
56856366--56856401	2	18.0	2	94	0	63	50	2	0	47	1.15
56861542--56861648	39	2.8	39	89	1	162	43	11	9	35	1.73
56879519--56879704	40	4.7	40	85	5	157	25	21	26	25	1.99
56881282--56881391	40	2.8	40	84	0	139	24	26	22	26	2.00
56884346--56884393	25	1.9	25	100	0	96	22	18	12	45	1.83
56885953--56886077	41	3.0	43	75	9	123	24	16	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56895673--56895768	44	2.2	43	79	1	111	27	15	26	31	1.96
56901421--56901470	22	2.3	22	82	0	64	30	20	32	18	1.96
56906507--56906654	65	2.2	65	82	5	172	32	17	29	20	1.96
56906463--56906712	68	3.8	64	78	6	211	30	17	29	23	1.97
56907784--56907808	2	12.5	2	100	0	50	48	0	0	52	1.00
56912186--56912210	2	12.5	2	100	0	50	48	0	0	52	1.00
56913733--56913779	22	2.1	22	96	0	85	27	23	25	23	2.00
56914509--56914560	21	2.5	21	87	0	77	25	28	32	13	1.93
56916459--56916611	39	3.9	39	92	0	252	23	20	32	23	1.98
56916460--56916641	39	4.6	39	89	0	247	23	21	31	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325