genome.fa.s4.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  126  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38014411--38014550	71	2.0	71	94	0	244	42	5	23	28	1.75
38028522--38028548	12	2.2	12	100	0	54	14	29	0	55	1.40
38030476--38030631	55	2.9	52	84	9	199	22	23	16	37	1.93
38030431--38030889	54	8.9	52	70	17	187	22	22	17	37	1.94
38030745--38030883	55	2.6	54	89	3	199	23	23	16	36	1.94
38030868--38030989	47	2.6	47	93	0	199	24	24	13	36	1.92
38030495--38030976	250	1.9	248	90	2	768	23	23	17	36	1.95
38031129--38031212	44	1.9	44	82	4	107	27	21	9	41	1.84
38031285--38031311	12	2.2	12	100	0	54	66	7	0	25	1.17
38039669--38039845	59	3.0	59	78	7	200	58	8	14	18	1.61
38039662--38039848	28	6.6	28	72	11	148	58	8	13	18	1.60
38041913--38042047	67	2.0	67	100	0	270	35	8	13	42	1.75
38043475--38043556	40	2.0	40	100	0	164	24	9	14	51	1.72
38043720--38043759	14	2.9	14	78	14	55	35	2	0	62	1.09
38050677--38050724	25	1.9	25	86	0	69	33	25	16	25	1.96
38050767--38050827	20	3.0	20	92	0	104	34	11	21	32	1.89
38050877--38051019	24	6.0	24	91	4	209	28	22	22	26	1.99
38050877--38051019	47	3.0	47	90	5	207	28	22	22	26	1.99
38050877--38051020	71	2.0	72	89	4	220	29	22	22	26	1.99
38051211--38051273	31	2.1	31	90	3	101	36	15	23	23	1.94
38058864--38058917	11	5.4	11	70	20	55	37	11	20	31	1.88
38058859--38058917	19	3.0	20	95	5	111	35	10	20	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38058967--38059085	24	5.0	24	88	5	170	28	21	22	26	1.99
38058967--38059085	47	2.5	48	89	5	170	28	21	22	26	1.99
38059274--38059334	31	2.1	29	90	9	97	39	16	22	21	1.92
38059291--38059357	34	1.9	35	88	8	102	40	14	23	20	1.90
38066839--38066886	25	1.9	25	86	0	69	33	25	16	25	1.96
38066929--38066989	20	3.0	20	92	0	104	34	11	21	32	1.89
38067039--38067157	24	5.0	24	88	5	170	28	21	22	26	1.99
38067039--38067157	47	2.5	48	89	5	170	28	21	22	26	1.99
38067349--38067412	31	2.1	31	90	0	101	35	15	25	23	1.94
38078013--38078064	18	2.9	18	88	2	70	30	1	0	67	1.02
38078026--38078078	26	2.0	26	89	7	81	37	0	0	62	0.96
38078015--38078065	9	5.8	9	75	13	52	31	1	0	66	1.03
38078033--38078072	17	2.3	18	95	4	73	37	0	0	62	0.95
38078032--38078087	27	2.1	27	83	6	69	44	0	0	55	0.99
38078637--38078683	23	2.0	23	100	0	94	25	21	8	44	1.80
38083939--38083973	17	2.0	18	88	5	54	40	0	0	60	0.97
38084646--38084693	19	2.5	19	96	0	87	54	4	12	29	1.56
38085458--38085519	27	2.3	26	78	8	70	51	11	0	37	1.38
38090837--38090898	27	2.3	26	81	8	79	51	9	0	38	1.35
38092946--38093042	26	3.7	27	65	13	76	57	8	12	21	1.61
38092905--38093035	52	2.5	52	89	0	199	57	8	12	21	1.62
38102777--38102818	18	2.4	18	80	4	50	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38102765--38102816	26	2.0	26	88	3	77	65	1	0	32	1.04
38102765--38102833	28	2.5	28	81	11	72	62	1	0	36	1.04
38115144--38115198	27	2.0	29	85	7	78	54	0	0	45	0.99
38115386--38115422	2	18.5	2	100	0	74	51	0	0	48	1.00
38115512--38115565	28	1.9	28	92	0	90	55	9	0	35	1.32
38117377--38117431	28	2.0	28	86	13	80	47	5	3	43	1.44
38122714--38122759	23	2.0	23	95	0	83	36	4	13	45	1.63
38122792--38122881	42	2.1	42	87	4	128	22	7	12	57	1.60
38123839--38123888	15	3.4	15	73	15	59	64	2	20	14	1.39
38123832--38123891	29	2.1	29	96	0	111	61	6	20	11	1.52
38124045--38124073	2	14.5	2	100	0	58	48	0	0	51	1.00
38124076--38124113	16	2.3	17	86	4	51	18	18	0	63	1.32
38124332--38124373	17	2.4	17	88	11	59	35	2	0	61	1.09
38124457--38124505	2	24.5	2	100	0	98	48	0	0	51	1.00
38129976--38130051	35	2.1	35	95	2	134	44	7	17	30	1.77
38134609--38134649	20	2.0	20	85	0	55	29	7	26	36	1.83
38135485--38135533	2	25.0	2	87	4	73	51	44	0	4	1.20
38144788--38144932	43	3.5	40	74	16	116	26	24	20	28	1.99
38147020--38147053	13	2.6	13	100	0	68	29	38	32	0	1.58
38147988--38148355	46	7.8	48	74	11	244	24	29	19	27	1.98
38147978--38148342	48	7.7	47	74	10	230	23	29	20	27	1.98
38148131--38148345	94	2.3	94	83	1	261	23	27	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38156567--38156804	119	2.0	119	84	3	309	35	12	31	21	1.90
38160645--38160730	29	2.8	32	75	10	106	40	25	9	24	1.85
38165774--38165880	43	2.5	43	77	4	119	28	16	26	28	1.97
38169223--38169252	15	2.1	15	93	6	53	33	0	6	60	1.23
38170232--38170628	41	9.7	41	82	1	438	21	28	15	34	1.94
38170434--38170544	21	5.4	21	64	8	66	25	30	14	29	1.95
38170499--38170603	20	5.2	20	64	4	57	19	28	16	36	1.93
38175032--38175184	42	3.6	42	79	1	155	26	26	16	30	1.97
38175032--38175192	84	1.9	84	82	2	198	27	26	15	31	1.96
38178994--38179143	67	2.2	67	81	8	171	32	17	28	21	1.96
38179018--38179201	67	2.8	64	77	8	194	29	17	29	22	1.97
38180284--38180314	2	15.5	2	100	0	62	48	0	0	51	1.00
38183961--38184127	40	4.2	40	79	2	158	23	27	22	26	2.00
38189657--38189822	40	4.2	40	79	3	158	23	27	22	26	2.00
38189673--38189782	39	2.8	39	84	5	132	24	29	23	22	1.99
38195572--38195714	55	2.6	55	77	2	135	27	29	25	16	1.97
38198255--38198329	36	2.1	36	100	0	150	29	18	8	44	1.78
38200213--38200247	17	2.0	18	94	5	63	5	34	42	17	1.73
38200431--38200492	27	2.3	27	85	2	79	27	17	14	40	1.89
38201155--38201179	13	1.9	13	100	0	50	12	8	16	64	1.49
38201169--38201203	16	2.1	17	89	5	54	17	11	14	57	1.66
38207819--38208080	48	5.5	49	73	11	174	24	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38207820--38208090	140	1.9	144	82	7	351	25	28	19	25	1.99
38209309--38209363	22	2.5	22	90	0	92	12	36	32	18	1.88
38214568--38214758	58	3.2	59	93	2	312	36	14	24	25	1.93
38214598--38214758	88	1.8	87	97	1	304	37	14	24	24	1.92
38214598--38214758	29	5.5	29	97	1	304	37	14	24	24	1.92
38216172--38216393	48	4.6	48	77	6	182	26	27	16	29	1.97
38220689--38220786	42	2.3	42	89	3	153	31	23	14	30	1.94
38222537--38222668	42	3.1	42	80	6	151	29	23	16	30	1.96
38223856--38224075	119	1.8	119	99	0	431	30	27	17	24	1.97
38225344--38225528	79	2.3	81	83	7	227	23	27	24	24	2.00
38225337--38225528	40	4.8	39	76	8	163	23	28	23	24	2.00
38233493--38233683	39	4.8	39	79	5	179	23	28	23	24	2.00
38233500--38233683	79	2.3	81	84	6	234	23	27	23	24	2.00
38243857--38244025	40	4.2	40	80	4	173	23	26	21	28	1.99
38251850--38252018	40	4.2	40	80	4	173	23	26	21	28	1.99
38257523--38257578	28	2.0	29	85	3	78	12	19	44	23	1.84
38257523--38257578	29	2.0	28	86	10	78	12	19	44	23	1.84
38260961--38260993	13	2.6	13	90	4	50	48	12	0	39	1.40
38264951--38264981	14	2.2	14	94	0	53	48	3	0	48	1.17
38268354--38268521	40	4.2	40	80	7	162	23	26	23	26	2.00
38268370--38268521	80	1.9	80	83	5	200	23	26	23	26	2.00
38270490--38270571	6	13.7	6	73	10	69	76	2	4	15	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38270475--38270571	32	2.9	34	79	14	103	75	2	6	16	1.10
38270517--38270564	9	5.2	9	82	12	55	77	2	2	18	0.97
38270509--38270570	16	3.9	16	78	14	65	77	1	3	17	0.98
38270509--38270573	27	2.4	25	87	12	94	76	1	3	18	0.99
38272494--38272534	21	2.0	21	85	0	55	14	26	26	31	1.95
38288896--38288943	25	1.9	25	91	0	78	35	25	14	25	1.94
38288991--38289046	11	5.5	11	71	16	57	35	12	19	32	1.89
38288980--38289046	20	3.3	20	93	0	116	34	11	20	32	1.90
38289096--38289268	24	7.2	24	92	0	283	30	21	20	27	1.98
38290363--38290483	49	2.6	46	80	6	127	28	22	14	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325