genome.fa.s4.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  144  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43927728--43927783	29	1.9	29	88	0	85	30	23	8	37	1.85
43931397--43931618	40	5.6	40	91	1	331	23	21	26	29	1.99
43939791--43939972	40	4.6	40	90	2	251	23	21	25	29	1.99
43947175--43947234	30	2.0	30	90	0	93	30	25	8	36	1.85
43948430--43948981	50	11.0	50	80	6	596	26	18	25	29	1.98
43948435--43948981	101	5.5	99	78	6	537	27	19	24	29	1.98
43948390--43948975	151	3.9	150	89	2	872	26	18	24	30	1.98
43953227--43953287	27	2.3	27	82	0	68	37	18	22	21	1.94
43953284--43953321	2	19.0	2	100	0	76	50	0	0	50	1.00
43953354--43953405	27	2.0	26	84	3	68	34	21	26	17	1.95
43953645--43953913	27	10.0	27	86	3	319	42	7	21	28	1.80
43953645--43953913	80	3.4	79	87	0	349	42	7	21	28	1.80
43953651--43953913	107	2.4	107	86	4	359	41	7	21	28	1.81
43957077--43957120	22	2.0	22	86	0	61	43	0	2	54	1.12
43959367--43959591	124	1.8	124	86	1	326	31	10	24	34	1.89
43959586--43959715	40	3.2	40	85	2	181	21	26	29	23	1.99
43974919--43974991	36	2.0	36	100	0	146	24	10	8	56	1.61
43979801--43979986	40	4.7	40	85	5	207	27	25	21	24	1.99
43980582--43980671	38	2.4	38	98	0	171	34	27	12	25	1.92
43987930--43988097	40	4.2	40	79	1	158	22	27	23	26	2.00
43987946--43988095	80	1.9	80	84	5	205	21	27	24	26	1.99
43993024--43993175	57	2.6	58	76	17	156	34	21	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43998110--43998137	14	2.0	14	100	0	56	14	0	35	50	1.43
44006050--44006088	19	2.1	19	85	0	51	71	7	5	15	1.26
44006549--44006638	27	3.2	27	85	7	119	32	23	24	20	1.98
44006744--44006807	28	2.3	28	91	0	101	32	7	28	31	1.85
44013892--44013930	19	2.1	19	85	0	51	71	7	5	15	1.26
44014341--44014430	27	3.2	27	85	7	119	32	23	24	20	1.98
44014535--44014598	28	2.3	28	91	0	101	32	7	28	31	1.85
44027711--44027803	25	3.7	25	82	1	96	25	18	24	31	1.98
44030354--44030471	19	6.2	18	80	5	110	16	16	26	39	1.90
44030364--44030471	57	1.9	57	86	3	155	16	16	27	38	1.90
44030354--44030471	38	3.1	38	82	2	130	16	16	26	39	1.90
44030603--44030652	25	2.0	25	96	0	91	34	6	16	44	1.72
44032963--44033005	21	2.0	21	86	0	59	25	6	30	37	1.82
44036921--44037095	40	4.4	39	77	8	174	30	25	12	32	1.92
44036921--44037095	80	2.2	80	93	2	307	30	25	12	32	1.92
44042027--44042130	29	3.6	28	86	2	136	26	25	16	31	1.96
44042565--44042598	2	17.0	2	93	0	59	47	0	0	52	1.00
44050124--44050227	29	3.6	28	86	2	136	26	25	16	31	1.96
44050662--44050697	2	18.0	2	94	0	63	47	0	0	52	1.00
44057906--44058088	40	4.6	40	87	6	248	24	23	26	25	2.00
44066967--44067103	56	2.4	56	90	3	222	27	12	24	36	1.91
44066969--44067134	56	2.9	57	87	3	185	25	12	25	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44070223--44070408	40	4.7	40	84	5	200	26	25	21	26	1.99
44072408--44072522	27	4.3	26	84	5	95	35	23	20	20	1.96
44072432--44072521	28	3.3	28	85	4	121	35	23	20	21	1.96
44081985--44082198	40	5.3	40	82	2	225	25	20	27	27	1.99
44081995--44082198	80	2.5	80	84	1	248	25	20	27	26	1.99
44091133--44091300	40	4.2	40	82	1	176	25	26	22	26	2.00
44094514--44094546	15	2.2	16	89	10	52	54	15	0	30	1.41
44099834--44099868	2	17.5	2	93	0	61	48	0	2	48	1.16
44101521--44101606	43	2.0	43	82	13	106	29	29	17	24	1.97
44108706--44108824	29	4.1	29	81	5	107	31	12	28	27	1.93
44108733--44108829	29	3.3	29	85	0	122	30	13	29	25	1.94
44108759--44108852	29	3.3	29	86	5	113	28	14	34	22	1.94
44111705--44111736	16	2.0	16	93	0	55	50	34	6	9	1.60
44113227--44113258	16	2.0	16	93	0	55	6	21	43	28	1.77
44115560--44115743	40	4.6	39	75	6	138	26	23	27	22	2.00
44115600--44115788	80	2.4	81	77	4	186	23	24	29	22	1.99
44123678--44123861	40	4.6	39	75	6	138	26	23	27	22	2.00
44123718--44123906	80	2.4	81	77	4	186	23	24	29	22	1.99
44143491--44143523	16	2.1	16	94	0	57	51	27	3	18	1.60
44144992--44145068	29	2.7	29	81	0	91	27	16	25	29	1.97
44149506--44149737	49	4.7	49	83	3	302	30	26	18	25	1.98
44164846--44165135	38	6.9	38	70	19	184	30	15	23	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44164872--44165085	48	4.7	48	76	12	227	31	15	21	30	1.95
44164922--44165128	85	2.4	85	92	0	351	30	14	23	30	1.95
44171126--44171325	38	4.7	40	73	19	156	29	14	25	31	1.94
44171157--44171290	48	2.8	48	89	1	198	31	14	22	31	1.94
44174158--44174200	15	2.8	15	89	3	59	62	6	11	18	1.50
44176815--44176890	37	2.1	37	100	0	152	38	10	21	30	1.87
44180188--44180241	21	2.6	22	88	5	69	40	27	0	31	1.57
44181207--44181302	48	2.0	48	93	0	165	28	13	10	47	1.75
44183401--44183487	33	2.6	33	90	0	129	28	21	22	26	1.99
44183626--44183696	27	2.7	26	76	8	72	43	19	21	15	1.87
44183831--44183922	27	3.4	27	86	0	121	27	21	17	33	1.96
44191151--44191241	27	3.4	27	84	1	112	25	21	18	34	1.96
44194396--44194459	31	2.1	31	93	0	110	23	23	15	37	1.93
44194653--44194769	23	5.0	24	88	7	161	29	22	19	28	1.98
44194819--44194885	20	3.3	20	89	0	107	31	22	11	34	1.90
44194922--44194969	25	1.9	25	91	0	78	25	14	25	35	1.94
44198932--44199115	40	4.6	39	75	6	138	26	23	27	22	2.00
44198972--44199160	80	2.4	81	77	4	186	23	24	29	22	1.99
44205645--44205812	40	4.2	40	79	1	158	22	27	23	26	2.00
44205661--44205810	80	1.9	80	84	5	205	21	27	24	26	1.99
44209047--44209110	31	2.1	31	84	0	83	23	21	15	39	1.92
44209323--44209419	23	4.2	24	89	6	139	28	22	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44209469--44209535	20	3.3	20	93	0	116	32	20	11	34	1.90
44209469--44209524	11	5.5	11	71	16	57	32	19	12	35	1.89
44210683--44210719	12	3.0	13	80	11	51	59	0	37	2	1.12
44215537--44215615	26	3.0	26	80	12	81	44	26	10	18	1.82
44218302--44218381	29	2.7	29	86	5	108	27	32	15	25	1.95
44219935--44219959	11	2.3	11	100	0	50	36	24	0	40	1.55
44222795--44222954	49	3.3	49	90	1	243	30	30	8	31	1.86
44231867--44232037	93	1.8	93	88	2	263	29	26	20	23	1.99
44231860--44232035	46	3.8	47	77	15	186	30	27	19	22	1.98
44234812--44234988	40	4.5	40	83	4	180	23	25	22	28	1.99
44242836--44243004	40	4.2	40	80	4	173	23	26	21	28	1.99
44247550--44247865	49	6.5	49	93	1	514	28	29	9	32	1.88
44258619--44258657	19	2.1	19	85	0	51	71	7	5	15	1.26
44260635--44260706	34	2.1	34	89	0	108	27	23	15	33	1.95
44262583--44262631	6	8.2	6	90	0	80	0	67	0	32	0.91
44268024--44268061	14	2.7	14	91	0	58	39	15	5	39	1.70
44270347--44270511	43	3.9	42	77	6	143	33	25	16	24	1.96
44272645--44272688	23	1.9	23	86	9	63	36	6	9	47	1.62
44274138--44274285	48	3.1	48	90	0	224	37	8	24	29	1.84
44276217--44276333	40	3.0	40	91	1	182	20	23	29	27	1.99
44277252--44277295	23	1.9	23	85	0	61	36	6	11	45	1.67
44280765--44280840	31	2.5	31	97	0	143	25	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44280864--44280955	42	2.2	42	90	0	139	34	20	14	30	1.92
44281088--44281223	26	5.3	26	86	3	181	29	22	20	27	1.98
44281273--44281359	20	4.3	20	92	2	140	31	18	10	40	1.84
44282163--44282529	27	13.6	27	73	9	126	33	10	20	35	1.86
44282151--44282276	54	2.3	54	84	2	155	31	9	18	40	1.82
44282316--44282419	54	1.9	54	84	5	140	42	11	19	26	1.85
44282399--44282529	55	2.4	54	79	3	145	32	9	19	38	1.84
44282328--44282622	27	10.9	27	78	5	155	36	9	21	32	1.85
44287492--44287538	24	2.0	24	100	0	94	40	12	21	25	1.89
44290397--44290476	29	2.7	29	82	5	99	27	31	15	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325