genome.fa.s4.2.7.7.80.10.50.1000.318.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  318  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96286444--96286505	29	2.2	29	82	8	74	62	4	30	1	1.25
96287954--96288088	39	3.4	39	76	8	123	23	20	27	28	1.99
96294138--96294173	5	7.0	5	93	6	63	38	0	0	61	0.96
96294203--96294263	30	2.0	30	84	6	79	60	4	32	1	1.28
96295726--96295860	39	3.4	39	76	8	123	23	20	27	28	1.99
96297791--96297832	22	1.9	22	85	9	59	23	52	9	14	1.71
96297909--96297955	23	2.2	21	85	14	62	10	2	31	55	1.46
96297909--96297987	24	3.3	24	77	7	72	8	1	29	60	1.34
96298313--96298394	3	27.0	3	72	20	57	30	3	1	64	1.18
96298314--96298379	27	2.3	29	82	14	77	28	4	1	65	1.21
96298313--96298394	18	4.3	18	79	13	85	30	3	1	64	1.18
96298316--96298390	12	6.0	12	72	20	64	29	4	1	65	1.19
96304032--96304069	6	6.3	6	96	0	67	44	15	36	2	1.61
96305266--96305392	66	1.9	66	96	0	236	33	19	11	35	1.88
96305456--96306397	43	21.6	44	74	10	618	35	21	22	20	1.96
96305444--96306310	131	6.6	131	84	7	1140	35	22	21	19	1.96
96305629--96306362	87	8.4	87	72	11	348	35	21	21	20	1.96
96306415--96306613	68	2.9	68	90	2	303	28	23	21	26	1.99
96306725--96307409	44	15.6	44	76	8	590	31	19	23	25	1.98
96306666--96307059	132	3.0	132	96	0	725	32	20	22	25	1.98
96306857--96307409	176	3.1	176	97	0	1025	30	19	23	26	1.98
96306678--96307225	132	4.2	132	89	3	685	31	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96306666--96307445	44	17.7	43	75	9	547	31	19	23	25	1.98
96307808--96307849	22	1.9	22	85	9	59	23	52	9	14	1.71
96307924--96307992	21	3.2	21	85	8	77	8	1	30	59	1.36
96307954--96307997	21	2.1	21	95	4	81	6	0	29	63	1.20
96307915--96308022	23	4.7	23	75	15	98	11	1	29	57	1.44
96308325--96308406	3	27.0	3	72	20	57	30	3	1	64	1.18
96308326--96308391	27	2.3	29	82	14	77	28	4	1	65	1.21
96308325--96308406	18	4.3	18	79	13	85	30	3	1	64	1.18
96308328--96308402	12	6.0	12	72	20	64	29	4	1	65	1.19
96309872--96309943	27	2.7	27	78	4	74	20	20	20	37	1.95
96317130--96317185	16	3.2	17	87	9	78	21	1	1	75	0.99
96317629--96317671	18	2.4	18	88	0	68	51	0	2	46	1.13
96318938--96319036	17	5.6	17	88	7	144	38	12	13	36	1.81
96318930--96319036	35	3.0	35	95	4	187	38	11	14	36	1.81
96318938--96319036	18	5.6	18	90	4	157	38	12	13	36	1.81
96319511--96319576	17	3.9	17	71	23	59	34	1	0	63	1.04
96319553--96319601	26	1.9	25	83	4	62	36	4	0	59	1.17
96324939--96325198	86	3.1	85	89	6	404	28	21	17	33	1.96
96326896--96326961	21	3.0	22	74	14	64	45	4	1	48	1.32
96331436--96331511	22	3.3	22	68	22	66	31	9	31	27	1.88
96331401--96331603	47	4.3	47	86	3	277	33	8	30	27	1.87
96331674--96331758	40	2.2	40	86	2	118	17	21	30	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96334721--96334763	21	2.1	21	86	4	61	30	11	9	48	1.71
96348573--96348621	23	2.1	23	100	0	98	55	8	16	20	1.66
96358409--96358439	2	15.5	2	100	0	62	51	0	0	48	1.00
96361348--96361385	2	19.0	2	94	0	67	47	0	0	52	1.00
96371278--96371723	129	3.4	129	86	4	576	34	18	16	30	1.93
96371278--96371723	131	3.4	128	85	4	556	34	18	16	30	1.93
96379823--96379852	2	15.0	2	100	0	60	0	50	0	50	1.00
96379852--96379878	2	13.5	2	100	0	54	48	0	0	51	1.00
96380300--96380387	45	2.0	45	84	4	115	30	21	6	40	1.79
96381016--96381149	66	2.0	66	84	5	173	12	21	18	47	1.82
96383132--96383208	41	1.9	41	89	2	120	22	22	20	35	1.96
96388400--96388469	19	3.8	19	90	7	117	38	12	14	34	1.84
96388757--96388791	18	2.0	17	88	5	52	31	0	0	68	0.90
96398724--96398957	78	3.0	78	94	0	414	32	18	24	24	1.97
96398897--96399170	45	6.1	45	79	6	295	29	16	28	24	1.97
96398971--96399170	89	2.2	90	86	3	287	31	16	29	23	1.96
96398897--96399153	134	1.9	136	83	5	333	28	17	28	25	1.97
96399514--96399593	36	2.2	35	85	10	108	40	11	12	36	1.79
96399543--96399580	17	2.5	15	80	19	51	39	10	15	34	1.82
96399522--96399592	19	3.8	19	90	7	119	39	9	14	36	1.79
96399883--96399917	17	2.1	17	89	10	54	34	0	0	65	0.93
96403272--96403302	15	2.1	15	100	0	62	38	12	0	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96409729--96409772	20	2.1	22	84	12	58	34	4	4	56	1.40
96423703--96423805	44	2.3	44	78	3	109	41	17	8	32	1.80
96429525--96429565	21	1.9	21	85	14	57	34	2	2	60	1.23
96432740--96432815	22	3.7	21	76	15	68	40	17	6	35	1.75
96432769--96432847	35	2.2	37	86	13	121	35	16	10	37	1.82
96432790--96432845	17	3.5	15	88	9	60	35	16	10	37	1.83
96432776--96432847	19	3.9	19	89	10	123	36	15	11	37	1.83
96433177--96433449	45	6.1	45	78	8	252	25	27	16	30	1.96
96433177--96433375	45	4.5	45	87	1	258	24	28	15	31	1.95
96433177--96433359	89	2.1	89	87	2	260	25	28	14	30	1.95
96433389--96433683	78	3.8	78	87	1	421	25	23	17	32	1.97
96433300--96434193	364	2.4	365	89	2	1328	25	23	18	32	1.97
96433755--96434017	78	3.4	78	90	3	431	24	23	19	32	1.97
96441631--96441659	13	2.1	14	93	6	51	37	13	6	41	1.72
96442652--96442746	18	4.7	21	79	12	74	40	16	7	35	1.77
96442652--96442709	22	2.6	22	81	7	64	41	17	5	36	1.72
96442688--96442761	19	3.9	19	96	3	141	36	16	10	36	1.83
96442681--96442761	37	2.2	38	91	8	141	35	17	9	37	1.83
96442691--96442770	37	2.2	37	88	6	110	38	13	12	35	1.83
96444732--96444762	15	2.0	16	93	6	55	58	0	6	35	1.24
96444884--96444911	8	3.5	8	100	0	56	0	10	0	89	0.49
96445775--96445817	17	2.5	17	88	0	59	4	30	0	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96449087--96449122	18	2.0	18	89	10	56	69	0	0	30	0.89
96449376--96449451	22	3.7	21	76	15	68	40	17	6	35	1.75
96449412--96449519	19	5.9	19	93	6	181	36	14	11	37	1.82
96449415--96449527	17	6.3	19	90	8	132	38	13	11	37	1.81
96449872--96450071	45	4.5	45	84	5	235	24	28	14	34	1.93
96449872--96450071	89	2.2	90	82	7	253	24	28	14	34	1.93
96450085--96450534	78	5.8	77	86	4	607	25	24	18	32	1.97
96450477--96451065	220	2.7	220	92	0	964	27	22	19	31	1.97
96457554--96457588	18	2.0	18	88	5	54	68	0	0	31	0.90
96457842--96457917	22	3.7	21	78	13	77	42	15	5	36	1.70
96457878--96457968	19	4.9	19	88	8	143	37	16	9	36	1.82
96457890--96457960	35	2.0	36	94	2	126	36	15	11	36	1.83
96458587--96458638	21	2.5	21	93	0	86	26	32	13	26	1.94
96468171--96468215	13	3.5	13	78	6	56	62	2	0	35	1.08
96468641--96468691	19	2.8	18	79	5	59	25	5	0	68	1.12
96485394--96485422	4	7.2	4	100	0	58	0	24	0	75	0.80
96485802--96485924	58	2.1	60	82	8	146	47	6	21	24	1.74
96489031--96489094	19	3.4	19	79	14	62	65	3	1	29	1.17
96489051--96489102	27	1.9	27	88	7	79	71	0	0	28	0.87
96489052--96489101	19	2.7	19	84	3	66	70	0	0	30	0.88
96490055--96490140	43	2.0	43	97	0	163	26	13	22	37	1.92
96493706--96493761	22	2.9	18	76	19	58	50	1	0	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96509437--96509500	17	3.7	17	71	19	60	39	0	4	56	1.20
96509445--96509514	35	2.0	35	100	0	140	40	0	2	57	1.14
96510078--96510152	21	3.6	21	94	0	132	22	12	45	20	1.83
96510157--96510295	69	2.0	69	100	0	278	29	17	25	27	1.97
96511461--96511496	6	6.0	6	100	0	72	16	16	33	33	1.92
96514701--96514725	9	2.8	9	100	0	50	56	0	44	0	0.99
96516848--96516917	21	3.3	21	89	0	104	18	44	14	22	1.86
96518095--96518338	3	81.7	3	82	5	280	30	5	1	63	1.24
96518739--96519060	157	2.1	157	100	0	644	37	15	13	34	1.86
96538571--96538598	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325