genome.fa.s4.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  123  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36999419--36999521	37	2.8	37	96	0	188	23	20	32	24	1.98
37000800--37001037	40	6.0	40	91	1	388	20	21	30	26	1.98
37001200--37001250	25	2.0	25	81	7	59	35	13	29	21	1.92
37004343--37004911	48	11.9	48	95	0	967	34	7	28	29	1.84
37005052--37005154	37	2.8	37	93	0	179	23	20	31	25	1.98
37005973--37006230	27	9.6	27	87	0	363	30	6	21	41	1.79
37016847--37017029	75	2.4	75	84	7	210	21	22	25	30	1.99
37016847--37017029	37	4.8	38	82	10	189	21	22	25	30	1.99
37016876--37017038	37	4.3	37	83	7	195	20	20	25	33	1.97
37017153--37017182	2	14.5	2	93	6	51	46	0	3	50	1.18
37018602--37018854	43	5.9	43	93	0	407	10	22	33	32	1.89
37023256--37023414	37	4.2	38	87	6	207	20	21	26	32	1.97
37023256--37023413	75	2.1	77	88	4	232	20	21	26	31	1.98
37035319--37035364	22	2.0	23	87	4	67	39	19	4	36	1.72
37036760--37036814	28	2.0	28	85	0	74	30	27	12	29	1.93
37041339--37041418	34	2.4	34	91	0	124	25	26	26	22	2.00
37042377--37042467	45	2.0	45	97	0	173	27	20	17	34	1.95
37044455--37044688	78	3.0	78	91	2	353	25	19	28	26	1.99
37044456--37044716	40	6.6	39	76	11	248	25	19	28	26	1.99
37044455--37044716	118	2.2	119	79	8	293	25	19	28	26	1.99
37050571--37050763	39	4.9	39	90	0	251	23	31	21	23	1.98
37050601--37050763	39	4.2	39	93	0	263	24	31	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37055269--37055536	46	5.8	45	75	12	258	20	20	29	28	1.98
37055265--37055528	93	2.8	93	94	0	467	20	21	30	27	1.98
37057853--37057880	13	2.2	13	100	0	56	57	0	21	21	1.41
37060556--37060686	29	4.5	29	98	0	244	31	12	28	27	1.93
37060556--37060746	29	6.6	29	89	2	122	28	14	30	26	1.95
37060556--37060715	87	1.8	87	87	2	241	29	13	30	26	1.94
37060556--37060744	87	2.2	87	84	3	238	28	14	30	26	1.95
37064244--37064512	46	5.8	46	73	14	248	22	19	28	29	1.98
37064240--37064505	93	2.9	93	91	0	442	22	19	28	28	1.98
37067451--37067504	28	1.9	28	88	0	81	33	27	11	27	1.91
37069276--37069352	40	1.9	40	86	0	109	35	24	15	24	1.94
37076320--37076398	28	2.8	28	86	0	104	29	22	11	36	1.89
37078772--37078921	24	6.2	24	79	9	162	50	14	16	20	1.78
37078772--37078912	73	1.9	73	94	0	246	49	14	16	19	1.79
37078844--37078946	30	3.4	30	89	1	152	47	15	17	19	1.83
37078772--37078921	6	24.8	6	75	16	132	50	14	16	20	1.78
37079078--37079179	27	3.8	26	85	5	123	36	20	23	19	1.95
37079348--37079401	22	2.5	22	76	11	65	35	22	22	20	1.96
37079827--37080920	27	41.3	27	88	3	1521	25	21	19	33	1.97
37080448--37080487	19	2.1	19	100	0	80	27	25	20	27	1.99
37080655--37080690	18	2.0	18	100	0	72	27	27	16	27	1.97
37080877--37081107	27	8.7	27	75	9	179	27	10	22	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37080904--37081107	80	2.6	79	83	4	241	27	9	23	39	1.85
37081111--37081282	27	6.4	27	89	4	249	38	6	25	29	1.82
37081111--37081282	81	2.1	81	91	3	276	38	6	25	29	1.82
37080905--37081306	27	15.1	26	78	7	199	32	8	24	35	1.85
37081111--37081327	80	2.7	80	84	2	211	37	6	23	31	1.82
37084140--37084281	39	3.6	39	91	3	232	27	28	21	22	1.99
37088837--37088877	21	1.9	22	85	5	57	34	24	2	39	1.69
37097563--37097623	27	2.3	27	85	5	79	44	16	13	26	1.84
37101556--37101770	46	4.7	44	79	11	191	27	19	29	22	1.98
37101599--37101770	92	1.8	93	84	11	237	27	19	30	22	1.98
37104618--37104653	18	2.0	18	100	0	72	44	16	11	27	1.82
37105235--37105270	18	1.9	19	94	5	65	55	2	0	41	1.14
37105785--37105817	17	1.9	17	88	11	50	57	9	0	33	1.30
37107997--37108182	78	2.4	80	83	8	238	25	22	26	25	2.00
37108001--37108182	40	4.6	39	82	9	201	25	23	26	24	2.00
37116148--37116330	39	4.7	40	84	9	234	24	21	27	26	2.00
37119445--37119628	78	2.3	81	86	6	252	24	22	27	26	2.00
37119446--37119628	40	4.6	39	85	8	228	24	22	27	25	2.00
37127595--37127778	78	2.3	81	86	6	252	24	22	27	26	2.00
37127596--37127778	40	4.6	39	85	8	228	24	22	27	25	2.00
37132046--37132106	21	3.0	21	92	2	88	21	27	36	14	1.93
37133642--37133812	93	1.8	93	96	0	315	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37133634--37133809	46	3.8	46	80	12	225	28	28	21	21	1.98
37136180--37136268	30	3.0	30	80	8	101	57	15	16	10	1.65
37136180--37136259	15	5.4	15	80	7	92	58	13	17	10	1.62
37136191--37136268	15	5.2	15	78	9	79	56	15	16	11	1.67
37139212--37139382	93	1.8	93	96	0	315	28	29	21	21	1.98
37139204--37139379	46	3.8	46	80	12	225	28	28	21	21	1.98
37164587--37164651	28	2.3	28	86	0	94	30	27	7	33	1.85
37165283--37165321	19	2.1	19	85	0	51	15	5	7	71	1.26
37167027--37167368	27	12.7	27	86	2	445	27	23	9	39	1.86
37167077--37167412	81	4.2	80	81	4	219	28	23	9	38	1.86
37168696--37168752	9	5.9	9	73	15	51	35	8	21	35	1.84
37168694--37168764	20	3.5	20	94	0	124	35	12	19	32	1.90
37168705--37168763	11	5.7	11	71	15	54	35	13	20	30	1.91
37168811--37169000	24	8.0	24	88	3	260	30	22	21	26	1.99
37168811--37168979	47	3.6	47	91	1	275	30	21	20	26	1.98
37168810--37169000	71	2.7	71	86	5	260	30	21	21	26	1.99
37169194--37169257	31	2.1	31	90	0	101	35	15	23	25	1.94
37176411--37176475	28	2.3	28	91	0	103	32	27	7	32	1.85
37176581--37176643	28	2.2	28	83	8	74	22	22	22	33	1.97
37177104--37177142	19	2.1	19	85	0	51	15	5	7	71	1.26
37182655--37182843	27	7.0	27	81	9	183	37	21	10	31	1.87
37182655--37182843	54	3.5	53	80	9	204	37	21	10	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37182655--37182867	54	4.0	52	78	7	167	37	20	10	31	1.86
37182692--37182867	27	6.6	27	78	8	98	38	19	10	31	1.86
37183212--37183271	22	2.7	22	78	0	66	21	25	21	31	1.98
37188687--37188854	40	4.2	40	78	6	142	25	26	22	26	2.00
37191631--37191718	43	2.0	43	86	0	122	37	11	17	34	1.85
37207771--37207944	50	3.5	49	83	7	199	28	27	17	26	1.98
37207771--37207957	101	1.9	99	85	4	259	28	27	18	25	1.98
37210971--37211035	32	2.0	32	93	0	112	40	12	6	41	1.67
37227457--37227486	14	2.1	15	93	6	53	30	0	20	50	1.49
37228895--37228933	20	1.9	21	89	5	62	48	0	15	35	1.45
37235924--37236014	45	2.0	45	91	0	146	38	23	13	25	1.91
37241909--37242009	28	3.5	28	86	6	114	28	13	27	29	1.95
37241938--37242009	29	2.5	28	91	6	110	29	13	27	29	1.95
37246166--37246291	46	2.7	46	95	0	216	28	29	21	20	1.98
37252482--37252582	28	3.5	28	86	6	114	28	13	27	29	1.95
37252511--37252582	29	2.5	28	91	6	110	29	13	27	29	1.95
37254020--37254098	27	2.9	28	81	3	90	37	24	20	17	1.93
37255517--37255563	24	2.0	24	91	0	76	23	38	2	36	1.67
37260650--37260674	13	1.9	13	100	0	50	28	24	8	40	1.83
37266527--37266561	2	17.5	2	100	0	70	48	0	0	51	1.00
37267847--37267925	41	1.9	41	97	0	149	35	13	0	50	1.42
37268084--37268122	18	2.2	17	90	4	60	71	5	0	23	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37273102--37273231	40	3.3	39	76	8	136	23	27	23	24	2.00
37273118--37273269	40	3.8	40	78	6	148	22	26	23	27	1.99
37273118--37273267	80	1.9	80	83	8	198	22	26	24	27	1.99
37278925--37279009	40	2.1	39	95	4	152	45	7	18	28	1.75
37279640--37279717	41	1.9	41	82	10	97	23	17	28	30	1.97
37283389--37283524	57	2.4	56	82	2	157	33	20	22	23	1.97
37286244--37286393	40	3.8	40	84	5	160	23	25	22	29	1.99
37293502--37293683	40	4.6	38	79	6	154	23	25	22	28	1.99
37293538--37293683	40	3.7	39	86	2	159	22	25	22	29	1.99
37295672--37295712	21	1.9	22	90	5	66	46	2	2	48	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325