Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  150  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45840681--45840705
12
2.1
12
100
0
50
76
0
16
8
1.02
45840675--45840730
18
3.1
18
76
5
51
69
3
19
7
1.27
45840681--45840762
30
2.7
31
81
5
105
64
1
21
12
1.33
45841905--45841952
14
3.4
14
85
0
60
43
6
31
18
1.75
45844677--45844773
30
3.2
31
75
5
101
28
27
14
28
1.95
45852654--45852894
49
4.9
49
83
3
293
29
27
18
24
1.98
45853546--45853606
30
2.0
30
84
6
79
29
24
8
37
1.84
45855214--45855252
6
6.3
6
91
5
60
79
2
0
17
0.84
45855214--45855262
12
3.7
13
83
8
55
79
2
0
18
0.83
45855205--45855267
12
4.8
13
70
24
51
74
1
0
23
0.90
45856341--45856377
19
1.9
19
89
10
58
2
24
2
70
1.14
45856331--45856417
33
2.8
32
75
21
80
4
21
1
72
1.09
45856332--45856417
19
4.5
18
69
17
50
4
22
1
72
1.10
45858465--45858509
14
3.3
14
78
6
56
35
0
15
48
1.45
45859494--45859538
14
3.1
14
81
6
63
44
28
0
26
1.55
45859482--45859538
29
2.0
29
92
0
96
45
26
0
28
1.54
45859487--45859534
15
3.3
15
79
5
62
45
25
0
29
1.53
45863352--45863396
20
2.2
21
88
4
65
15
22
20
42
1.89
45863362--45863411
21
2.5
21
84
12
61
14
20
18
48
1.82
45866843--45866899
27
2.1
27
100
0
114
21
35
19
24
1.96
45869007--45869104
30
3.3
30
69
9
83
27
27
16
28
1.97
45870486--45870532
13
3.6
13
85
5
60
76
4
4
14
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45870486--45870544
13
4.5
13
79
10
57
76
5
5
13
1.13
45870486--45870519
12
2.8
12
100
0
68
76
5
0
17
0.98
45871457--45871513
11
5.5
10
73
22
55
77
1
17
3
1.00
45871446--45871513
21
3.2
20
80
12
66
76
2
17
2
1.04
45871457--45871513
5
11.0
5
77
17
55
77
1
17
3
1.00
45871457--45871513
16
3.7
14
80
17
60
77
1
17
3
1.00
45871582--45871652
30
2.4
31
81
11
85
61
1
22
14
1.40
45875013--45875073
27
2.3
27
80
11
72
68
4
22
3
1.23
45875067--45875121
18
3.1
18
75
0
65
58
0
30
10
1.33
45875081--45875105
12
2.1
12
100
0
50
68
0
24
8
1.16
45879745--45879780
10
3.6
10
84
0
54
25
27
16
30
1.97
45879745--45879821
20
3.8
20
79
3
82
22
24
18
35
1.96
45880448--45880487
14
2.9
14
88
0
53
50
7
32
10
1.64
45882002--45882098
30
3.2
30
76
2
106
27
27
16
27
1.97
45883803--45883832
11
2.8
11
95
5
53
70
6
3
20
1.25
45884775--45884828
9
5.5
10
79
16
60
81
1
16
0
0.78
45884775--45884828
5
11.0
5
82
11
60
81
1
16
0
0.78
45884897--45884982
12
7.2
12
73
2
57
65
1
22
11
1.32
45884891--45884946
18
3.1
18
76
5
51
69
3
19
7
1.27
45884897--45884980
29
2.8
30
80
10
109
64
1
22
11
1.34
45887064--45887148
30
2.8
30
72
0
98
27
27
17
28
1.98
45890700--45890747
20
2.4
20
92
0
87
72
4
4
18
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45891617--45891678
11
6.0
10
75
20
65
77
3
17
1
0.98
45891610--45891678
16
4.6
14
77
15
66
76
4
17
1
1.02
45891617--45891678
5
12.0
5
79
16
65
77
3
17
1
0.98
45891621--45891678
31
1.9
30
86
10
82
77
3
17
1
0.99
45891738--45891781
18
2.4
18
80
0
52
68
2
13
15
1.31
45892792--45892816
11
2.3
11
100
0
50
8
36
0
56
1.29
45893436--45893483
20
2.3
21
85
3
62
20
22
18
37
1.94
45893445--45893487
21
2.1
20
91
4
68
18
16
20
44
1.87
45898434--45898524
37
2.4
37
92
1
146
26
31
17
24
1.97
45898564--45898715
48
3.2
48
88
0
241
30
27
6
34
1.82
45898548--45898866
96
3.3
97
81
9
305
32
28
6
32
1.83
45898707--45898901
51
3.9
51
97
1
358
31
28
8
31
1.86
45904021--45904060
19
2.1
19
85
0
53
25
32
17
25
1.97
45905277--45905311
14
2.5
14
90
0
61
14
37
5
42
1.69
45905860--45905956
30
3.2
30
69
13
83
29
15
27
26
1.96
45908078--45908109
11
2.8
11
95
4
55
18
18
0
62
1.33
45908104--45908168
29
2.2
28
84
10
78
12
23
0
64
1.27
45908236--45908302
5
13.0
5
74
22
59
1
16
4
77
1.00
45910855--45910951
30
3.2
30
74
8
99
30
15
25
27
1.96
45916079--45916124
10
4.7
10
79
15
51
8
4
6
80
1.01
45916079--45916125
20
2.3
20
92
0
76
8
4
6
80
1.00
45918082--45918210
66
1.9
68
82
10
165
34
15
30
20
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45926396--45926440
14
3.3
14
84
6
65
48
13
0
37
1.42
45926423--45926529
43
2.5
43
96
1
198
41
14
13
31
1.83
45933382--45933431
18
2.8
18
87
0
73
58
0
28
14
1.37
45933375--45933456
24
3.4
24
79
0
92
59
0
28
12
1.33
45935908--45935952
14
3.3
14
78
6
56
35
0
15
48
1.45
45936929--45936985
29
2.0
29
92
0
96
45
29
0
24
1.53
45940418--45940589
68
2.5
68
75
15
156
22
27
15
34
1.95
45945824--45945877
23
2.2
25
83
9
67
35
3
18
42
1.68
45947035--45947139
30
3.5
30
72
3
88
28
24
15
31
1.95
45947864--45947892
14
2.1
14
100
0
58
48
6
37
6
1.57
45947866--45947901
14
2.6
14
90
0
54
52
8
27
11
1.65
45955986--45956025
10
4.0
10
86
0
53
15
2
5
77
1.04
45957272--45957319
14
3.4
14
85
0
60
43
6
31
18
1.75
45957906--45957953
15
3.3
15
73
5
53
29
0
27
43
1.55
45957900--45957943
14
3.1
14
74
6
52
27
0
34
38
1.57
45957900--45957959
29
2.1
29
93
0
102
28
0
30
41
1.56
45960604--45960648
14
3.3
14
78
6
56
48
15
0
35
1.45
45961416--45963054
818
2.0
819
96
0
3003
32
19
19
28
1.96
45965712--45965751
14
2.9
14
81
11
55
7
20
0
72
1.08
45965712--45965753
13
3.0
14
82
10
59
9
21
0
69
1.17
45966216--45966263
15
3.3
15
73
5
53
31
0
25
43
1.55
45967238--45967282
14
3.3
14
84
6
65
48
13
0
37
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45970387--45970460
21
3.6
21
67
22
50
6
20
2
70
1.23
45974168--45974203
11
3.0
12
88
12
56
13
0
8
77
0.98
45974162--45974200
13
3.2
12
89
10
62
7
0
7
84
0.77
45975448--45975492
14
3.3
14
84
6
65
48
13
0
37
1.42
45975475--45975580
42
2.5
42
96
1
194
39
15
12
33
1.84
45979271--45979365
30
3.2
30
75
11
99
29
15
26
28
1.96
45980609--45980635
6
4.5
6
100
0
54
51
33
0
14
1.43
45983364--45983460
30
3.2
30
79
2
106
29
15
25
28
1.96
45989191--45991118
955
2.0
957
96
2
3524
34
20
16
28
1.94
45991243--45991330
30
2.9
30
75
0
95
28
17
27
27
1.97
45998820--45998859
19
2.1
19
86
9
55
27
35
15
22
1.94
46000099--46000132
14
2.4
14
90
0
50
23
26
5
44
1.76
46000264--46000315
11
4.6
11
88
4
59
75
7
5
11
1.19
46000264--46000315
23
2.3
22
90
3
77
75
7
5
11
1.19
46006820--46006867
14
3.4
14
85
0
60
18
31
6
43
1.75
46012396--46012541
37
3.9
37
92
0
220
26
33
18
21
1.96
46012691--46012826
50
2.7
50
98
0
263
31
25
6
36
1.82
46012796--46012895
47
2.1
47
86
0
137
28
29
10
33
1.89
46020005--46020047
14
3.1
14
80
6
52
51
11
0
37
1.39
46024813--46024857
14
3.3
14
78
6
56
48
15
0
35
1.45
46029524--46029559
18
2.0
18
100
0
72
38
22
16
22
1.93
46029918--46029975
20
2.9
20
81
0
71
32
36
13
17
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46031056--46031080
13
1.9
13
100
0
50
64
8
0
28
1.22
46033417--46033480
30
2.2
29
83
8
76
14
25
1
59
1.44
46037051--46037093
14
3.1
14
86
0
59
13
30
6
48
1.69
46037448--46037494
10
4.7
10
84
7
60
82
4
4
8
0.91
46037448--46037493
19
2.3
20
96
3
85
82
4
4
8
0.93
46040974--46041070
30
3.2
30
72
2
88
26
26
16
29
1.97
46043100--46043156
11
5.5
10
73
22
55
77
1
17
3
1.00
46043089--46043156
21
3.2
20
80
12
66
76
2
17
2
1.04
46043100--46043156
5
11.0
5
77
17
55
77
1
17
3
1.00
46043100--46043156
16
3.7
14
80
17
60
77
1
17
3
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325