genome.fa.s4.2.7.7.80.10.50.1000.301.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  301  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92061209--92061252	13	3.4	13	84	9	63	13	9	6	70	1.33
92061222--92061503	89	3.1	88	79	13	322	26	17	17	39	1.91
92061419--92062103	75	9.3	75	86	4	903	30	16	19	33	1.94
92061419--92062081	147	4.5	149	87	4	882	31	15	20	33	1.94
92061439--92062081	222	2.9	220	92	2	1033	31	16	20	32	1.94
92062174--92062206	14	2.4	14	94	0	57	18	12	6	63	1.48
92062009--92062603	90	6.7	87	78	9	462	28	15	18	37	1.91
92062009--92062548	181	3.0	176	79	9	542	27	16	17	37	1.91
92063227--92063353	30	4.2	30	91	0	200	26	47	6	19	1.73
92063880--92063956	25	3.3	24	76	15	74	37	6	2	53	1.41
92063968--92064034	25	2.9	23	78	10	73	29	5	5	58	1.46
92064119--92064169	18	2.7	19	75	22	54	43	5	1	49	1.38
92065771--92065797	5	5.4	5	100	0	54	81	0	0	18	0.69
92067795--92067827	16	2.1	16	94	0	57	51	3	0	45	1.16
92067806--92067849	22	2.0	22	86	0	61	52	0	0	47	1.00
92067876--92067909	15	2.1	16	89	10	52	58	0	0	41	0.98
92067942--92067998	15	3.5	15	73	17	60	50	1	0	47	1.11
92070759--92070837	39	2.0	39	100	0	158	41	7	27	22	1.81
92070819--92070849	2	15.5	2	93	0	53	54	0	45	0	0.99
92075825--92075856	2	16.0	2	100	0	64	50	0	0	50	1.00
92076473--92076525	16	3.4	16	71	23	58	47	0	3	49	1.19
92076475--92076541	31	2.2	31	91	0	107	41	1	2	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92077896--92077948	26	2.0	26	82	7	63	24	15	20	39	1.91
92079434--92079541	26	4.2	26	87	0	162	36	22	7	34	1.82
92084769--92084800	2	16.0	2	100	0	64	50	0	0	50	1.00
92096681--92096947	145	1.8	145	83	1	356	40	8	9	41	1.70
92097301--92097348	19	2.6	19	80	6	55	70	18	10	0	1.15
92102805--92102846	19	2.2	19	86	4	57	26	19	7	47	1.74
92110774--92110939	66	2.5	66	86	1	237	31	19	10	38	1.86
92118132--92118179	2	25.0	2	83	8	64	50	2	2	45	1.25
92118697--92118848	39	3.9	39	92	4	229	29	19	3	48	1.65
92118740--92118854	37	3.2	34	87	12	128	31	16	2	49	1.59
92118864--92118904	21	2.0	21	90	0	64	46	9	2	41	1.50
92119468--92119524	22	2.5	22	82	2	60	35	29	3	31	1.75
92119813--92119851	20	2.0	20	84	0	51	20	0	7	71	1.10
92120922--92120964	17	2.5	17	85	10	61	23	2	0	74	0.93
92120925--92120964	18	2.3	18	91	4	64	22	2	0	75	0.93
92121608--92121640	15	2.3	15	89	5	50	33	0	0	66	0.92
92122447--92122505	27	2.2	28	84	6	77	50	13	1	33	1.52
92122438--92122507	27	2.4	29	71	17	74	48	14	2	34	1.58
92122585--92122617	9	3.7	9	91	0	57	48	21	9	21	1.77
92126960--92127004	20	2.2	20	88	0	63	20	6	6	66	1.38
92140667--92140695	13	2.1	14	93	6	51	13	0	6	79	0.93
92143779--92143842	32	2.0	32	96	0	119	42	28	4	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92151148--92151181	17	2.0	17	88	0	50	20	29	11	38	1.88
92154160--92154237	25	3.2	25	68	17	83	39	25	3	30	1.74
92154144--92154237	47	2.0	47	100	0	188	40	27	4	27	1.75
92155519--92155568	23	2.2	23	82	7	57	42	12	0	46	1.41
92160082--92160126	20	2.3	19	81	7	54	44	2	0	53	1.13
92170835--92170877	10	4.1	10	82	8	50	76	6	0	16	0.99
92171161--92171189	14	2.0	15	93	6	51	37	6	20	34	1.80
92171787--92171908	60	2.0	60	93	3	210	46	16	10	26	1.79
92172793--92172933	74	1.9	74	83	2	185	36	14	17	31	1.91
92173096--92173154	19	2.8	20	76	16	57	35	6	15	42	1.73
92173107--92173149	23	1.9	23	85	4	61	37	4	16	41	1.69
92178218--92178268	19	2.9	17	83	11	66	37	9	17	35	1.83
92179307--92179370	21	3.2	21	62	20	55	32	15	17	34	1.91
92179305--92179383	39	2.0	39	100	0	158	36	12	17	32	1.88
92179319--92179382	21	3.2	21	62	20	55	34	12	20	32	1.90
92184079--92184509	214	2.0	217	86	4	604	42	15	16	25	1.87
92187285--92187343	18	3.3	17	81	9	64	50	15	5	28	1.65
92187284--92187343	9	6.7	9	77	7	50	51	15	5	28	1.63
92187364--92187411	6	7.5	6	77	13	51	16	0	6	77	0.97
92188664--92188699	18	2.0	18	88	0	54	47	2	2	47	1.31
92192351--92192435	42	2.0	42	100	0	170	23	14	14	48	1.80
92199253--92199303	23	2.2	23	92	0	84	31	31	13	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92207219--92207258	2	19.5	2	94	5	71	50	2	0	47	1.14
92210403--92210512	26	4.2	26	90	0	184	33	5	24	36	1.79
92218131--92218637	131	3.9	130	73	7	373	27	18	18	35	1.95
92221211--92221251	18	2.3	18	87	8	57	34	4	2	58	1.32
92246820--92246876	28	2.0	29	83	10	73	15	12	19	52	1.74
92258349--92258420	22	3.2	22	75	7	72	25	18	29	27	1.98
92258452--92258537	28	3.0	28	75	1	73	29	18	25	26	1.98
92258502--92258572	28	2.5	30	80	13	87	36	15	22	25	1.93
92266047--92266212	35	4.6	35	82	8	172	31	10	24	33	1.90
92266047--92266217	75	2.4	75	85	7	221	31	11	23	33	1.90
92273544--92273709	35	4.6	35	82	8	172	31	10	24	33	1.90
92273544--92273714	75	2.4	75	85	7	221	31	11	23	33	1.90
92283886--92284000	55	2.1	56	82	11	139	33	21	26	18	1.96
92283911--92284000	27	3.2	27	85	7	119	31	23	26	18	1.98
92284106--92284197	28	3.3	28	93	3	150	31	7	27	33	1.85
92288236--92288272	16	2.2	17	90	9	58	10	13	8	67	1.41
92288230--92288275	18	2.5	19	80	20	62	13	13	6	67	1.41
92289177--92289232	26	2.2	26	100	0	112	32	3	14	50	1.60
92289865--92290065	87	2.3	87	94	0	348	25	13	22	37	1.92
92293897--92293921	3	8.3	3	100	0	50	32	36	32	0	1.58
92296997--92297161	82	2.0	82	98	0	321	38	8	11	41	1.72
92299794--92299847	28	1.9	28	82	14	67	46	3	3	46	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92302334--92302378	18	2.5	19	78	10	58	42	15	4	37	1.67
92302358--92302430	26	2.8	26	83	8	94	31	16	16	35	1.91
92302411--92302462	18	2.9	18	79	0	59	40	17	11	30	1.85
92302596--92302635	6	6.7	6	88	11	64	50	17	15	17	1.79
92302661--92302685	12	2.1	12	100	0	50	40	20	24	16	1.91
92303084--92303137	2	27.0	2	100	0	108	50	0	0	50	1.00
92304618--92304686	36	1.9	35	85	8	95	60	11	5	21	1.51
92307849--92307878	4	7.2	4	96	3	51	23	3	0	73	0.98
92310128--92310181	25	2.2	24	84	12	67	29	5	1	62	1.28
92310350--92310453	22	4.6	21	75	14	82	36	0	3	59	1.16
92310364--92310451	24	3.8	24	79	13	103	35	0	4	60	1.17
92310391--92310474	35	2.4	35	76	11	91	35	2	4	57	1.33
92310560--92310654	25	3.8	25	79	9	104	35	6	5	52	1.49
92310402--92310624	59	3.9	56	72	12	168	34	3	6	55	1.43
92310559--92310711	22	6.9	21	71	16	69	35	5	5	53	1.46
92310438--92310803	203	1.8	198	84	7	506	34	4	6	54	1.48
92310553--92310711	87	1.8	86	84	9	216	35	5	5	53	1.47
92310985--92311047	24	2.6	24	80	11	67	38	6	4	50	1.49
92311245--92311288	23	2.0	23	86	4	63	36	6	2	54	1.40
92311372--92311443	18	4.0	17	80	18	67	33	4	1	61	1.24
92311372--92311443	37	2.0	37	82	15	89	33	4	1	61	1.24
92313097--92313123	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92313402--92313453	21	2.5	21	80	0	59	61	3	3	30	1.32
92314113--92314248	26	5.2	26	94	0	236	33	5	25	36	1.78
92316027--92316311	136	2.1	136	97	1	536	24	19	24	31	1.98
92319930--92320039	26	4.2	26	97	0	184	33	5	24	36	1.79
92323107--92323241	26	5.2	26	93	0	227	33	5	24	37	1.78
92323107--92323241	52	2.6	52	97	1	254	33	5	24	37	1.78
92325008--92325283	137	2.0	137	100	0	552	24	19	24	31	1.98
92326127--92326202	39	1.9	40	81	7	93	53	6	6	32	1.52
92326306--92326347	11	4.0	11	78	12	52	57	7	0	35	1.26
92326429--92326468	21	1.9	21	89	0	62	52	5	10	32	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325