genome.fa.s4.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  115  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34417172--34417326	48	3.2	48	97	0	292	32	26	5	35	1.80
34420815--34421609	40	19.9	40	88	0	1149	27	28	21	22	1.99
34420811--34421609	80	10.0	80	93	0	1337	27	28	21	22	1.99
34421183--34421250	23	3.2	23	60	23	58	23	29	23	23	1.99
34422301--34422407	48	2.2	48	98	0	205	31	27	5	35	1.80
34435275--34435426	43	3.5	43	80	7	166	29	25	20	24	1.99
34438677--34438844	40	4.2	40	82	3	178	25	26	22	26	2.00
34443032--34443193	40	4.1	40	80	6	141	25	27	21	25	1.99
34445573--34445675	29	3.6	29	92	2	154	26	32	15	26	1.96
34453655--34453757	29	3.6	29	92	2	154	26	32	15	26	1.96
34457255--34457334	29	2.7	29	84	5	99	26	32	15	26	1.95
34465802--34465900	28	3.5	28	84	4	110	27	14	27	31	1.95
34471383--34471646	46	5.7	47	77	11	213	24	29	17	28	1.97
34488667--34488837	40	4.3	39	77	10	159	28	21	26	23	1.99
34496765--34496935	40	4.3	39	77	10	159	28	21	26	23	1.99
34502241--34502358	41	3.1	41	60	28	98	32	17	28	21	1.96
34502209--34502372	71	2.3	71	100	0	328	35	17	28	18	1.94
34519376--34519557	23	8.0	23	91	1	258	32	19	24	23	1.97
34534298--34534370	37	2.0	37	88	0	110	50	12	17	19	1.77
34534308--34534370	19	3.4	19	74	12	67	49	12	19	19	1.79
34534338--34534405	25	2.7	25	81	0	82	45	14	19	20	1.85
34534601--34534647	20	2.3	21	81	7	60	42	23	14	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34534649--34534711	22	2.9	22	72	9	65	34	22	23	19	1.96
34536581--34536671	37	2.4	37	92	1	146	26	31	17	24	1.97
34536711--34536862	48	3.2	48	88	0	241	30	27	6	34	1.82
34536854--34537144	49	5.9	49	95	3	532	30	28	8	31	1.86
34539624--34539738	27	4.3	27	83	4	151	28	20	13	36	1.92
34545315--34545356	22	1.9	22	85	9	59	35	19	2	42	1.64
34552511--34552767	40	6.5	40	91	3	362	24	23	27	24	2.00
34560804--34560980	40	4.5	40	90	4	254	24	23	27	23	2.00
34560804--34560980	79	2.2	79	88	5	252	24	23	27	23	2.00
34565319--34565382	31	2.1	31	100	0	128	12	29	15	42	1.84
34566212--34566272	30	2.0	30	87	0	86	31	19	6	42	1.77
34568653--34568684	13	2.5	13	89	0	55	37	3	12	46	1.57
34568866--34568957	17	5.4	17	64	23	59	54	3	3	39	1.33
34573428--34573690	101	2.6	101	83	3	291	31	14	24	29	1.94
34573567--34573639	33	2.2	33	80	4	85	30	13	27	28	1.94
34581499--34581585	24	3.6	24	96	0	165	21	17	25	35	1.95
34581499--34581607	48	2.3	48	91	3	175	24	17	23	33	1.96
34581499--34581607	24	4.5	24	90	2	157	24	17	23	33	1.96
34589327--34589413	24	3.6	24	96	0	165	21	17	25	35	1.95
34589327--34589435	48	2.3	48	91	3	175	24	17	23	33	1.96
34589327--34589435	24	4.5	24	90	2	157	24	17	23	33	1.96
34591296--34591360	29	2.2	29	100	0	130	29	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34604694--34604762	27	2.6	27	93	4	113	30	27	14	27	1.95
34607136--34607194	30	2.0	30	86	0	82	33	13	23	28	1.93
34616279--34616386	3	36.0	3	88	7	157	34	0	0	64	1.00
34616776--34616815	18	2.2	19	86	4	55	30	0	10	60	1.30
34616762--34616843	30	2.8	29	83	7	94	29	3	8	58	1.45
34618497--34618578	24	3.4	24	71	19	71	2	29	1	67	1.11
34621667--34621691	2	12.5	2	100	0	50	52	0	0	48	1.00
34622271--34622387	49	2.4	50	78	9	123	24	22	16	36	1.94
34624131--34624179	22	2.1	23	82	14	57	30	8	6	55	1.54
34626739--34626776	2	19.0	2	100	0	76	50	0	0	50	1.00
34626910--34626941	12	2.4	14	90	10	50	50	9	0	40	1.35
34627136--34627216	30	2.7	29	75	7	81	25	22	25	25	2.00
34627835--34627906	24	3.0	23	76	17	74	70	1	2	25	1.08
34629851--34630026	63	2.8	63	84	3	237	26	21	26	25	2.00
34636561--34636609	15	3.2	15	85	5	71	40	2	0	57	1.10
34639100--34639148	4	12.2	4	95	0	89	48	24	0	26	1.51
34640029--34640060	6	5.3	6	100	0	64	68	0	0	31	0.90
34640224--34640323	41	2.4	41	89	0	155	35	21	22	22	1.96
34640478--34640529	14	3.7	14	81	0	59	26	0	25	48	1.52
34640567--34640695	7	18.1	7	71	9	73	20	0	41	37	1.53
34641315--34641361	3	15.7	3	100	0	94	68	0	0	31	0.90
34641651--34641759	37	2.9	37	82	8	141	12	46	11	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34650686--34650825	37	3.8	37	94	0	226	23	32	18	25	1.97
34650966--34651303	48	7.0	48	94	0	550	32	27	5	34	1.81
34655032--34655126	28	3.4	28	75	2	100	30	26	20	23	1.98
34655138--34655683	40	13.7	40	95	0	961	25	28	22	23	2.00
34656975--34657067	37	2.5	37	91	0	141	23	29	20	26	1.99
34657213--34657600	48	8.0	48	92	1	623	32	27	5	34	1.80
34657213--34657602	146	2.7	145	93	0	647	33	27	5	34	1.80
34657213--34657600	194	2.0	192	92	2	652	32	27	5	34	1.80
34660481--34660635	43	3.7	42	68	12	120	25	17	30	27	1.97
34662961--34663123	39	4.2	39	92	0	254	23	20	31	24	1.98
34662981--34663152	78	2.2	78	87	3	238	23	21	31	22	1.98
34665637--34665674	19	2.0	19	100	0	76	31	10	15	42	1.81
34670607--34670713	29	3.8	28	87	3	135	29	14	30	24	1.95
34670607--34670687	29	2.8	29	94	1	137	28	14	32	24	1.95
34670607--34670717	27	4.0	27	86	5	132	31	14	29	24	1.94
34670606--34670725	56	2.1	57	84	1	161	30	16	29	23	1.96
34670606--34670738	29	4.7	29	82	8	130	28	16	31	23	1.96
34675132--34675281	39	3.9	39	92	4	241	24	22	31	22	1.98
34675132--34675281	77	1.9	78	90	4	241	24	22	31	22	1.98
34683163--34683314	39	3.9	39	93	0	250	23	22	31	22	1.98
34684805--34685162	49	7.3	49	89	6	485	28	29	8	32	1.88
34684968--34685159	106	1.8	107	97	1	368	28	29	9	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34685017--34685138	57	2.1	57	96	1	226	29	29	8	32	1.86
34691875--34692052	40	4.5	40	80	4	175	23	25	22	28	1.99
34699881--34700049	40	4.2	40	80	4	173	23	26	21	28	1.99
34718427--34718549	45	2.7	46	78	12	119	22	17	26	33	1.96
34720002--34720035	13	2.5	13	90	9	50	35	2	14	47	1.60
34721333--34721497	40	4.2	40	94	2	280	23	23	27	26	2.00
34729241--34729446	40	5.2	40	92	0	333	22	21	27	27	1.99
34730382--34730427	23	2.0	23	100	0	92	52	0	21	26	1.47
34735403--34735510	45	2.4	45	84	4	130	23	16	25	34	1.95
34737847--34737891	20	2.2	20	88	0	63	42	13	0	44	1.43
34738492--34738519	14	2.0	14	100	0	56	85	0	0	14	0.59
34739924--34739991	31	2.3	29	79	16	77	42	0	5	51	1.26
34740525--34740559	12	3.0	12	87	8	54	48	0	17	34	1.47
34741478--34741590	33	3.5	32	79	9	122	36	13	24	25	1.92
34741488--34741580	32	2.9	31	82	4	105	35	13	23	26	1.93
34743855--34744047	39	4.9	39	88	0	233	24	31	20	23	1.98
34743885--34744047	39	4.2	39	91	0	245	25	31	19	23	1.98
34745233--34745286	28	1.9	28	100	0	108	33	9	14	42	1.78
34745719--34745807	30	3.0	30	79	11	94	56	15	17	10	1.67
34745719--34745801	15	5.6	14	73	10	58	55	16	18	9	1.68
34745730--34745807	15	5.2	15	75	9	70	55	15	17	11	1.69
34748760--34748930	93	1.8	93	96	0	315	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34748752--34748927	46	3.8	46	80	12	225	28	28	21	21	1.98
34750874--34750927	28	1.9	28	96	0	99	35	7	14	42	1.74
34751379--34751483	40	2.7	40	83	5	133	21	27	25	24	2.00
34755413--34755617	40	5.2	40	83	2	225	24	25	23	26	2.00
34755413--34755619	79	2.6	80	83	3	231	24	25	23	26	2.00
34761572--34761679	26	4.2	26	93	0	189	32	7	24	36	1.83
34765338--34765451	40	2.9	40	85	3	142	20	29	26	23	1.99
34767363--34767478	31	3.8	30	82	5	151	27	16	27	28	1.97
34767574--34767625	27	1.9	27	88	0	77	38	13	23	25	1.91
34767693--34767748	29	1.9	29	92	0	94	25	12	26	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325