genome.fa.s4.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  165  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50991838--50991932	31	3.1	31	98	0	181	38	15	22	23	1.92
50997993--50998040	25	1.9	25	86	0	69	33	25	16	25	1.96
50998084--50998142	20	3.0	20	97	0	109	37	10	20	32	1.86
50998088--50998142	11	5.4	11	70	16	55	38	10	20	30	1.87
50998193--50998311	24	5.0	24	88	5	170	28	21	22	26	1.99
50998193--50998311	47	2.5	48	89	5	170	28	21	22	26	1.99
50998502--50998596	31	3.1	31	98	0	181	38	15	22	23	1.92
51002831--51002878	25	1.9	25	86	0	69	33	25	16	25	1.96
51002922--51002980	20	3.0	20	97	0	109	37	10	20	32	1.86
51002926--51002980	11	5.4	11	70	16	55	38	10	20	30	1.87
51003031--51003149	24	5.0	24	88	5	170	28	21	22	26	1.99
51003031--51003149	47	2.5	48	89	5	170	28	21	22	26	1.99
51003339--51003433	31	3.1	31	96	0	172	40	15	21	23	1.91
51006149--51006358	72	2.9	72	89	2	314	55	15	7	21	1.64
51006785--51006832	18	2.7	18	96	0	87	35	12	16	35	1.87
51012918--51012970	26	2.0	26	85	7	72	37	22	15	24	1.92
51015056--51015095	2	20.0	2	100	0	80	50	0	0	50	1.00
51018933--51018995	25	2.8	21	71	17	63	30	1	14	53	1.50
51020212--51020269	29	2.0	29	89	0	89	60	3	1	34	1.24
51020355--51020400	19	2.3	20	96	3	85	47	17	10	23	1.79
51020384--51020421	14	2.7	14	91	0	58	36	18	7	36	1.80
51026496--51026544	25	2.0	25	95	0	89	26	4	22	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51030794--51030991	71	2.8	70	91	3	285	33	17	28	20	1.95
51030828--51030991	71	2.3	71	98	0	319	34	17	28	18	1.94
51054997--51055180	40	4.6	40	86	8	241	25	27	23	24	2.00
51060028--51060195	40	4.2	40	82	2	196	25	27	22	25	2.00
51073940--51073984	16	2.6	17	82	10	56	28	11	11	48	1.73
51078886--51078916	13	2.4	13	94	0	53	35	41	9	12	1.76
51081749--51081896	40	3.7	40	90	5	212	22	26	29	21	1.99
51081705--51081928	40	5.6	39	81	6	175	25	24	27	22	2.00
51081706--51081937	80	2.9	77	77	9	209	24	24	28	22	2.00
51081789--51081968	80	2.2	80	81	1	191	21	26	29	22	1.99
51089892--51090032	39	3.8	36	85	9	169	24	24	30	21	1.99
51089888--51090032	74	2.0	74	85	8	197	24	23	29	22	1.99
51097689--51097839	40	3.8	40	77	13	134	27	23	26	22	2.00
51097725--51097855	40	3.3	40	79	2	156	25	23	27	23	2.00
51100797--51100972	46	3.8	46	77	12	198	20	19	29	30	1.97
51100794--51100964	93	1.8	93	92	0	288	20	20	29	29	1.98
51103484--51103701	46	4.8	44	77	8	179	26	20	31	22	1.98
51103484--51103698	92	2.3	90	82	4	234	26	20	31	22	1.98
51120632--51120679	25	1.9	25	86	0	69	33	25	16	25	1.96
51120723--51120781	20	3.0	20	97	0	109	37	10	20	32	1.86
51120727--51120781	11	5.4	11	70	16	55	38	10	20	30	1.87
51120832--51120937	24	4.4	24	93	1	167	29	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51121143--51121237	31	3.1	31	92	3	138	36	16	24	22	1.94
51131276--51131519	40	6.2	40	87	5	331	21	28	24	25	1.99
51139433--51139682	40	6.2	40	91	1	385	22	28	24	25	1.99
51142592--51142688	50	1.9	50	85	0	131	35	21	21	21	1.96
51146769--51147039	46	5.8	47	79	8	243	26	20	31	21	1.98
51146770--51147039	140	1.9	141	83	6	352	27	20	31	21	1.98
51155451--51155479	2	15.0	2	92	7	51	51	0	0	48	1.00
51168023--51168297	46	5.9	47	72	13	185	28	19	28	23	1.98
51168023--51168297	140	2.0	141	81	5	333	28	19	28	23	1.98
51170605--51170809	40	5.1	40	94	1	340	26	28	22	21	1.99
51172251--51172320	27	2.6	27	95	2	122	30	27	14	28	1.95
51180067--51180136	27	2.6	27	95	2	122	30	27	14	28	1.95
51183039--51183108	27	2.6	27	95	2	122	30	27	14	28	1.95
51192886--51193143	40	6.5	40	90	2	360	26	27	23	22	1.99
51199733--51199794	30	2.1	30	81	6	72	29	22	11	37	1.89
51201172--51201219	24	2.0	24	100	0	96	29	8	20	41	1.81
51202450--51202596	40	3.7	40	88	2	199	25	21	27	25	1.99
51210188--51210374	40	4.7	40	91	2	261	25	19	27	27	1.99
51213901--51213991	27	3.4	27	82	0	101	36	16	18	28	1.93
51214324--51214429	28	3.6	28	77	12	113	21	22	27	28	1.99
51214314--51214472	61	2.6	62	90	1	239	23	23	25	27	2.00
51219353--51219527	39	4.3	40	86	7	223	25	26	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51227009--51227230	40	5.5	39	84	7	268	26	25	23	24	2.00
51230475--51230695	40	5.6	40	92	1	347	23	21	30	25	1.99
51238528--51238747	40	5.6	40	90	2	329	23	20	30	26	1.98
51238528--51238747	79	2.8	80	90	3	329	23	20	30	26	1.98
51246021--51246241	40	5.6	40	85	7	290	25	26	23	24	2.00
51246021--51246241	82	2.8	80	86	6	290	25	26	23	24	2.00
51246021--51246241	122	1.8	117	87	4	325	25	26	23	24	2.00
51252267--51252407	27	5.2	27	90	0	201	33	18	22	25	1.97
51253689--51253807	29	4.2	29	75	10	102	27	26	13	31	1.94
51255499--51255623	61	2.0	61	90	0	196	23	18	25	32	1.97
51255507--51255663	61	2.6	61	81	0	143	22	21	26	29	1.99
51259333--51259516	39	4.6	41	82	9	213	23	22	27	25	2.00
51259334--51259514	79	2.3	81	85	6	246	24	23	27	24	2.00
51262408--51262506	38	2.6	38	77	1	99	41	2	7	49	1.41
51262483--51262520	16	2.3	17	86	13	53	39	0	10	50	1.37
51266704--51266869	40	4.2	40	83	4	194	25	26	21	26	2.00
51267691--51267736	17	2.5	19	74	22	53	34	23	17	23	1.96
51274705--51274871	40	4.2	41	83	5	182	25	26	21	26	2.00
51275695--51275740	17	2.5	19	74	22	53	34	23	17	23	1.96
51276797--51276838	20	2.2	20	87	12	61	57	4	16	21	1.58
51277288--51277317	16	1.9	16	93	6	53	30	0	20	50	1.49
51277590--51277627	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51282162--51282203	16	2.6	16	75	14	50	38	9	19	33	1.84
51285378--51285483	28	3.8	28	83	2	106	31	14	26	28	1.95
51287646--51287778	26	5.1	26	76	4	115	30	36	15	18	1.92
51289921--51290128	40	5.2	40	90	1	303	23	21	28	26	1.99
51295558--51295734	87	2.0	87	100	0	354	33	10	16	39	1.83
51298185--51298237	15	3.6	15	85	10	74	13	16	11	58	1.63
51300515--51300687	46	3.7	46	78	14	194	21	19	28	30	1.98
51300512--51300682	93	1.8	93	92	2	290	21	19	29	29	1.98
51312629--51312836	55	3.8	54	79	8	226	34	16	25	24	1.95
51312637--51312836	108	1.8	109	87	6	298	33	16	25	24	1.96
51316734--51316951	40	5.5	40	87	3	273	22	23	28	24	2.00
51329903--51330268	47	7.7	48	88	5	503	32	7	30	29	1.85
51329903--51330268	96	3.8	96	87	7	521	32	7	30	29	1.85
51329903--51330268	145	2.6	144	93	2	614	32	7	30	29	1.85
51340814--51340963	54	2.8	54	90	0	228	32	7	19	40	1.79
51340810--51340970	81	2.0	81	85	2	216	33	8	19	39	1.81
51340810--51340963	27	5.7	27	80	3	193	33	7	19	39	1.80
51340958--51341206	27	9.2	27	84	6	299	39	8	23	28	1.84
51340957--51341206	54	4.6	54	91	0	401	39	8	24	28	1.84
51340956--51341206	81	3.1	81	83	6	337	39	8	23	28	1.84
51343463--51343512	20	2.5	20	83	0	64	24	24	14	38	1.92
51346088--51346116	14	2.1	14	100	0	58	79	0	20	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51346012--51346118	50	2.2	48	79	14	119	71	2	17	8	1.24
51349087--51349131	20	2.2	20	88	0	63	24	24	15	35	1.94
51351416--51351498	26	3.1	26	73	13	69	36	26	19	18	1.94
51357808--51357901	29	3.2	29	98	0	179	29	15	27	26	1.96
51357804--51357938	58	2.3	58	84	3	175	26	15	31	25	1.96
51365728--51365821	29	3.2	29	96	0	170	29	17	26	26	1.97
51365724--51365851	58	2.2	58	83	4	161	28	16	30	25	1.96
51367148--51367323	46	3.8	46	80	12	225	21	21	28	28	1.98
51367144--51367315	93	1.8	93	96	0	317	20	21	29	27	1.98
51370245--51370321	15	5.2	15	72	9	68	10	18	15	55	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325