genome.fa.s4.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  185  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56923622--56923670	17	2.8	18	74	22	50	24	18	22	34	1.96
56924493--56924659	40	4.2	40	79	6	169	25	21	27	25	1.99
56930863--56930926	31	2.1	30	85	2	83	25	20	15	39	1.92
56931141--56931353	23	9.1	23	85	2	282	27	21	22	28	1.99
56931141--56931354	47	4.6	47	85	2	288	27	21	22	28	1.99
56931120--56931354	70	3.3	70	89	2	346	27	21	22	28	1.99
56931406--56931472	20	3.3	20	93	0	116	32	20	11	34	1.90
56931406--56931461	11	5.5	11	71	16	57	32	19	12	35	1.89
56931509--56931556	25	1.9	25	86	0	69	25	16	25	33	1.96
56935088--56935228	40	3.6	39	80	7	142	26	22	28	22	1.99
56935088--56935198	39	2.8	39	83	8	134	27	22	27	21	1.99
56943153--56943336	40	4.6	39	79	6	156	28	22	26	22	1.99
56950773--56950802	15	2.0	15	93	0	51	36	0	16	46	1.47
56952752--56952781	2	15.0	2	92	0	51	46	0	3	50	1.18
56953942--56954103	43	3.8	42	79	8	150	30	27	17	24	1.97
56953946--56954103	44	3.7	43	76	10	153	30	27	17	24	1.97
56956567--56956919	49	7.4	49	91	5	571	29	9	32	29	1.88
56956621--56956898	89	3.0	89	93	4	439	28	8	33	29	1.87
56956567--56956919	138	2.5	143	93	4	581	29	9	32	29	1.88
56956643--56956929	89	3.1	90	84	11	377	29	8	32	29	1.86
56957021--56957105	37	2.3	37	95	0	152	24	20	34	21	1.97
56958922--56959166	40	6.1	40	95	0	346	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56959340--56959532	29	6.7	29	96	0	341	26	16	32	24	1.96
56962816--56963168	49	7.4	49	91	5	571	29	9	32	29	1.88
56962870--56963147	89	3.0	89	93	4	439	28	8	33	29	1.87
56962816--56963168	138	2.5	143	93	4	581	29	9	32	29	1.88
56962892--56963178	89	3.1	90	84	11	377	29	8	32	29	1.86
56963270--56963354	37	2.3	37	95	0	152	24	20	34	21	1.97
56967342--56967485	43	3.4	43	82	3	166	33	25	14	27	1.94
56970734--56970843	44	2.6	42	82	7	123	24	19	21	34	1.96
56970778--56970874	42	2.3	42	80	5	106	28	16	21	32	1.95
56995383--56995549	40	4.2	40	82	2	185	24	26	22	26	2.00
57003384--57003551	40	4.2	40	82	1	185	24	26	22	26	2.00
57012318--57012367	23	2.2	23	86	13	68	42	20	14	24	1.88
57014036--57014061	10	2.6	10	100	0	52	42	23	0	34	1.54
57016144--57016208	29	2.2	29	97	0	121	29	16	27	26	1.97
57024170--57024234	29	2.2	29	97	0	121	29	16	27	26	1.97
57040173--57040278	39	2.7	38	83	11	117	21	28	26	23	1.99
57044222--57044547	165	2.0	164	97	1	618	28	26	20	24	1.99
57050932--57051030	28	3.5	29	80	6	105	30	26	15	28	1.96
57054265--57054301	15	2.4	16	86	13	51	35	13	2	48	1.57
57056226--57056423	71	2.8	70	92	3	294	33	17	28	20	1.95
57056292--57056409	41	3.1	41	60	28	98	32	17	28	21	1.96
57056260--57056423	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57058974--57059034	30	2.0	30	87	0	86	31	22	6	39	1.80
57071047--57071132	37	2.3	37	97	0	163	23	33	19	23	1.97
57071181--57071448	48	5.6	48	93	0	428	29	27	8	34	1.86
57071426--57071595	47	3.6	47	97	0	313	29	30	8	31	1.87
57071176--57071589	96	4.3	95	86	3	338	29	28	8	33	1.86
57071176--57071495	144	2.2	143	83	3	356	29	27	8	34	1.86
57075065--57075455	40	9.8	40	92	2	608	25	26	20	26	1.99
57075084--57075455	199	1.9	199	93	1	638	26	26	20	26	1.99
57077351--57077436	37	2.3	37	97	0	163	23	33	19	23	1.97
57077485--57077752	48	5.6	48	93	0	428	29	27	8	34	1.86
57077730--57077899	47	3.6	47	96	0	304	29	29	9	31	1.88
57077480--57077893	96	4.3	95	86	3	329	29	28	8	33	1.86
57077480--57077799	144	2.2	143	83	3	356	29	27	8	34	1.86
57090966--57091115	28	5.4	28	91	2	223	26	13	30	30	1.94
57096407--57096536	47	2.8	47	91	0	197	32	29	16	22	1.95
57101808--57101968	42	3.8	41	77	7	153	29	24	14	30	1.95
57114454--57114612	43	3.7	43	81	7	171	30	24	19	25	1.98
57118942--57119399	49	9.3	49	94	0	754	31	8	29	30	1.87
57119468--57119554	37	2.3	36	92	5	138	20	18	33	27	1.96
57121406--57121451	18	2.6	17	80	10	56	76	0	13	10	1.03
57122777--57122849	29	2.5	29	93	0	119	27	15	30	27	1.96
57129463--57129512	18	2.8	18	77	14	59	74	0	14	12	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57130838--57130910	29	2.5	29	93	0	119	27	15	30	27	1.96
57133670--57133793	26	4.7	27	72	9	85	40	22	8	28	1.84
57133777--57133938	27	6.0	27	85	0	225	35	16	19	28	1.93
57133751--57133926	81	2.2	81	86	3	248	38	17	17	27	1.91
57139685--57139754	27	2.6	27	88	0	95	25	21	10	42	1.84
57142555--57142734	40	4.5	40	78	8	179	24	25	23	26	2.00
57142583--57142734	39	3.8	39	82	2	160	25	26	22	26	2.00
57142555--57142732	79	2.2	81	83	5	218	24	25	23	26	2.00
57143441--57143470	2	15.0	2	100	0	60	50	0	0	50	1.00
57150645--57150815	40	4.2	40	76	9	143	26	25	21	27	1.99
57152250--57152323	29	2.6	29	97	0	139	27	24	12	36	1.91
57152248--57152377	29	4.5	29	87	4	122	29	26	13	31	1.93
57152247--57152377	58	2.3	57	82	5	156	29	26	12	31	1.93
57161421--57161452	15	2.1	15	100	0	64	43	6	18	31	1.75
57164391--57164502	27	4.2	26	77	7	107	16	25	21	36	1.94
57166459--57166697	43	5.7	43	75	9	213	32	25	17	25	1.97
57166455--57166697	84	2.9	84	83	6	296	32	25	16	25	1.96
57166857--57166915	29	2.0	29	100	0	118	30	16	6	45	1.74
57173250--57173415	40	4.2	40	83	4	194	25	26	21	26	2.00
57174235--57174280	17	2.5	19	74	22	53	34	23	17	23	1.96
57181238--57181403	40	4.2	40	83	4	194	25	26	21	26	2.00
57182225--57182270	17	2.5	19	74	22	53	34	23	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57184226--57184333	12	8.8	12	68	13	60	51	10	16	21	1.73
57184262--57184331	25	2.8	25	84	0	95	48	11	18	21	1.79
57184241--57184334	6	15.3	6	66	16	50	50	11	17	21	1.77
57184456--57184537	27	3.1	26	87	5	110	35	19	24	20	1.96
57184759--57184885	27	4.7	27	78	6	123	24	23	18	33	1.97
57184759--57184885	54	2.4	54	87	0	173	24	23	18	33	1.97
57187378--57187527	43	3.5	41	75	11	124	26	21	26	26	1.99
57190528--57190757	43	5.4	44	76	12	221	30	26	17	24	1.97
57190528--57190757	84	2.7	84	87	2	320	30	26	17	24	1.97
57194765--57194800	16	2.2	16	90	0	54	63	16	16	2	1.42
57198855--57199023	46	3.7	46	74	12	159	29	27	20	22	1.99
57199448--57199507	30	2.0	30	90	0	93	30	25	8	36	1.85
57212084--57212144	31	2.0	30	84	9	79	52	21	1	24	1.56
57214563--57214729	40	4.2	40	79	6	169	26	22	26	24	2.00
57222562--57222728	40	4.2	40	80	6	169	26	22	26	24	2.00
57230421--57230459	21	1.9	20	89	5	60	23	2	25	48	1.63
57231052--57231212	43	3.7	43	71	10	141	24	16	25	33	1.96
57233496--57233566	33	2.2	33	97	0	133	15	26	19	38	1.92
57235996--57236111	40	2.9	39	78	11	110	29	22	18	30	1.97
57237853--57237890	15	2.4	17	91	8	62	39	13	0	47	1.42
57238890--57239087	49	4.0	50	82	3	229	29	24	17	28	1.97
57243375--57243515	49	2.9	49	85	1	192	31	28	14	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57243375--57243575	99	2.0	99	85	3	269	29	27	16	26	1.97
57248212--57248378	90	1.9	90	83	5	221	26	27	19	26	1.99
57248302--57248422	42	2.9	42	79	0	125	30	28	15	24	1.96
57248431--57248482	27	1.9	27	96	0	95	25	25	19	30	1.98
57248386--57248530	75	1.9	75	84	2	193	28	26	17	27	1.98
57248458--57248587	48	2.7	48	80	2	136	27	26	16	28	1.97
57255142--57255214	29	2.5	29	93	0	110	27	30	15	27	1.96
57259817--57259967	40	3.8	40	77	11	132	27	24	26	21	2.00
57259854--57259983	40	3.2	40	79	2	154	23	23	28	23	2.00
57262222--57262391	43	4.0	43	82	3	216	22	17	28	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325