genome.fa.s4.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  139  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42371470--42371617	78	1.9	79	86	6	212	25	26	21	26	2.00
42371468--42371617	40	3.8	40	85	7	209	26	26	21	26	1.99
42373363--42373530	40	4.2	40	77	3	169	25	21	26	26	1.99
42373363--42373530	80	2.1	80	81	3	187	25	21	26	26	1.99
42377840--42377880	19	2.2	19	86	8	57	34	4	7	53	1.50
42377807--42377916	54	2.0	53	87	6	159	36	6	10	46	1.65
42384355--42384601	40	6.2	40	91	2	374	23	21	29	26	1.99
42392601--42392847	40	6.2	40	91	2	374	23	21	29	26	1.99
42392601--42392847	119	2.1	120	90	3	383	23	21	29	26	1.99
42392601--42392847	79	3.1	80	91	2	374	23	21	29	26	1.99
42398368--42398428	5	11.8	5	75	13	52	73	3	8	14	1.19
42398368--42398432	21	2.8	24	80	17	75	73	3	7	15	1.18
42400719--42400848	40	3.2	40	83	4	165	22	25	29	23	1.99
42407914--42408138	124	1.8	124	86	1	326	31	10	24	34	1.89
42408133--42408262	40	3.2	40	83	4	165	22	25	29	23	1.99
42411139--42411204	20	3.3	19	72	8	60	13	34	19	31	1.91
42411103--42411207	40	2.6	40	90	0	165	17	28	18	36	1.93
42415578--42415632	7	8.3	7	85	4	62	10	0	41	47	1.39
42415595--42415631	6	5.8	6	93	3	56	2	0	48	48	1.15
42417764--42418045	142	2.0	143	91	0	458	28	10	22	38	1.87
42425446--42425665	46	4.8	46	79	9	209	24	30	18	26	1.98
42427995--42428022	11	2.5	11	100	0	56	28	17	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42428008--42428221	48	4.4	49	83	5	233	25	21	30	23	1.99
42428039--42428221	98	1.9	99	86	3	262	25	19	31	22	1.98
42431394--42431561	40	4.2	40	85	5	198	26	27	22	23	1.99
42431394--42431561	80	2.1	80	86	4	232	26	27	22	23	1.99
42438842--42438891	17	2.8	17	87	9	64	84	0	14	2	0.72
42438842--42438891	9	5.4	9	81	13	57	84	0	14	2	0.72
42439771--42440919	206	5.6	206	88	2	1638	30	18	22	28	1.97
42439771--42440919	403	2.8	406	89	1	1712	30	18	22	28	1.97
42442734--42442768	17	2.1	17	89	5	54	28	8	0	62	1.24
42442901--42442955	23	2.5	23	77	13	62	36	1	1	60	1.18
42448564--42448631	20	3.5	20	67	16	52	16	29	23	30	1.96
42448566--42448766	39	5.2	38	80	5	222	16	29	20	33	1.95
42448566--42448766	78	2.6	78	86	1	251	16	29	20	33	1.95
42448656--42448720	20	3.3	20	66	12	53	15	35	20	29	1.93
42453453--42453497	23	2.0	23	86	0	63	75	0	22	2	0.91
42454611--42454696	43	2.0	43	90	0	136	54	2	19	23	1.55
42454617--42454681	16	4.4	16	67	25	52	56	3	20	20	1.55
42454667--42454728	32	1.9	32	83	6	81	51	0	22	25	1.48
42462346--42462465	29	4.2	29	86	3	163	25	14	30	29	1.95
42463868--42463980	43	2.7	41	80	6	127	27	19	22	30	1.98
42467316--42467374	24	2.4	24	86	11	75	55	6	5	32	1.48
42475694--42475857	71	2.3	71	100	0	328	18	28	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42475694--42475891	71	2.8	70	91	3	258	20	28	17	33	1.95
42482803--42482966	71	2.3	71	100	0	328	18	28	17	35	1.94
42482803--42483000	71	2.8	70	91	3	258	20	28	17	33	1.95
42486330--42486361	15	2.1	15	100	0	64	56	21	0	21	1.43
42488045--42488206	71	2.3	72	85	3	229	37	19	26	17	1.93
42493071--42493278	40	5.2	39	81	3	193	24	25	24	25	2.00
42493071--42493277	80	2.6	80	81	3	229	24	26	24	25	2.00
42501110--42501317	40	5.2	39	81	3	193	24	25	24	25	2.00
42501110--42501316	80	2.6	80	81	3	229	24	26	24	25	2.00
42506370--42506531	71	2.3	72	84	3	220	37	19	25	17	1.93
42508403--42508522	41	2.9	41	81	3	132	35	25	15	25	1.94
42508423--42508533	43	2.6	43	81	5	129	35	26	14	24	1.94
42512915--42513032	42	2.7	44	84	6	143	27	17	24	30	1.97
42522495--42522753	46	5.5	47	72	12	189	28	19	30	21	1.97
42526228--42526542	53	5.8	53	75	2	234	20	23	18	38	1.94
42526291--42526530	55	4.4	55	76	2	234	20	22	19	36	1.95
42526240--42526530	108	2.7	107	91	1	438	20	23	18	37	1.94
42535664--42535785	46	2.6	46	85	7	149	30	18	29	22	1.97
42536942--42536997	29	2.0	27	86	10	76	16	17	46	19	1.84
42544735--42544809	29	2.6	29	89	4	107	26	16	32	25	1.96
42544845--42544869	2	12.5	2	100	0	50	48	0	0	52	1.00
42552643--42552717	29	2.6	29	89	4	107	26	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42557156--42557330	44	3.9	44	81	10	217	21	20	29	28	1.98
42560251--42560314	15	4.4	15	84	11	89	10	15	12	60	1.58
42562691--42562866	46	3.8	45	81	10	212	21	21	29	28	1.98
42562688--42562858	93	1.8	93	94	0	306	21	21	29	27	1.98
42565238--42565324	43	2.0	43	93	0	147	35	5	20	37	1.77
42572628--42572721	49	1.9	49	88	0	143	43	7	22	26	1.79
42576334--42576556	46	4.8	43	75	18	157	29	19	28	22	1.98
42581495--42581543	25	2.0	25	83	0	62	38	0	16	44	1.48
42584824--42584927	29	3.6	29	76	5	86	24	17	33	25	1.96
42584960--42584992	2	16.5	2	100	0	66	48	0	0	51	1.00
42592765--42592837	29	2.5	29	100	0	146	28	15	28	27	1.96
42592765--42592897	58	2.3	59	80	5	137	25	16	32	25	1.96
42597473--42597505	15	2.1	16	88	5	50	15	6	9	69	1.34
42612198--42612300	37	2.8	39	73	16	94	41	2	3	51	1.35
42612885--42612960	31	2.5	32	80	8	95	50	7	14	27	1.71
42612978--42613009	13	2.4	14	90	10	50	40	0	0	59	0.97
42613211--42613267	28	2.0	28	93	0	96	10	17	24	47	1.79
42615400--42615574	53	3.1	52	64	22	120	50	7	1	40	1.40
42615371--42615605	115	2.0	116	95	0	427	51	5	2	39	1.40
42615510--42615578	31	2.2	32	82	10	79	50	7	1	40	1.39
42621040--42621106	22	3.1	22	71	4	64	20	25	19	34	1.96
42621121--42621269	43	3.4	43	88	2	201	22	16	33	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42622706--42622827	9	12.9	9	75	10	109	32	1	19	45	1.60
42622730--42622822	48	1.9	48	84	0	123	34	1	20	44	1.59
42622710--42622827	57	2.1	57	86	0	164	32	1	19	46	1.60
42624364--42624391	2	14.0	2	100	0	56	50	0	0	50	1.00
42626704--42626767	24	2.6	25	85	5	85	35	15	43	4	1.68
42627017--42627387	158	2.4	156	76	11	357	29	21	15	33	1.94
42627976--42628006	2	15.5	2	100	0	62	51	0	0	48	1.00
42628380--42628424	14	3.2	14	81	12	65	48	26	0	24	1.51
42628696--42628815	7	17.1	7	76	6	109	39	41	0	19	1.51
42629055--42629274	41	5.4	41	87	1	327	18	23	23	35	1.96
42629055--42629274	81	2.7	82	88	2	329	18	23	23	35	1.96
42629055--42629274	122	1.8	122	89	0	350	18	23	23	35	1.96
42629244--42629303	30	2.0	30	86	0	84	8	18	21	51	1.72
42629357--42629382	12	2.2	12	100	0	52	46	30	15	7	1.74
42629835--42629897	30	2.1	30	100	0	126	31	12	9	46	1.74
42631612--42631704	46	2.0	46	91	0	150	34	23	16	25	1.95
42633530--42633597	29	2.3	29	89	0	100	25	20	22	32	1.98
42634186--42634226	20	2.0	20	90	0	64	53	9	7	29	1.60
42640175--42640212	16	2.4	16	86	8	51	50	0	0	50	1.00
42644683--42644839	47	3.4	46	73	8	149	23	26	19	30	1.98
42646446--42646549	52	2.0	52	100	0	208	32	30	7	28	1.85
42652254--42652377	44	2.7	45	83	5	151	24	27	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42656614--42656676	23	2.7	24	82	5	74	30	39	11	19	1.86
42656614--42656710	24	4.1	24	78	2	79	31	38	11	18	1.86
42662127--42662255	50	2.5	51	89	2	197	35	16	24	24	1.95
42662231--42662378	31	4.8	31	89	0	224	26	20	27	25	1.99
42662398--42662610	47	4.6	47	81	8	197	28	15	27	29	1.96
42662401--42662654	42	5.6	48	83	8	209	29	14	26	29	1.95
42665376--42665423	25	2.0	24	91	4	78	43	4	2	50	1.33
42667045--42667164	37	3.2	37	91	0	186	20	32	23	23	1.98
42667282--42667719	47	9.3	47	93	0	705	28	29	9	33	1.88
42667332--42667411	25	3.3	25	71	16	87	32	28	5	33	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325