genome.fa.s4.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  113  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33659307--33659432	3	41.3	3	68	15	62	58	2	7	31	1.38
33659538--33659735	3	64.0	3	66	13	64	59	2	8	29	1.41
33659654--33659734	20	3.8	20	72	20	65	62	1	4	30	1.24
33659651--33659735	23	3.7	23	70	17	70	63	1	4	30	1.22
33659840--33659868	14	2.0	15	93	6	51	55	0	6	37	1.27
33659911--33659940	14	2.1	14	93	0	51	66	0	3	30	1.07
33659885--33659991	19	6.1	16	73	18	56	57	0	9	33	1.31
33661526--33661574	24	2.0	24	100	0	98	24	12	12	51	1.73
33667542--33667623	27	3.0	27	94	0	137	42	19	7	30	1.78
33689468--33689496	5	5.8	5	100	0	58	79	0	0	20	0.74
33695085--33695208	41	3.0	41	70	12	108	29	27	16	25	1.97
33697219--33697292	35	2.2	33	88	7	105	47	9	5	37	1.59
33699959--33700132	48	3.6	48	78	3	188	29	17	29	23	1.97
33705316--33705345	14	2.1	14	93	0	51	63	10	6	20	1.47
33717138--33717269	48	2.8	48	87	4	178	32	19	26	21	1.97
33720318--33720480	39	4.2	39	91	0	263	22	20	33	23	1.97
33720318--33720511	39	4.9	39	89	0	253	22	21	32	23	1.98
33725206--33725277	28	2.5	28	88	6	101	26	26	16	30	1.97
33733120--33733191	28	2.5	28	88	6	101	26	26	16	30	1.97
33739261--33739423	39	4.2	39	91	0	263	22	20	33	23	1.97
33739261--33739454	39	4.9	39	89	0	253	22	21	32	23	1.98
33743075--33743343	28	9.5	28	74	3	223	30	34	18	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33743045--33743345	57	5.2	57	91	0	476	29	35	17	17	1.93
33743100--33743315	29	7.6	29	76	5	224	30	36	16	16	1.91
33753564--33753658	43	2.2	43	82	0	118	26	17	26	29	1.98
33757788--33757972	40	4.7	40	82	10	220	24	23	25	25	2.00
33757790--33757972	79	2.3	80	83	8	223	24	23	26	25	2.00
33757844--33758005	79	2.1	79	82	9	197	27	20	26	25	1.99
33763561--33763689	48	2.7	49	78	9	147	19	27	23	30	1.98
33763561--33763783	97	2.3	95	81	6	229	21	27	20	30	1.98
33763657--33763792	46	2.9	47	77	9	143	22	28	18	30	1.97
33774077--33774177	28	3.5	28	86	6	114	28	13	27	29	1.95
33774106--33774177	29	2.5	28	91	6	110	29	13	27	29	1.95
33780875--33781041	40	4.2	40	82	2	185	24	26	22	26	2.00
33788867--33789033	40	4.2	40	82	2	185	24	26	22	26	2.00
33793106--33793213	40	2.7	38	85	8	128	21	29	25	23	1.99
33793065--33793213	80	1.9	80	81	2	183	22	30	24	22	1.99
33801137--33801285	80	1.9	80	81	2	183	22	30	24	22	1.99
33801178--33801285	40	2.7	38	85	8	128	21	29	25	23	1.99
33804792--33804832	3	13.7	3	89	0	64	39	0	26	34	1.57
33804787--33804832	12	3.8	12	91	0	74	39	0	23	36	1.55
33804787--33804847	9	6.9	9	84	3	61	39	1	24	34	1.65
33805111--33805140	16	1.9	16	93	6	53	66	0	0	33	0.92
33813350--33813566	79	2.7	80	76	10	185	23	29	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33813459--33813566	40	2.7	40	86	0	135	21	30	25	23	1.99
33844561--33844596	2	18.0	2	88	0	54	52	0	2	44	1.15
33847568--33847696	49	2.6	49	85	2	161	23	28	20	27	1.99
33847709--33847829	46	2.6	46	85	5	154	22	28	21	27	1.99
33850343--33850401	29	2.0	29	100	0	118	47	0	15	37	1.45
33850504--33850726	58	3.9	58	77	6	179	29	14	29	27	1.95
33850508--33850638	29	4.5	29	87	1	174	27	16	31	25	1.96
33850626--33850726	28	3.5	28	86	6	114	29	13	26	29	1.94
33858078--33858130	27	2.0	27	84	0	70	39	9	9	41	1.70
33861405--33861452	15	3.1	15	87	6	60	64	2	33	0	1.05
33861424--33861456	3	11.7	3	87	12	52	66	0	33	0	0.92
33861424--33861456	8	3.9	9	88	11	52	66	0	33	0	0.92
33863542--33863569	14	2.0	14	100	0	56	42	21	0	35	1.53
33864380--33864442	33	1.9	33	83	0	81	22	41	15	20	1.90
33864937--33865038	35	3.1	35	60	21	83	47	7	4	40	1.54
33864927--33865053	64	2.0	64	96	0	236	45	8	6	39	1.60
33869709--33869734	13	2.0	13	100	0	52	15	38	30	15	1.88
33897365--33897414	15	3.4	15	86	2	66	10	18	12	60	1.59
33904995--33905080	29	3.0	29	85	9	108	26	32	15	25	1.95
33905296--33905332	16	2.3	16	95	0	65	16	24	13	45	1.83
33924878--33924919	18	2.4	19	80	15	54	38	23	4	33	1.76
33929245--33929342	49	2.0	49	97	0	187	24	31	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33931047--33931157	43	2.6	43	81	8	136	26	16	27	30	1.96
33935833--33935919	24	3.6	24	96	0	165	21	17	25	35	1.95
33935833--33935941	48	2.3	48	91	3	175	24	17	23	33	1.96
33935833--33935941	24	4.5	24	90	2	157	24	17	23	33	1.96
33939736--33940128	49	8.4	49	87	9	597	28	9	33	29	1.88
33939741--33940107	89	4.0	89	93	4	608	28	8	33	28	1.88
33939741--33940128	138	2.8	134	86	10	525	28	9	32	28	1.88
33940230--33940314	37	2.3	37	95	0	152	24	20	34	21	1.97
33943545--33943611	26	2.5	26	80	2	71	43	25	7	23	1.80
33943596--33943746	53	2.8	53	82	2	142	39	17	8	33	1.81
33943620--33943735	26	4.4	26	75	12	94	38	14	10	36	1.81
33943545--33943748	80	2.6	79	76	9	198	39	20	8	31	1.83
33943545--33943748	27	7.7	27	75	2	162	39	20	8	31	1.83
33943732--33943981	27	9.3	27	86	0	302	36	18	20	24	1.95
33943732--33943963	81	2.9	81	92	0	374	37	19	19	23	1.94
33944408--33944473	22	3.0	22	76	8	71	19	24	22	33	1.97
33944633--33944710	26	3.0	26	83	7	86	17	23	19	39	1.92
33944642--33944711	27	2.7	26	82	10	88	20	22	18	38	1.93
33944829--33944895	25	2.7	25	77	9	73	20	17	10	50	1.75
33947537--33947686	39	3.8	39	87	0	183	22	31	23	23	1.98
33947567--33947686	39	3.1	39	91	1	186	22	31	22	23	1.98
33949376--33949476	39	2.5	40	82	1	123	29	22	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33949376--33949518	40	3.6	40	83	2	164	28	23	25	22	1.99
33949416--33949558	40	3.6	39	83	1	151	25	22	28	23	1.99
33951001--33951077	39	2.0	39	100	0	154	18	31	25	24	1.97
33959019--33959208	77	2.5	77	94	0	335	21	32	22	24	1.98
33959019--33959207	38	4.9	39	94	3	319	21	31	22	24	1.98
33962568--33962751	40	4.6	39	75	6	138	26	23	27	22	2.00
33962612--33962760	80	1.9	80	81	2	183	22	24	30	22	1.99
33962608--33962789	80	2.3	81	77	4	181	23	24	29	22	1.99
33972996--33973045	21	2.4	21	100	0	100	22	28	14	36	1.92
33974851--33974964	33	3.5	33	82	2	140	32	23	12	31	1.92
33981323--33981433	43	2.6	42	77	8	116	26	19	26	27	1.99
33982939--33982985	22	2.1	22	100	0	94	36	0	17	46	1.48
33987640--33987709	28	2.5	28	90	4	106	32	27	12	27	1.93
33988267--33988294	2	14.0	2	100	0	56	50	0	0	50	1.00
33991686--33991737	27	1.9	27	96	0	95	40	15	1	42	1.58
33991755--33991807	26	2.0	26	100	0	106	54	18	0	26	1.44
33991817--33991861	23	2.0	23	86	0	63	66	15	0	17	1.25
33991903--33991986	41	2.0	41	100	0	168	38	11	4	45	1.62
33991971--33992014	18	2.4	18	92	3	70	0	27	0	72	0.85
33991974--33992025	5	10.8	5	86	12	56	0	32	0	67	0.91
33992123--33992203	27	3.0	27	81	0	90	16	43	14	25	1.86
34016427--34016472	23	2.0	24	82	4	58	60	28	4	6	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34049306--34049404	28	3.5	28	81	4	101	28	14	27	30	1.95
34051607--34051676	27	2.5	28	95	2	124	28	14	27	30	1.95
34051607--34051688	27	3.0	27	85	8	78	29	15	24	30	1.96
34059413--34059482	27	2.5	28	95	2	124	28	14	27	30	1.95
34059413--34059494	27	3.0	27	85	8	78	29	15	24	30	1.96
34066549--34066583	15	2.2	16	90	10	54	11	20	17	51	1.75
34066549--34066597	14	3.2	15	85	8	55	10	18	16	55	1.69
34071254--34071401	40	3.7	40	88	1	190	24	22	29	23	1.99
34071254--34071421	80	2.1	80	82	3	196	23	22	28	25	1.99
34078398--34078645	40	6.2	40	87	0	298	25	22	26	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325