Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  299  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91445315--91445390
2
38.5
2
72
7
57
0
60
2
36
1.11
91445321--91445386
14
4.7
14
80
12
73
0
62
3
34
1.11
91445319--91445390
24
3.2
22
79
9
74
0
61
2
36
1.11
91457652--91457748
33
2.9
33
95
0
167
28
41
9
20
1.83
91462508--91462547
20
2.0
20
85
0
53
30
7
20
42
1.79
91464451--91464501
13
3.6
13
78
17
57
49
0
1
49
1.12
91474913--91474965
16
3.3
16
76
10
63
50
1
32
15
1.54
91477289--91477340
25
2.2
24
86
13
72
30
0
5
63
1.18
91477610--91477644
14
2.5
14
95
0
61
34
5
11
48
1.63
91478726--91478775
16
3.1
16
77
13
57
18
22
12
48
1.80
91480155--91480215
27
2.3
27
88
0
86
26
11
34
27
1.91
91481663--91481725
25
2.5
25
92
0
108
23
25
14
36
1.93
91481663--91481791
50
2.6
50
80
3
136
20
27
17
34
1.95
91481718--91481889
49
3.5
48
75
5
148
19
27
19
33
1.96
91487456--91487665
40
5.2
40
87
2
305
25
24
28
21
1.99
91495591--91495800
40
5.2
40
87
2
305
25
24
28
21
1.99
91501208--91501259
24
2.2
24
85
0
68
34
5
5
53
1.49
91503558--91503640
28
2.9
28
70
5
67
25
15
9
49
1.75
91503898--91503942
20
2.2
21
88
4
65
68
6
4
20
1.29
91504650--91504722
23
3.2
21
79
11
67
52
2
0
45
1.15
91516891--91516921
2
16.0
2
93
6
55
51
0
0
48
1.00
91527140--91527172
14
2.3
15
89
5
50
63
6
0
30
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91533326--91533409
42
2.0
42
100
0
168
38
21
0
40
1.53
91559085--91559165
42
1.9
42
92
0
135
49
13
4
32
1.63
91559193--91559236
19
2.4
18
88
7
70
43
13
2
40
1.57
91563059--91563102
19
2.4
18
88
7
70
43
13
2
40
1.57
91563846--91563885
21
1.9
21
84
0
53
57
2
17
22
1.52
91570789--91570838
23
2.3
22
81
18
61
62
0
2
36
1.07
91570806--91570830
10
2.5
10
100
0
50
56
0
0
44
0.99
91570824--91570861
18
2.0
20
85
10
53
60
0
0
39
0.97
91570965--91570998
5
6.6
5
86
6
50
20
0
0
79
0.73
91570965--91571009
16
2.9
16
86
3
56
24
2
0
73
0.95
91570998--91571026
12
2.3
13
94
5
51
41
6
0
51
1.28
91580234--91580372
62
2.2
63
77
8
149
47
9
3
39
1.53
91584644--91584684
21
2.0
21
90
0
64
41
14
9
34
1.79
91588514--91588600
24
3.6
24
78
3
77
35
5
41
17
1.73
91590699--91590776
34
2.3
35
82
8
90
28
1
24
46
1.61
91590813--91590881
33
2.1
33
89
5
104
37
0
17
44
1.49
91590833--91590918
42
2.1
40
87
8
120
36
0
22
41
1.54
91594758--91594800
18
2.4
18
88
0
68
44
9
27
18
1.80
91595385--91595413
7
4.3
7
95
4
51
62
10
0
27
1.28
91596362--91596400
20
1.9
21
84
5
53
66
2
2
28
1.18
91596377--91596460
18
4.7
18
65
24
52
64
3
2
29
1.23
91596353--91596464
54
2.1
54
93
0
188
62
3
2
31
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91596602--91596662
21
2.9
21
82
0
59
40
3
24
31
1.71
91602760--91602822
30
2.1
30
85
5
83
28
11
7
52
1.65
91604482--91604581
30
3.3
30
88
5
157
40
32
13
15
1.85
91605935--91606053
21
6.0
20
68
18
61
36
5
0
58
1.20
91606022--91606125
27
3.8
26
73
14
86
35
5
2
55
1.39
91607407--91607466
26
2.4
24
83
8
75
68
3
0
28
1.05
91607437--91607495
21
2.8
22
85
7
70
69
6
0
23
1.12
91610330--91610403
37
2.0
37
94
0
130
20
14
20
44
1.86
91611501--91611541
19
2.1
20
90
4
66
26
0
0
73
0.84
91613850--91614089
128
1.9
129
91
0
392
44
6
12
37
1.68
91615054--91615086
15
2.3
15
89
5
50
54
3
0
42
1.15
91617118--91617166
22
2.2
22
77
0
53
61
2
12
24
1.42
91620314--91620351
2
19.5
2
84
15
53
47
2
0
50
1.15
91620317--91620355
19
2.1
19
100
0
78
48
5
0
46
1.24
91622282--91622307
6
4.3
6
100
0
52
15
34
0
50
1.45
91625694--91625722
2
14.5
2
100
0
58
51
0
0
48
1.00
91626695--91626789
40
2.4
40
84
3
122
37
36
12
12
1.82
91629558--91629583
11
2.4
11
100
0
52
38
7
7
46
1.61
91632158--91632204
18
2.6
18
81
18
62
23
0
2
74
0.93
91632158--91632204
19
2.6
19
83
16
64
23
0
2
74
0.93
91635158--91635195
18
2.1
19
85
5
51
57
2
0
39
1.12
91641541--91641643
40
2.6
40
77
0
125
33
22
18
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91642943--91642973
16
1.9
16
93
0
53
9
6
6
77
1.12
91642983--91643016
2
17.0
2
100
0
68
50
0
0
50
1.00
91643818--91643866
25
2.0
25
88
8
73
18
4
8
69
1.30
91643823--91643872
25
2.0
24
84
3
64
20
4
8
68
1.32
91644423--91644500
29
2.7
30
76
13
74
24
14
0
61
1.33
91644658--91644698
3
13.7
3
89
0
64
34
4
0
60
1.18
91647199--91647274
7
10.9
7
71
5
55
40
35
2
21
1.67
91647195--91647268
21
3.5
21
80
14
89
41
33
2
21
1.67
91647917--91648385
257
1.8
258
89
1
735
26
17
20
35
1.95
91648627--91648686
27
2.2
27
82
8
68
16
38
21
23
1.93
91653216--91653254
20
2.0
19
85
5
51
41
10
15
33
1.81
91660092--91660148
24
2.2
26
85
14
75
22
22
12
42
1.87
91663148--91663221
26
2.9
25
78
8
78
79
1
12
6
0.98
91663135--91663215
16
5.2
14
75
16
63
80
1
9
8
0.97
91663135--91663215
15
5.2
15
75
19
69
80
1
9
8
0.97
91663175--91663215
16
2.6
16
92
3
66
82
0
12
4
0.81
91669308--91669371
32
2.0
32
100
0
128
31
12
12
43
1.80
91669441--91669471
2
15.5
2
100
0
62
48
0
0
51
1.00
91682945--91683273
131
2.5
130
87
2
441
28
17
19
34
1.94
91694714--91694951
88
2.7
88
86
1
262
28
21
22
27
1.99
91694584--91694824
133
1.8
133
89
1
385
27
20
24
28
1.99
91694584--91694877
133
2.2
133
85
1
383
27
19
24
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91694762--91694902
43
3.2
43
65
7
113
29
23
19
27
1.98
91697226--91697255
2
15.0
2
100
0
60
50
0
0
50
1.00
91697310--91697340
14
2.2
14
94
0
53
22
16
6
54
1.64
91697723--91698001
131
2.2
131
89
2
422
27
16
19
36
1.93
91698632--91698665
13
2.6
13
95
0
59
82
0
17
0
0.67
91700549--91700575
14
1.9
14
100
0
54
74
0
0
25
0.83
91700548--91700582
17
2.1
16
89
5
52
77
0
0
22
0.78
91702693--91702833
27
5.2
27
83
11
182
19
23
22
34
1.96
91702693--91702833
54
2.6
54
91
5
223
19
23
22
34
1.96
91702706--91702851
27
5.4
26
74
22
106
21
23
19
34
1.96
91702693--91702851
81
2.0
80
83
10
200
20
23
21
34
1.96
91706186--91706228
23
1.9
22
85
4
59
65
4
18
11
1.42
91711239--91711284
20
2.3
19
85
14
58
30
4
2
63
1.26
91711239--91711284
19
2.3
18
85
14
56
30
4
2
63
1.26
91711398--91711466
13
4.8
15
73
21
67
33
2
0
63
1.09
91711399--91711507
38
2.9
38
80
10
91
32
3
0
63
1.18
91711398--91711526
57
2.2
61
80
15
157
31
4
1
62
1.25
91711418--91711507
19
4.8
18
71
21
69
32
3
1
63
1.18
91715312--91715341
14
2.1
14
93
0
51
36
6
10
46
1.64
91715361--91715397
15
2.5
16
87
12
53
21
24
10
43
1.84
91715361--91715410
15
3.5
15
79
15
52
20
24
14
42
1.88
91717213--91717252
19
2.0
22
85
14
59
32
47
2
17
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91717314--91717455
27
5.3
26
88
4
158
35
22
23
18
1.95
91717314--91717453
54
2.6
55
87
2
185
35
22
23
18
1.95
91717556--91717633
28
2.8
28
88
0
102
32
12
20
34
1.90
91719075--91719184
26
4.2
26
97
0
184
36
24
5
33
1.79
91726593--91727350
204
3.7
204
90
0
1138
31
18
20
29
1.96
91728986--91729031
20
2.3
19
85
14
58
30
4
2
63
1.26
91728986--91729031
19
2.3
18
85
14
56
30
4
2
63
1.26
91729145--91729213
13
4.8
15
73
21
67
33
2
0
63
1.09
91729309--91729353
22
2.0
22
83
8
56
26
6
4
62
1.39
91732303--91732351
2
24.5
2
100
0
98
48
0
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325