genome.fa.s4.2.7.7.80.10.50.1000.298.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  298  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91204278--91204304	14	1.9	14	100	0	54	59	7	0	33	1.25
91209913--91209957	22	2.0	22	91	0	72	28	26	13	31	1.94
91210602--91210647	10	4.4	11	75	8	51	80	8	2	8	0.99
91210602--91210647	21	2.2	21	84	0	56	80	8	2	8	0.99
91212975--91213087	53	2.2	50	90	6	172	74	16	4	4	1.15
91212975--91213087	18	6.5	17	69	17	81	74	16	4	4	1.15
91213292--91213330	17	2.3	17	86	8	53	17	10	0	71	1.12
91213519--91213575	29	2.0	29	82	6	71	22	10	7	59	1.54
91213824--91213853	11	2.7	11	89	0	51	40	0	0	60	0.97
91224313--91225610	75	16.4	75	73	16	756	30	16	19	33	1.94
91224534--91225085	78	7.1	72	74	15	410	30	16	19	34	1.94
91224313--91225638	159	8.4	152	72	15	804	30	16	19	33	1.94
91224696--91225336	253	2.6	246	81	8	717	30	16	19	34	1.94
91225176--91225610	145	2.9	147	85	7	536	32	15	19	32	1.93
91224309--91225608	556	2.4	540	82	8	1586	30	16	19	33	1.94
91225195--91225635	74	5.8	78	81	8	431	32	15	20	31	1.93
91226369--91226434	16	4.2	16	69	11	64	63	28	3	4	1.29
91226368--91226477	51	2.2	49	88	6	161	68	24	3	3	1.22
91226680--91226718	17	2.3	17	86	8	53	17	10	0	71	1.12
91226769--91226818	12	3.8	13	78	14	50	72	4	0	24	1.02
91226945--91227001	29	2.0	29	82	6	71	22	10	7	59	1.54
91227246--91227275	11	2.7	11	89	0	51	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91229078--91229134	24	2.4	25	91	5	91	42	12	19	26	1.86
91230946--91231089	43	3.3	43	88	0	198	36	22	18	22	1.95
91231381--91231428	21	2.3	21	92	0	87	2	58	16	22	1.49
91236964--91237130	9	17.6	9	76	10	154	31	0	21	46	1.56
91236968--91237130	39	4.2	40	86	9	168	30	0	21	47	1.56
91236979--91237118	39	3.4	44	87	10	183	30	0	22	45	1.58
91236964--91237130	57	2.9	57	81	7	196	31	0	21	46	1.56
91236964--91237119	48	3.2	48	80	3	188	31	0	22	45	1.57
91237685--91237734	23	2.2	23	96	0	91	34	18	16	32	1.92
91239814--91239860	20	2.3	20	82	7	51	59	12	6	21	1.55
91240193--91240230	19	2.0	19	100	0	76	21	26	31	21	1.98
91240248--91240290	20	2.2	20	87	4	61	32	2	37	27	1.70
91241341--91241377	15	2.5	15	91	4	58	27	2	24	45	1.66
91241550--91241605	29	1.9	29	96	0	103	19	7	37	35	1.79
91242138--91242295	41	3.9	41	85	3	151	23	23	20	32	1.98
91242184--91242296	41	2.8	40	91	2	172	21	22	20	36	1.95
91251252--91251440	35	5.0	39	69	19	107	25	21	20	32	1.97
91251281--91251465	35	5.0	34	68	23	106	24	20	23	31	1.98
91251237--91251465	75	3.1	74	87	2	307	26	20	20	31	1.98
91257486--91257674	35	5.0	39	69	14	112	25	20	20	33	1.97
91257464--91257699	75	3.1	74	88	2	330	25	20	22	31	1.98
91257515--91257646	35	3.6	35	74	13	122	24	19	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91257548--91257693	40	3.8	39	72	15	133	23	19	22	33	1.97
91259563--91259624	31	2.0	31	87	0	88	38	22	8	30	1.83
91261604--91261777	51	3.4	51	75	5	145	31	26	16	25	1.97
91264727--91264759	16	2.1	16	100	0	66	30	21	24	24	1.99
91264630--91264751	65	1.9	65	84	5	167	33	13	26	26	1.94
91266100--91266152	25	2.1	26	89	3	81	20	11	7	60	1.55
91270357--91270418	29	2.1	29	90	0	97	33	9	11	45	1.73
91271962--91272007	21	2.2	21	84	7	58	63	0	2	34	1.07
91273735--91273814	39	2.1	39	95	0	142	25	18	20	36	1.95
91280814--91280869	26	2.1	28	86	6	80	37	1	1	58	1.19
91281256--91281285	2	15.5	2	93	6	53	0	50	0	50	1.00
91282610--91282644	3	11.7	3	100	0	70	68	0	31	0	0.90
91302378--91302420	6	7.2	6	91	0	68	2	48	30	18	1.60
91312174--91312263	34	2.4	40	75	21	120	51	18	10	20	1.75
91312189--91312293	34	3.1	34	94	0	174	48	18	10	22	1.78
91312725--91312759	5	7.0	5	100	0	70	0	20	0	80	0.72
91313088--91313133	23	2.0	23	82	0	56	15	19	0	65	1.28
91313269--91314159	460	1.9	460	83	4	1161	32	13	17	37	1.88
91314396--91314441	6	7.2	6	81	13	56	67	0	19	13	1.23
91317983--91318246	48	5.5	48	99	0	519	37	18	0	43	1.50
91319851--91319878	5	5.6	5	100	0	56	60	0	0	39	0.97
91325866--91325916	19	2.5	20	84	9	59	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91326323--91326383	26	2.3	26	83	8	79	34	14	8	42	1.76
91327784--91327821	17	2.2	17	100	0	76	36	13	15	34	1.87
91328309--91328373	18	3.6	18	79	6	69	40	16	7	35	1.78
91328701--91328757	24	2.3	24	79	8	62	38	15	0	45	1.47
91330076--91330247	93	1.8	93	96	0	317	27	30	20	20	1.98
91330068--91330243	46	3.8	46	81	10	223	28	29	20	21	1.98
91332270--91332303	17	2.1	15	89	10	50	0	35	0	64	0.94
91332618--91332661	3	14.7	3	100	0	88	65	0	0	34	0.93
91333137--91333193	26	2.2	25	87	9	80	8	7	3	80	1.00
91333137--91333193	13	4.5	13	75	4	53	8	7	3	80	1.00
91333137--91333193	25	2.2	26	84	9	73	8	7	3	80	1.00
91333137--91333189	20	2.8	18	72	10	52	9	5	3	81	0.98
91334184--91334275	3	30.7	3	75	8	80	29	5	4	60	1.38
91336258--91336297	3	13.3	3	100	0	80	65	0	0	35	0.93
91340165--91340199	15	2.3	15	100	0	70	40	0	0	60	0.97
91340347--91340398	13	4.1	13	76	11	54	44	17	0	38	1.49
91346689--91346754	20	3.4	19	84	16	82	36	1	7	54	1.38
91347182--91347291	36	2.9	39	90	8	142	65	1	6	26	1.27
91347201--91347291	36	2.5	36	98	0	173	65	2	5	26	1.25
91347226--91347288	20	3.3	20	65	24	55	63	1	6	28	1.28
91347542--91347597	24	2.3	24	84	6	69	23	1	5	69	1.18
91347870--91348133	142	1.8	144	82	4	336	35	17	21	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91350772--91350840	21	3.3	19	72	18	57	42	2	0	55	1.15
91350793--91350853	30	2.0	30	84	12	81	42	3	0	54	1.17
91350782--91350831	23	2.2	23	79	10	59	42	2	0	56	1.11
91350823--91350879	23	2.7	20	81	10	60	50	3	1	43	1.29
91351964--91352009	23	2.0	24	86	4	67	58	6	0	34	1.24
91362584--91362717	45	3.0	45	80	2	137	32	18	23	25	1.97
91363504--91363741	107	2.3	105	82	5	275	24	7	18	49	1.73
91368262--91368353	21	4.4	21	81	0	94	36	39	8	15	1.78
91374364--91374393	14	2.1	14	100	0	60	30	6	20	43	1.77
91382673--91382710	20	1.9	20	88	0	58	15	34	31	18	1.92
91383237--91383273	13	2.8	13	91	4	56	51	21	0	27	1.48
91388128--91388211	27	3.1	27	80	0	105	33	14	26	26	1.94
91390693--91390784	21	4.4	21	83	2	96	40	38	6	15	1.73
91391842--91391887	17	2.7	17	89	0	65	0	50	0	50	1.00
91391841--91391893	23	2.3	24	90	6	83	0	47	0	52	1.00
91391841--91391890	20	2.5	20	96	0	91	0	48	0	52	1.00
91394638--91394666	2	14.5	2	100	0	58	48	0	0	51	1.00
91398551--91398594	19	2.3	19	88	4	61	29	18	4	47	1.68
91407172--91407256	44	1.9	44	85	0	116	28	20	25	25	1.99
91406847--91407270	227	1.9	225	82	5	541	32	17	20	29	1.96
91420572--91420606	18	1.9	18	88	11	54	45	2	0	51	1.16
91421695--91421739	21	2.1	21	84	8	56	55	22	0	22	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91426800--91426867	29	2.3	30	80	7	77	26	7	4	61	1.41
91427930--91427976	15	3.1	15	71	17	51	51	2	2	44	1.25
91428435--91428478	22	2.0	22	86	4	61	13	11	18	56	1.66
91430240--91430296	24	2.4	24	93	0	96	35	22	15	26	1.94
91432830--91432873	22	2.0	22	86	0	61	52	0	0	47	1.00
91432897--91432938	15	2.7	16	85	14	61	57	0	2	40	1.12
91433481--91433519	14	2.8	14	88	0	51	35	17	5	41	1.72
91433552--91433611	28	2.1	28	100	0	120	35	16	20	28	1.94
91434510--91434540	15	2.1	15	93	0	53	58	22	0	19	1.40
91435663--91435706	21	2.1	21	82	0	52	36	9	11	43	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325