genome.fa.s4.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  154  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47041795--47041942	56	2.6	56	91	0	242	27	16	23	32	1.96
47041795--47041973	56	3.2	56	84	7	222	27	15	24	32	1.95
47043559--47043630	33	2.2	33	94	0	126	40	2	13	43	1.59
47043560--47043614	18	3.2	18	75	15	71	41	1	12	43	1.53
47048813--47048843	15	2.1	15	93	0	53	29	0	6	64	1.18
47063780--47063820	20	2.0	20	95	0	73	34	19	7	39	1.80
47067195--47067265	24	3.0	24	95	0	124	35	1	38	25	1.65
47067195--47067288	48	1.9	48	81	10	111	35	4	37	23	1.75
47069341--47069500	29	5.6	29	90	0	241	25	15	31	27	1.95
47077145--47077238	29	3.2	29	100	0	188	26	14	30	27	1.95
47077145--47077276	29	4.5	28	88	7	167	26	15	32	25	1.95
47077145--47077301	58	2.7	56	86	3	188	25	15	33	25	1.95
47087319--47087481	70	2.3	71	98	1	319	19	28	17	34	1.94
47087319--47087515	70	2.8	69	90	4	247	20	28	17	33	1.95
47094665--47094828	71	2.3	71	96	0	301	18	28	18	34	1.95
47094665--47094862	71	2.8	70	89	3	240	20	28	17	33	1.96
47098048--47098140	24	3.9	24	80	4	89	15	20	21	43	1.88
47098026--47098125	23	4.2	24	74	6	69	16	24	20	40	1.91
47098059--47098140	23	3.4	24	79	5	76	15	18	20	45	1.86
47101737--47101878	69	2.1	67	93	6	243	36	6	25	31	1.81
47107159--47107206	21	2.2	22	85	3	62	29	6	12	52	1.63
47109977--47110063	42	2.1	42	97	0	165	24	13	28	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47111501--47111550	25	2.0	25	96	0	91	66	0	12	22	1.24
47111493--47111555	25	2.4	27	76	17	69	63	0	15	20	1.31
47111505--47111558	25	2.2	25	89	0	81	66	0	11	22	1.22
47114068--47114112	22	2.0	22	100	0	90	35	4	0	60	1.17
47114238--47114277	21	1.9	21	94	0	71	30	5	10	55	1.54
47114850--47114902	22	2.4	22	80	0	61	69	9	9	11	1.36
47115187--47115224	15	2.5	15	86	0	58	60	0	0	39	0.97
47121285--47121699	46	8.8	48	75	14	291	26	18	31	24	1.98
47123206--47123353	56	2.6	56	92	0	260	27	14	24	33	1.95
47124996--47125043	15	3.0	15	72	16	51	39	4	10	45	1.58
47124980--47125048	33	2.1	33	97	0	129	39	2	13	44	1.58
47124980--47125032	18	3.1	18	73	15	67	39	1	13	45	1.54
47130228--47130258	15	2.1	15	93	0	53	29	0	6	64	1.18
47151184--47151291	44	2.5	43	82	8	123	32	25	20	22	1.98
47151134--47151291	43	3.7	43	78	7	160	32	25	19	22	1.98
47154465--47154606	40	3.5	41	77	12	134	22	28	24	24	2.00
47157121--47157167	15	3.1	15	78	0	58	59	14	12	12	1.61
47164278--47164447	43	4.0	42	76	5	135	34	25	16	22	1.95
47167693--47167772	38	2.1	38	88	0	115	22	21	26	30	1.99
47167786--47167852	27	2.5	27	97	2	127	10	25	32	31	1.89
47168189--47168323	45	3.1	45	82	8	118	26	20	26	25	1.99
47167841--47168758	443	2.1	442	96	0	1692	31	12	23	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47169956--47170058	48	2.2	46	81	10	113	25	25	29	20	1.99
47169982--47170084	48	2.1	48	82	7	120	31	22	28	18	1.97
47179904--47179972	19	3.6	19	88	0	111	21	31	31	14	1.93
47185315--47185369	27	2.0	27	82	6	67	18	21	23	36	1.95
47185539--47185601	33	1.9	33	86	0	90	25	22	26	25	2.00
47187979--47188144	40	4.2	40	77	3	149	24	26	21	27	1.99
47194998--47195072	29	2.6	29	85	4	98	28	14	32	25	1.95
47195108--47195139	2	16.5	2	93	6	57	50	0	0	50	1.00
47204773--47204831	30	2.0	30	86	0	82	30	23	8	37	1.85
47213444--47213627	40	4.6	39	75	6	138	26	23	27	22	2.00
47213484--47213672	80	2.4	81	77	4	186	23	24	29	22	1.99
47222642--47222825	40	4.6	39	75	6	138	26	23	27	22	2.00
47222686--47222834	80	1.9	80	81	2	183	22	24	30	22	1.99
47222682--47222853	80	2.1	81	77	5	179	23	24	29	22	1.99
47224698--47224776	35	2.2	36	88	4	115	25	31	21	21	1.98
47224895--47225016	48	2.5	48	86	2	165	31	24	7	36	1.83
47228817--47229124	40	7.8	39	85	6	349	24	30	24	21	1.99
47228814--47229124	80	3.9	80	89	5	411	24	30	23	21	1.99
47228810--47229124	120	2.7	118	86	6	415	24	30	23	21	1.99
47231365--47231445	37	2.2	37	93	0	135	24	32	22	20	1.98
47231564--47231685	48	2.5	48	89	0	181	30	25	7	36	1.83
47236427--47236608	39	4.6	39	89	0	247	23	31	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47236457--47236609	39	3.9	39	92	0	252	23	32	20	23	1.98
47244515--47244696	39	4.6	39	89	0	247	23	31	21	23	1.98
47244545--47244697	39	3.9	39	92	0	252	23	32	20	23	1.98
47248829--47248853	2	12.5	2	100	0	50	52	0	0	48	1.00
47255320--47255476	67	2.3	68	96	1	289	31	14	30	24	1.94
47255320--47255540	67	3.3	64	88	6	203	32	15	29	22	1.95
47258471--47258620	45	3.4	44	75	14	148	24	18	26	31	1.97
47258518--47258643	41	3.0	41	73	10	128	24	17	25	32	1.97
47258473--47258643	86	2.0	85	88	3	254	24	17	25	32	1.97
47260894--47261032	41	3.2	41	67	13	125	24	22	21	31	1.98
47260880--47261079	89	2.3	88	95	0	355	23	24	22	30	1.99
47260880--47261121	89	2.7	89	89	3	319	23	25	21	29	1.99
47261055--47261166	42	2.7	42	82	0	125	28	26	16	27	1.97
47263731--47263892	46	3.5	46	73	17	138	30	19	27	22	1.98
47266429--47266455	13	2.1	13	100	0	54	0	22	48	29	1.51
47272939--47273061	46	2.6	46	90	3	183	28	17	28	25	1.98
47272938--47273097	46	3.4	46	82	12	180	29	18	27	24	1.98
47273665--47273697	13	2.6	13	90	4	50	48	12	0	39	1.40
47276599--47276639	6	6.8	6	94	0	73	82	2	0	14	0.76
47281596--47281740	40	3.6	39	79	3	137	24	24	28	22	2.00
47281601--47281749	80	1.9	80	81	2	183	22	24	30	22	1.99
47281597--47281778	80	2.3	81	77	4	181	23	24	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47284567--47284600	17	2.0	17	94	0	59	26	5	17	50	1.69
47285623--47285686	19	3.3	19	69	26	62	26	6	7	59	1.49
47285607--47285686	39	2.1	39	100	0	160	25	7	10	57	1.57
47290332--47290392	31	1.9	32	90	3	97	40	13	16	29	1.86
47295704--47295757	27	2.0	28	85	3	74	22	27	29	20	1.98
47297000--47297129	43	3.0	43	76	5	129	29	25	17	27	1.98
47299402--47299470	34	2.0	34	100	0	138	31	34	2	30	1.73
47304954--47305116	71	2.3	71	96	1	301	19	28	18	34	1.95
47304954--47305150	71	2.8	70	89	4	240	20	28	17	32	1.96
47307436--47307555	43	2.8	42	79	5	134	30	23	16	29	1.96
47308885--47309032	73	2.0	73	100	0	296	37	21	18	22	1.94
47312464--47312510	18	2.5	20	86	6	71	25	4	2	68	1.19
47313536--47313579	20	2.2	20	84	12	54	40	9	2	47	1.48
47317118--47317143	12	2.2	12	100	0	52	30	0	7	61	1.24
47319351--47319444	49	1.9	48	85	6	127	41	21	20	17	1.90
47320763--47320808	20	2.3	20	96	0	83	10	41	28	19	1.85
47321749--47321911	42	3.9	42	77	10	154	30	23	14	30	1.95
47324995--47325039	21	2.1	21	100	0	90	37	8	17	35	1.81
47326973--47327092	63	1.9	63	91	0	195	32	10	13	43	1.78
47330184--47330402	47	4.7	46	77	7	205	21	31	21	26	1.98
47330184--47330402	94	2.4	91	83	5	253	21	31	21	26	1.98
47334207--47334237	2	15.0	2	93	6	53	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47346850--47347117	47	5.7	47	73	8	206	27	20	30	21	1.98
47346848--47347108	94	2.8	91	77	9	242	27	20	29	21	1.98
47354366--47354633	47	5.7	46	70	14	192	27	20	29	22	1.98
47363308--47363493	40	4.7	40	89	5	261	26	27	21	24	1.99
47376817--47376889	36	2.0	36	97	0	137	35	16	17	30	1.92
47377103--47377172	35	2.0	35	100	0	140	34	11	14	40	1.82
47377493--47377548	20	2.8	21	81	13	64	50	1	17	30	1.57
47377507--47377558	20	2.6	20	90	0	77	46	1	15	36	1.57
47385362--47385427	23	3.0	22	73	8	71	25	21	18	34	1.96
47395531--47395710	40	4.5	40	84	6	204	25	21	26	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325