genome.fa.s4.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  206  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63935080--63935123	21	2.1	21	86	0	61	13	9	0	77	0.99
63949656--63949682	13	2.1	13	100	0	54	29	11	22	37	1.89
63951521--63951643	40	3.1	40	82	2	149	28	24	25	21	1.99
63951489--63951673	80	2.3	80	78	12	200	25	23	27	22	2.00
63953574--63953838	54	4.9	54	88	0	361	29	21	8	40	1.82
63953574--63953838	27	9.8	27	86	0	323	29	21	8	40	1.82
63953474--63954040	27	20.9	27	77	9	149	35	20	8	35	1.83
63953628--63953966	81	4.2	81	80	5	238	33	20	8	37	1.83
63953832--63953982	81	1.9	81	88	5	234	43	20	7	28	1.80
63954099--63954191	27	3.4	27	88	2	125	35	20	24	19	1.96
63955439--63955495	9	5.9	9	73	15	51	35	8	21	35	1.84
63955437--63955499	20	3.2	20	95	0	117	36	12	19	31	1.89
63955553--63955719	24	7.0	23	86	6	219	29	22	21	26	1.99
63955553--63955719	47	3.5	47	86	4	221	29	22	21	26	1.99
63955553--63955718	71	2.3	71	89	3	253	28	22	21	27	1.99
63955911--63955974	31	2.1	31	87	0	92	37	14	23	25	1.92
63960953--63960989	19	1.9	19	88	0	56	51	8	0	40	1.32
63963744--63963802	29	2.0	29	83	6	75	30	10	8	50	1.66
63964360--63964435	39	1.9	39	91	0	125	59	15	9	15	1.61
63964666--63964758	3	32.3	3	78	8	86	3	30	2	64	1.21
63964674--63964749	11	6.3	12	75	15	59	3	30	1	64	1.20
63964663--63964758	14	6.7	14	80	7	86	3	30	2	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63964712--63964768	22	2.6	22	83	5	62	1	24	1	71	1.04
63966508--63966659	40	3.8	40	77	5	146	27	24	26	21	1.99
63966546--63966675	40	3.2	40	79	2	154	23	23	28	23	2.00
63974500--63974650	40	3.8	40	77	13	141	25	24	27	22	2.00
63977934--63978081	79	1.9	79	83	8	194	27	23	27	21	1.99
63977969--63978097	40	3.2	40	78	3	145	24	23	28	24	1.99
63981404--63981611	40	5.2	40	84	0	218	25	22	25	25	2.00
63981405--63981611	80	2.6	80	83	4	247	25	22	26	25	2.00
63989563--63989770	40	5.2	40	84	0	218	25	22	25	25	2.00
63989564--63989770	80	2.6	80	83	4	247	25	22	26	25	2.00
63992376--63992485	42	2.6	42	75	7	114	25	18	24	31	1.97
63992321--63992493	43	4.0	43	71	11	129	24	16	24	34	1.95
63994182--63994234	7	7.4	7	95	4	97	13	0	0	86	0.56
64002460--64002615	43	3.6	42	74	6	127	31	23	17	26	1.97
64007371--64007443	23	3.2	22	86	9	101	50	6	0	42	1.29
64007615--64007666	22	2.4	22	96	0	95	13	21	11	53	1.70
64013933--64014106	58	3.0	58	100	0	348	25	29	12	32	1.92
64018159--64018188	15	1.9	16	93	6	53	13	0	36	50	1.42
64018270--64018303	16	2.1	17	94	5	61	11	0	35	52	1.38
64018269--64018336	24	2.9	24	75	18	79	16	0	29	54	1.42
64018132--64018734	142	4.1	142	86	6	733	34	1	20	43	1.60
64018797--64019188	126	3.1	126	86	3	515	41	14	16	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64023397--64023428	7	4.6	7	92	0	55	62	9	0	28	1.26
64027012--64027043	9	3.6	9	91	0	55	65	0	0	34	0.93
64027693--64027753	30	2.0	30	93	0	104	9	16	44	29	1.80
64028250--64028281	7	4.6	7	92	0	55	62	9	0	28	1.26
64032224--64032254	9	3.4	9	90	0	53	64	0	0	35	0.94
64032245--64032326	39	2.1	39	82	6	96	46	6	9	37	1.62
64032906--64032966	30	2.0	30	83	0	77	8	19	44	27	1.79
64034165--64034211	21	2.2	21	100	0	94	48	0	4	46	1.21
64036152--64036204	24	2.2	24	86	0	70	50	0	11	37	1.38
64036164--64036209	24	2.0	24	95	4	85	45	0	8	45	1.34
64037238--64037262	9	2.8	9	100	0	50	64	0	12	24	1.27
64042051--64042151	28	3.6	28	93	2	159	30	13	22	32	1.93
64042026--64042152	28	4.5	28	88	3	148	29	14	25	30	1.95
64043713--64043891	48	3.7	48	91	0	277	24	20	29	26	1.99
64043712--64043891	96	1.9	96	92	0	306	24	20	29	26	1.99
64045136--64045171	19	1.9	18	94	5	63	25	25	38	11	1.88
64053437--64053709	48	5.7	48	91	1	397	23	17	31	28	1.97
64053437--64053709	144	1.9	144	90	3	442	23	17	31	28	1.97
64055546--64055617	36	2.0	36	97	0	135	38	23	2	34	1.70
64069907--64070007	28	3.5	29	82	9	118	29	25	14	29	1.95
64072420--64072580	48	3.4	48	97	0	286	31	27	5	36	1.80
64084784--64084873	43	2.1	43	87	0	126	28	11	21	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64091409--64091586	51	3.5	52	86	4	231	26	14	28	29	1.95
64097849--64098026	48	3.7	48	83	0	223	26	17	25	29	1.98
64099422--64099546	43	2.9	41	83	8	144	24	16	25	33	1.96
64102264--64102770	49	10.3	49	91	4	754	34	8	27	29	1.86
64102264--64102759	100	5.0	100	92	3	790	34	8	27	30	1.86
64102264--64102759	149	3.3	149	93	2	822	34	8	27	30	1.86
64115068--64115111	23	1.9	23	86	9	63	36	6	18	38	1.77
64120453--64120483	16	1.9	16	93	0	53	25	3	9	61	1.42
64121465--64121563	27	3.6	27	81	6	110	35	24	23	17	1.95
64123566--64123813	68	3.8	65	76	8	220	32	15	28	23	1.95
64127013--64127112	37	2.7	37	96	0	182	24	33	19	24	1.97
64127256--64127497	48	5.0	48	98	0	457	30	28	6	34	1.82
64139821--64139845	8	3.1	8	100	0	50	52	24	0	24	1.48
64139465--64139936	236	2.0	235	96	0	863	32	25	17	25	1.97
64140216--64140268	26	2.0	25	86	13	72	54	11	0	33	1.36
64141875--64141931	20	3.0	20	80	12	59	73	3	7	15	1.18
64144217--64144488	46	5.9	48	74	15	155	22	29	18	29	1.97
64144219--64144480	139	1.9	140	85	5	370	22	29	18	29	1.97
64146193--64146312	11	11.1	11	74	18	92	57	5	0	35	1.29
64146215--64146270	17	3.4	17	76	19	64	60	1	0	37	1.07
64146202--64146297	20	4.6	20	76	14	79	58	3	1	37	1.21
64146414--64146536	27	5.0	25	70	16	87	55	5	6	32	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64148157--64148286	40	3.2	40	77	13	142	24	26	24	23	2.00
64148173--64148324	40	3.8	40	80	5	155	22	26	24	26	2.00
64148173--64148324	80	1.9	80	83	5	200	22	26	24	26	2.00
64156180--64156347	40	4.2	40	80	7	162	23	26	23	26	2.00
64156196--64156347	80	1.9	80	83	5	200	23	26	23	26	2.00
64158277--64158413	3	45.3	3	69	12	68	56	2	5	34	1.38
64158373--64158422	21	2.4	21	86	3	66	62	0	2	36	1.07
64166966--64167027	30	2.1	30	96	0	115	24	38	20	16	1.92
64170172--64170421	3	83.0	3	75	10	143	60	3	7	29	1.41
64175624--64175648	4	6.2	4	100	0	50	76	0	0	24	0.80
64177998--64178106	45	2.3	46	87	7	150	33	10	29	27	1.89
64183757--64183835	29	2.7	29	86	5	106	27	32	15	24	1.95
64189674--64189776	29	3.6	27	81	5	98	29	33	16	21	1.95
64200345--64200447	29	3.6	27	81	5	98	29	33	16	21	1.95
64205571--64205808	3	77.7	3	71	13	155	59	2	7	31	1.37
64209318--64209380	29	2.2	29	91	2	101	14	26	9	49	1.74
64212546--64212671	40	3.2	39	79	10	132	29	24	24	21	1.99
64212546--64212733	80	2.3	80	78	13	199	26	23	26	22	2.00
64214124--64214275	46	3.3	45	75	15	157	28	28	22	21	1.99
64214151--64214294	46	3.1	44	75	15	132	28	28	20	22	1.99
64214698--64214757	30	2.0	30	90	0	93	30	25	8	36	1.85
64220745--64220897	39	3.9	39	89	0	216	22	31	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64225617--64225650	14	2.2	16	90	10	54	67	0	26	5	1.13
64225616--64225651	16	2.3	17	81	18	51	69	0	25	5	1.10
64230690--64230823	29	4.6	29	83	5	155	27	14	30	26	1.95
64230690--64230821	59	2.3	58	84	4	158	27	15	30	27	1.96
64238746--64238880	29	4.6	29	81	7	148	28	14	30	26	1.95
64238746--64238878	60	2.3	58	82	5	151	27	15	30	27	1.96
64241526--64241555	15	2.0	15	93	0	51	56	6	0	36	1.26
64245648--64245676	15	2.0	15	93	6	51	44	0	0	55	0.99
64246181--64246215	16	2.2	16	89	0	52	28	25	5	40	1.78
64246204--64246249	16	2.9	16	80	0	56	28	21	4	45	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325