Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  320  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96842213--96842271
26
2.2
27
82
8
68
38
0
0
61
0.96
96842213--96842271
27
2.2
26
84
3
73
38
0
0
61
0.96
96842199--96842285
29
3.0
28
78
10
77
37
3
1
57
1.23
96844301--96844340
20
2.0
20
100
0
80
40
35
0
25
1.56
96846704--96846743
20
1.9
20
85
10
53
22
15
12
50
1.77
96849112--96849184
36
2.0
35
82
10
85
24
0
38
36
1.56
96849176--96849230
22
2.5
22
81
0
65
29
0
30
40
1.57
96849159--96849233
28
2.6
28
79
12
80
29
0
36
34
1.58
96849176--96849229
15
3.7
15
78
11
58
27
0
31
40
1.57
96849174--96849258
7
11.6
7
74
8
62
28
0
37
34
1.58
96849635--96849709
26
2.9
27
88
4
109
44
6
4
45
1.48
96849903--96850004
41
2.4
42
87
6
145
37
13
23
25
1.92
96852380--96853265
241
3.7
241
97
0
1682
34
18
14
32
1.91
96853385--96853497
9
12.2
9
75
5
100
46
20
1
31
1.61
96853398--96853510
57
2.0
57
87
0
163
45
23
1
30
1.63
96859550--96859693
43
3.3
43
84
3
200
21
28
21
28
1.99
96863427--96863592
47
3.7
46
82
7
153
26
15
27
30
1.96
96863478--96863677
42
4.7
42
83
6
181
30
15
26
29
1.95
96863509--96863677
42
4.0
42
84
3
198
29
14
26
29
1.95
96867329--96867413
35
2.4
35
82
7
93
35
1
2
61
1.17
96867349--96867416
19
3.7
19
71
15
63
33
1
0
64
1.02
96875257--96875285
12
2.4
12
100
0
58
41
10
0
48
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96880139--96880172
15
2.3
15
90
10
52
88
0
0
11
0.52
96889570--96889611
3
14.3
3
80
5
50
61
2
4
30
1.29
96889984--96890019
3
12.0
3
93
0
63
63
0
2
33
1.08
96891257--96891288
12
2.7
12
95
0
55
18
6
50
25
1.70
96891640--96891727
44
2.0
45
88
2
133
26
26
15
31
1.96
96891656--96891740
44
2.0
42
84
11
111
25
27
15
31
1.95
96891827--96891949
44
2.8
44
91
2
194
27
22
19
30
1.98
96891839--96891975
44
3.2
43
85
6
127
28
21
18
31
1.97
96891965--96892118
68
2.3
68
87
2
211
29
21
22
25
1.99
96892188--96892340
44
3.5
44
72
10
152
17
22
23
35
1.95
96892226--96892549
43
7.5
42
71
10
224
20
20
22
36
1.95
96892169--96892558
87
4.5
86
81
4
460
20
21
22
35
1.96
96892226--96892569
173
2.0
173
88
3
514
21
20
22
36
1.96
96892639--96892832
67
3.0
66
85
4
250
38
12
16
32
1.86
96900013--96900047
18
1.9
18
88
0
52
48
5
0
45
1.26
96903776--96903804
3
9.7
3
100
0
58
34
34
0
31
1.58
96904868--96904924
28
2.0
28
100
0
114
43
10
3
42
1.56
96907877--96907933
19
3.1
19
80
7
55
61
3
1
33
1.23
96907870--96907983
9
12.3
9
70
12
54
59
5
4
30
1.39
96907977--96908035
30
1.9
31
86
6
84
50
5
1
42
1.34
96910095--96910153
9
6.6
9
88
0
91
45
20
8
25
1.79
96910173--96910213
6
6.5
6
83
10
55
17
0
4
78
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96910238--96910262
13
1.9
13
100
0
50
12
0
48
40
1.40
96910239--96910276
18
2.1
18
95
0
67
7
2
47
42
1.46
96910592--96910629
20
2.0
20
89
5
60
68
0
0
31
0.90
96911681--96911720
15
2.5
15
84
8
53
62
0
0
37
0.95
96912380--96912414
2
17.5
2
100
0
70
48
0
0
51
1.00
96913839--96913972
46
3.0
45
81
4
153
34
13
24
27
1.93
96916573--96916683
47
2.4
47
83
6
145
35
22
16
26
1.95
96925166--96925293
47
2.7
47
100
0
256
27
27
22
22
1.99
96925760--96925795
2
18.0
2
100
0
72
50
0
0
50
1.00
96927506--96927532
14
1.9
14
100
0
54
37
25
0
37
1.57
96930129--96930160
6
5.3
6
100
0
64
46
0
18
34
1.49
96930290--96930329
21
1.9
21
84
0
53
55
0
2
42
1.13
96930659--96930820
80
2.0
80
95
0
288
50
9
27
12
1.71
96933500--96933529
15
2.0
15
93
0
51
43
13
6
36
1.70
96933951--96933991
21
2.0
21
95
0
73
39
9
12
39
1.76
96934303--96934381
30
2.6
30
74
11
81
44
2
11
41
1.54
96935683--96935727
21
2.3
19
80
7
54
40
6
0
53
1.27
96936019--96936063
17
2.5
18
82
10
65
66
0
2
31
1.04
96936054--96936078
11
2.3
11
100
0
50
56
0
0
44
0.99
96936815--96936861
18
2.6
18
76
6
51
31
2
0
65
1.04
96936821--96936883
22
3.1
21
80
13
69
30
1
0
68
0.99
96936839--96936889
11
4.6
11
76
7
50
29
1
0
68
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96945382--96945460
39
2.0
39
100
0
158
25
20
26
27
1.99
96945930--96945973
7
6.3
7
94
0
70
13
11
31
43
1.80
96948520--96948949
217
2.0
217
88
1
648
31
20
12
35
1.90
96952214--96952261
21
2.3
22
89
7
73
50
8
0
41
1.33
96960327--96960355
2
14.5
2
100
0
58
48
0
0
51
1.00
96965355--96965399
2
23.0
2
81
4
56
46
2
4
46
1.35
96971617--96971677
31
2.0
31
90
0
95
40
6
14
37
1.72
96975687--96975737
25
2.0
25
85
7
68
31
21
9
37
1.86
96978562--96978593
2
16.0
2
100
0
64
0
50
0
50
1.00
96984007--96984036
14
2.1
14
93
0
51
36
13
26
23
1.92
96989587--96989793
66
3.1
66
95
2
371
24
27
22
25
2.00
96993446--96993494
25
2.0
25
100
0
98
51
8
12
28
1.68
97002286--97002332
18
2.6
18
86
0
67
29
42
6
21
1.77
97018353--97018428
33
2.3
32
84
4
89
59
7
11
21
1.57
97026757--97026832
31
2.5
31
97
0
143
47
18
7
26
1.76
97027289--97027323
5
7.0
5
100
0
70
40
0
20
40
1.52
97028828--97028888
29
2.1
29
87
0
86
37
9
1
50
1.45
97028920--97028958
18
2.2
18
90
9
62
46
5
2
46
1.38
97033092--97033167
22
3.7
21
75
15
59
40
17
5
36
1.72
97033128--97033196
17
3.8
19
88
11
117
36
14
11
37
1.83
97033560--97033827
45
5.9
45
78
5
290
25
26
16
31
1.96
97033568--97033827
89
2.9
89
83
4
281
25
27
16
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97033770--97034061
78
3.7
78
86
1
388
26
23
17
32
1.97
97033770--97034061
156
1.9
156
90
0
467
26
23
17
32
1.97
97034022--97034104
43
1.9
43
82
7
105
25
21
16
36
1.94
97034287--97034847
87
6.4
87
91
0
897
31
27
14
26
1.95
97034359--97034980
44
14.2
45
65
18
133
30
27
15
26
1.96
97034812--97035110
44
6.8
44
77
8
279
28
27
15
29
1.96
97034812--97035110
88
3.4
86
77
9
309
28
27
15
29
1.96
97034707--97035110
219
1.8
220
86
2
578
28
27
15
27
1.96
97036079--97036135
14
4.2
13
84
6
78
3
8
1
85
0.77
97039464--97039589
42
3.0
42
98
0
243
22
21
18
38
1.94
97041915--97041972
22
2.7
21
76
10
53
41
17
3
37
1.66
97041951--97042095
19
7.9
19
88
9
230
36
14
10
38
1.80
97041951--97042095
54
2.7
54
96
1
263
36
14
10
38
1.80
97041944--97042096
73
2.1
71
90
8
247
35
15
9
39
1.80
97042431--97042461
15
2.0
16
93
6
55
51
0
9
38
1.35
97047960--97048015
29
1.9
29
82
13
71
50
0
0
50
1.00
97048024--97048285
127
2.1
127
84
5
336
46
8
4
40
1.54
97048764--97048801
19
2.0
19
94
0
67
39
0
2
57
1.12
97051391--97051442
9
5.4
9
77
18
52
25
1
0
73
0.94
97062747--97063006
35
7.4
35
82
3
283
40
15
16
26
1.89
97062753--97063006
70
3.6
70
81
2
312
41
15
16
26
1.88
97062772--97063006
105
2.2
105
89
0
353
40
15
17
27
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97069872--97069908
14
2.5
14
91
8
56
21
16
5
56
1.59
97069871--97069908
15
2.4
16
86
4
60
21
15
5
57
1.57
97070240--97070286
23
2.0
23
91
0
76
38
29
17
14
1.89
97079807--97079836
7
4.3
7
91
0
51
20
0
40
40
1.52
97084069--97084131
32
2.0
32
87
0
90
41
12
19
26
1.87
97106516--97106557
5
8.4
5
94
0
75
38
59
0
2
1.10
97112272--97112303
15
2.1
15
100
0
64
31
25
9
34
1.87
97120761--97120932
93
1.8
93
96
0
317
27
29
21
20
1.98
97120754--97120929
46
3.8
46
79
12
216
28
29
21
20
1.98
97128339--97128510
93
1.8
93
96
0
317
27
29
21
20
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325