Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  124  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37298358--37298382
13
1.9
13
100
0
50
24
0
4
72
1.02
37299193--37299223
2
15.5
2
100
0
62
51
0
0
48
1.00
37303070--37303139
27
2.6
27
95
2
122
30
27
14
28
1.95
37310892--37310961
27
2.6
27
95
2
122
30
27
14
28
1.95
37313570--37313699
49
2.7
49
82
7
147
21
23
20
33
1.97
37313734--37313840
46
2.3
46
79
3
117
22
29
17
29
1.97
37317050--37317132
43
1.9
43
92
0
139
21
20
32
25
1.98
37319781--37320122
47
7.3
47
94
0
576
32
9
28
28
1.88
37322123--37322339
38
5.7
38
89
0
317
21
22
23
32
1.98
37332177--37332368
50
3.9
48
78
6
177
26
17
25
31
1.97
37335267--37335299
13
2.6
13
90
4
50
48
12
0
39
1.40
37335792--37335818
13
2.1
13
100
0
54
22
22
14
40
1.90
37338206--37338291
16
5.5
15
80
13
75
76
0
6
16
0.99
37338238--37338293
5
10.8
5
78
21
62
78
0
3
17
0.89
37338206--37338294
31
2.8
31
81
11
110
77
0
6
15
0.97
37338231--37338296
6
11.2
6
73
15
57
78
0
4
16
0.90
37345844--37346015
93
1.8
93
93
0
299
20
20
29
28
1.98
37345848--37346022
46
3.8
46
78
13
187
20
20
29
29
1.98
37350158--37350299
40
3.5
40
83
1
124
27
23
26
21
1.99
37350158--37350309
80
1.9
80
83
5
200
26
23
26
23
2.00
37350196--37350325
40
3.3
39
78
11
147
23
23
26
25
2.00
37356653--37356826
46
3.8
45
78
13
203
20
21
29
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37356650--37356819
91
1.9
92
94
1
306
20
21
29
28
1.98
37369121--37369392
49
5.8
49
75
10
178
24
29
19
27
1.98
37369121--37369387
93
2.8
93
78
7
254
23
29
19
27
1.98
37384409--37384458
21
2.4
21
89
0
82
32
38
18
12
1.87
37385964--37386013
10
5.0
10
81
13
59
22
8
2
68
1.26
37386629--37386663
13
2.7
13
100
0
70
40
17
31
11
1.85
37392395--37392440
6
7.5
6
79
20
51
21
2
0
76
0.90
37393185--37393374
95
2.0
97
85
4
260
29
13
25
32
1.93
37393386--37393424
19
2.1
18
86
13
53
82
0
17
0
0.68
37394005--37394053
24
2.0
25
84
11
66
26
0
12
61
1.31
37394043--37394094
10
5.1
10
75
11
52
25
1
1
71
1.07
37394007--37394062
24
2.3
23
82
17
60
25
0
8
66
1.21
37394043--37394074
16
2.0
16
93
0
55
28
0
0
71
0.86
37398366--37398398
15
2.2
16
89
10
52
60
0
3
36
1.12
37399366--37399752
193
2.0
194
88
2
582
32
17
17
33
1.93
37399977--37400003
3
9.0
3
100
0
54
33
0
0
66
0.92
37400566--37400643
39
2.0
38
92
2
129
39
15
3
41
1.65
37401081--37401109
14
2.1
14
100
0
58
13
27
13
44
1.82
37404751--37404935
57
3.2
56
79
15
198
54
1
1
43
1.14
37404791--37404951
61
2.6
61
82
8
164
59
1
0
39
1.06
37404900--37404961
28
2.3
27
83
5
72
61
1
3
33
1.22
37405421--37405485
20
3.2
19
74
10
58
49
15
12
23
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37405430--37405489
20
3.0
20
82
2
75
51
15
13
20
1.75
37405475--37405502
13
2.2
13
100
0
56
50
14
7
28
1.69
37407626--37407694
31
2.3
30
80
9
77
40
7
10
42
1.66
37407939--37407995
27
2.1
28
83
9
73
47
8
10
33
1.69
37413770--37413807
2
19.0
2
100
0
76
50
0
0
50
1.00
37416124--37416274
43
3.5
42
76
6
117
25
25
20
28
1.99
37416507--37416598
46
2.0
46
97
0
175
34
16
6
42
1.74
37433878--37434141
40
6.6
39
82
4
289
25
21
28
25
1.99
37433878--37434139
79
3.3
80
89
5
365
25
21
27
25
1.99
37433881--37434141
119
2.2
119
83
8
334
25
21
28
25
1.99
37433878--37434174
79
3.7
78
85
5
316
25
20
27
25
1.99
37439010--37439184
46
3.8
46
77
15
180
29
29
20
21
1.98
37439017--37439189
93
1.9
93
91
0
283
28
30
20
21
1.98
37446007--37446077
34
2.1
34
100
0
142
45
26
11
16
1.82
37450576--37450617
18
2.2
20
83
8
52
50
11
14
23
1.76
37460378--37460410
17
2.0
17
94
5
59
36
15
0
48
1.45
37460691--37461055
46
8.0
46
90
1
464
21
23
15
40
1.90
37460691--37461045
183
1.9
184
86
1
507
20
23
15
40
1.91
37463992--37464046
28
2.0
28
96
0
101
32
21
16
29
1.95
37465595--37465662
29
2.3
29
82
10
84
29
7
4
58
1.45
37467393--37467417
11
2.3
11
100
0
50
44
8
0
48
1.32
37477781--37477848
28
2.4
28
90
4
102
32
26
11
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37482721--37482761
5
8.0
5
97
2
73
60
0
0
39
0.96
37483401--37483514
58
2.0
58
91
0
183
29
24
11
34
1.90
37486642--37486754
46
2.5
46
100
0
226
37
14
23
24
1.92
37486718--37486786
32
2.2
32
97
0
129
39
17
21
21
1.93
37486672--37486832
78
2.1
78
97
0
304
37
15
23
22
1.93
37486750--37486993
46
5.3
46
90
2
348
40
14
23
20
1.90
37486642--37486983
124
2.6
131
87
7
448
39
14
23
22
1.90
37498342--37498384
22
2.0
22
85
0
59
20
13
9
55
1.66
37498597--37498627
11
2.8
11
90
0
53
67
0
0
32
0.91
37501375--37501449
37
2.0
37
92
0
123
26
10
22
40
1.87
37516304--37516484
46
3.9
46
81
9
233
20
21
29
27
1.98
37516306--37516476
93
1.8
93
96
0
315
20
22
29
27
1.98
37519437--37519505
15
4.6
15
83
0
84
11
17
13
57
1.64
37519428--37519515
30
3.0
30
81
8
99
10
17
15
56
1.66
37521893--37522073
46
3.9
46
81
9
233
20
21
29
27
1.98
37521895--37522065
93
1.8
93
96
0
315
20
22
29
27
1.98
37530059--37530647
47
12.3
47
90
2
854
31
8
31
28
1.87
37530059--37530647
190
3.1
190
91
1
912
31
8
31
28
1.87
37530450--37530525
22
3.3
22
66
16
64
30
10
32
26
1.90
37530472--37530550
25
3.3
25
66
16
76
32
5
30
31
1.79
37535598--37535717
58
2.1
58
100
0
240
13
12
21
52
1.73
37537640--37537670
14
2.2
14
100
0
62
61
12
0
25
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37538375--37538416
6
7.0
6
88
0
57
50
42
0
7
1.30
37538375--37538418
12
3.7
12
90
0
70
47
43
0
9
1.35
37538375--37538416
18
2.3
18
91
0
75
50
42
0
7
1.30
37540373--37540503
64
2.0
65
98
1
255
26
21
13
38
1.91
37543665--37543710
18
2.5
19
82
6
60
43
2
2
52
1.25
37543775--37543805
7
4.4
7
91
0
53
25
3
0
70
1.02
37544227--37544259
12
2.6
13
85
9
50
54
0
0
45
0.99
37546111--37546139
7
4.1
7
100
0
58
17
55
0
27
1.42
37547985--37548046
26
2.4
26
83
5
81
25
12
20
40
1.89
37552823--37553079
46
5.5
46
77
12
240
23
29
17
29
1.97
37552822--37553079
92
2.8
93
82
12
282
23
29
17
29
1.97
37552869--37553082
94
2.3
91
85
10
276
23
29
18
28
1.98
37558446--37558499
26
2.1
26
100
0
108
50
11
11
27
1.72
37561030--37561299
46
5.8
45
73
11
149
23
26
20
30
1.98
37568027--37568340
46
6.7
46
75
12
239
24
28
17
29
1.97
37569164--37569237
29
2.6
29
86
0
94
29
25
5
39
1.78
37569285--37569349
29
2.2
29
83
5
78
29
21
9
40
1.84
37571170--37571390
46
4.7
45
76
11
189
27
17
29
25
1.97
37571171--37571390
94
2.3
94
84
9
263
27
17
30
25
1.97
37580327--37580386
26
2.3
26
82
0
75
38
21
21
18
1.94
37581430--37581457
13
2.2
13
100
0
56
21
14
0
64
1.29
37590492--37590551
30
2.0
30
100
0
120
43
20
10
26
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37596306--37596454
80
1.9
80
81
2
183
22
30
24
22
1.99
37596347--37596454
40
2.7
38
85
8
128
21
29
25
23
1.99
37604422--37604570
80
1.9
80
81
2
183
22
30
24
22
1.99
37604463--37604570
40
2.7
38
85
8
128
21
29
25
23
1.99
37608725--37608902
39
4.5
39
90
3
243
24
21
29
24
1.99
37616762--37616938
39
4.5
39
91
2
241
24
21
29
24
1.99
37616762--37616938
79
2.3
78
88
4
250
24
21
29
24
1.99
37622076--37622686
70
8.7
70
79
2
494
29
25
18
26
1.98
37622114--37622689
210
2.7
208
78
4
575
29
24
18
26
1.98
37626227--37626600
39
9.6
39
84
2
457
44
19
4
31
1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325