genome.fa.s4.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  110  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32639648--32639795	39	3.8	40	91	4	223	25	18	28	27	1.98
32639648--32639795	79	1.9	77	88	2	224	25	18	28	27	1.98
32640530--32640670	40	3.5	40	82	8	153	26	23	24	24	2.00
32643396--32644219	47	17.3	47	89	2	1166	31	9	30	28	1.88
32643396--32644218	190	4.3	188	92	2	1245	31	9	30	28	1.88
32647289--32647452	46	3.6	45	82	10	172	26	29	16	26	1.97
32647331--32647501	46	3.7	46	75	18	140	25	29	19	26	1.98
32652958--32653028	28	2.5	28	84	4	81	28	33	14	23	1.94
32653265--32653304	18	2.2	18	86	8	55	42	17	0	40	1.49
32656410--32656584	48	3.7	47	78	7	158	22	29	20	27	1.99
32656410--32656631	48	4.7	45	77	7	147	24	31	19	25	1.98
32656620--32656705	37	2.4	37	84	2	120	25	30	19	24	1.98
32659311--32659456	28	4.8	28	69	18	85	32	29	11	26	1.91
32659369--32659533	40	4.4	40	70	17	156	33	27	15	23	1.95
32659341--32659490	68	2.2	68	90	0	246	33	28	14	24	1.94
32677423--32677604	49	3.7	49	80	2	220	26	18	25	29	1.98
32683691--32683740	24	2.1	24	100	0	100	30	12	4	54	1.55
32708816--32709027	39	5.4	39	91	2	336	25	30	19	25	1.98
32717826--32717993	35	4.6	35	85	7	185	33	23	10	32	1.89
32717821--32717993	75	2.4	73	83	9	210	33	23	10	32	1.89
32724188--32724309	26	4.7	26	80	8	122	40	22	8	28	1.83
32724209--32724340	27	5.0	26	79	7	140	39	21	9	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32724263--32724338	26	2.9	27	80	7	84	39	22	9	28	1.85
32724188--32724343	53	2.9	53	76	10	156	39	22	8	28	1.84
32724332--32724580	27	9.2	27	86	3	297	31	21	6	40	1.79
32724295--32724543	81	3.1	80	85	4	207	32	20	8	38	1.81
32724332--32724580	81	3.1	81	87	5	360	31	21	6	40	1.79
32725085--32725164	31	2.6	31	80	7	99	17	18	13	50	1.79
32725085--32725184	6	16.3	6	71	15	71	19	18	13	50	1.78
32725139--32725200	24	2.6	24	82	7	72	20	14	12	51	1.75
32727144--32727311	53	3.2	52	76	9	137	40	23	7	28	1.82
32727150--32727302	26	5.8	26	79	8	132	39	23	8	28	1.84
32727228--32727316	26	3.3	26	76	21	69	44	21	6	26	1.77
32727294--32727433	54	2.6	54	86	1	190	31	22	5	40	1.78
32727294--32727433	27	5.1	27	86	0	172	31	22	5	40	1.78
32727941--32728020	31	2.6	31	82	7	108	16	18	15	50	1.79
32727941--32728040	6	16.3	6	74	15	89	17	18	15	50	1.79
32730016--32730138	27	4.6	27	80	9	119	38	24	9	27	1.87
32730016--32730165	27	5.6	25	70	11	93	38	24	10	27	1.87
32730008--32730167	53	3.0	53	76	7	162	37	24	10	28	1.87
32730124--32730409	81	3.5	79	78	7	270	32	19	7	40	1.79
32730161--32730409	27	9.2	27	85	2	275	31	19	6	42	1.78
32730736--32730795	27	2.3	27	85	2	77	21	23	20	35	1.96
32730914--32730986	31	2.4	31	81	4	85	16	15	15	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32732973--32733095	27	4.6	27	81	9	128	39	24	8	27	1.85
32732973--32733122	27	5.6	25	72	11	102	39	24	9	27	1.85
32732965--32733124	53	3.0	53	78	7	171	38	24	9	28	1.86
32733118--32733248	27	4.8	27	83	0	145	32	21	7	38	1.82
32733810--32733848	19	2.0	20	85	14	55	51	23	10	15	1.73
32736732--32736832	28	3.5	30	82	6	118	29	14	26	28	1.95
32736761--32736836	29	2.7	28	76	13	75	30	14	26	28	1.95
32740465--32740492	14	2.0	14	100	0	56	21	7	21	50	1.72
32740611--32740749	42	3.3	42	86	0	206	35	25	17	20	1.94
32742224--32742330	53	2.0	53	85	0	142	24	26	14	35	1.93
32748413--32748482	29	2.6	29	86	8	103	25	32	15	25	1.95
32756236--32756309	29	2.7	28	85	8	91	24	32	16	27	1.96
32764716--32764788	27	2.7	27	89	6	112	21	32	17	27	1.96
32777149--32777240	38	2.4	38	94	0	157	34	28	20	16	1.94
32782836--32782907	29	2.5	29	100	0	144	31	13	29	25	1.94
32791232--32791258	13	2.1	13	100	0	54	22	33	29	14	1.94
32804709--32804774	30	2.2	30	81	8	80	65	0	4	30	1.13
32804844--32804910	13	5.3	13	74	16	52	65	1	1	31	1.10
32806715--32807398	206	3.3	206	89	2	989	28	23	17	31	1.97
32815441--32815483	15	2.9	15	80	16	54	39	9	25	25	1.85
32815672--32815721	24	2.1	24	96	0	91	30	32	14	24	1.94
32819237--32819350	37	3.1	35	74	16	90	60	1	7	29	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32819271--32819314	22	2.0	21	83	12	54	59	0	11	29	1.32
32823245--32823375	40	3.3	40	78	2	147	25	23	27	23	2.00
32824851--32825037	79	2.4	79	88	7	281	24	21	27	26	1.99
32824855--32825070	79	2.7	80	86	6	264	24	21	27	25	1.99
32824855--32825037	40	4.6	40	91	4	284	22	22	28	26	1.99
32830730--32830831	29	3.5	29	90	0	150	23	33	15	27	1.95
32838579--32838680	29	3.5	29	90	0	150	23	33	15	27	1.95
32843935--32844136	40	5.1	40	88	5	270	24	21	27	26	1.99
32843927--32844113	79	2.4	79	87	3	270	24	21	27	26	1.99
32843927--32844113	40	4.7	40	90	4	272	24	21	27	26	1.99
32843927--32844136	79	2.7	79	85	5	257	25	21	26	26	2.00
32856563--32856747	79	2.3	81	83	7	227	23	27	24	24	2.00
32856556--32856747	40	4.8	39	76	8	163	23	28	23	24	2.00
32864607--32864791	79	2.3	81	83	7	227	23	27	24	24	2.00
32864600--32864791	40	4.8	39	76	8	163	23	28	23	24	2.00
32875585--32875782	71	2.8	70	91	3	285	33	17	28	20	1.95
32875619--32875782	71	2.3	71	98	0	319	34	17	28	18	1.94
32883178--32883295	41	3.1	41	60	28	98	32	17	28	21	1.96
32883146--32883308	71	2.3	71	98	1	319	35	17	28	19	1.94
32883146--32883331	71	2.7	68	91	6	254	34	17	28	19	1.94
32885907--32886073	40	4.2	40	82	2	185	24	26	22	26	2.00
32893748--32893788	20	2.0	20	100	0	82	24	14	26	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32897444--32897481	20	1.9	20	88	0	58	18	13	31	36	1.89
32901925--32902025	28	3.5	28	86	6	114	29	26	13	29	1.94
32916010--32916063	25	2.2	25	100	0	108	44	7	24	24	1.79
32918452--32918603	40	3.8	40	84	5	164	23	25	23	28	1.99
32921179--32921586	43	9.5	43	80	7	339	33	22	18	25	1.96
32921251--32921585	87	3.9	86	83	2	429	32	22	17	27	1.96
32921881--32921926	21	2.2	21	96	0	83	2	58	15	23	1.48
32922480--32922517	19	2.1	18	85	9	51	52	0	7	39	1.31
32930147--32930398	133	1.9	133	99	0	495	51	18	10	19	1.75
32933019--32933050	15	2.1	15	94	0	55	31	9	0	59	1.29
32933915--32933954	14	2.9	14	88	0	53	47	22	0	30	1.52
32934116--32934204	41	2.2	41	93	0	151	20	21	23	34	1.96
32934656--32934694	19	2.1	19	85	0	51	71	7	5	15	1.26
32935158--32935227	27	2.5	28	88	4	97	34	24	24	17	1.96
32935158--32935244	27	3.1	27	80	8	95	32	24	24	19	1.98
32935352--32935415	28	2.3	28	91	5	103	29	7	29	32	1.86
32941610--32942335	48	15.0	48	92	0	1137	37	5	24	32	1.80
32942454--32942604	37	4.1	37	94	1	250	25	18	30	25	1.98
32946972--32947010	19	2.1	19	85	0	51	71	7	5	15	1.26
32947465--32947534	27	2.5	28	86	4	88	32	25	24	17	1.96
32947465--32947551	27	3.1	27	75	11	86	31	25	24	19	1.98
32947660--32947722	28	2.3	27	91	2	99	28	7	30	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32949423--32949675	41	6.2	41	86	2	314	18	22	24	34	1.96
32949423--32949705	82	3.5	81	85	4	304	19	21	23	35	1.96
32958046--32958196	40	3.8	40	77	13	134	27	23	26	22	2.00
32958083--32958212	40	3.2	40	77	4	138	24	23	27	23	2.00
32962280--32962448	40	4.2	40	80	4	173	23	26	21	28	1.99
32965242--32965279	7	5.4	7	93	0	67	42	42	0	15	1.47
32967720--32967820	28	3.5	29	86	6	125	29	27	13	28	1.95
32975568--32975668	28	3.5	29	86	6	125	29	27	13	28	1.95
32980446--32980539	40	2.3	40	85	7	120	26	15	29	27	1.96
32986125--32986189	28	2.3	28	91	0	103	33	26	7	32	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325