Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  310  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94285399--94285455
27
2.3
24
76
21
64
28
26
15
29
1.96
94285361--94285505
76
1.9
75
95
2
265
28
26
11
33
1.91
94285263--94285603
172
2.0
173
96
1
630
30
27
9
33
1.88
94285312--94285554
123
2.0
124
95
1
434
30
26
9
33
1.88
94285217--94285652
221
2.0
219
95
2
793
30
27
8
32
1.88
94292747--94292811
34
2.0
34
81
6
80
30
24
16
27
1.97
94294660--94294793
26
5.2
26
94
0
223
36
23
6
32
1.81
94305853--94305916
30
2.1
30
82
0
74
32
23
7
35
1.84
94310116--94310161
19
2.4
19
100
0
92
43
13
19
23
1.86
94311555--94311611
23
2.4
24
88
8
82
40
15
19
24
1.90
94311708--94311755
24
2.0
24
91
0
78
39
10
27
22
1.87
94311518--94311820
151
2.0
151
95
1
545
31
15
19
33
1.93
94312962--94313030
36
1.9
36
96
0
129
34
5
10
49
1.61
94315153--94315444
143
2.0
145
85
2
399
33
4
16
45
1.67
94316392--94316441
21
2.3
22
83
12
68
66
2
0
32
1.03
94316382--94316441
22
2.8
20
78
14
66
66
1
0
31
1.01
94316485--94316543
30
2.0
30
96
0
109
61
13
0
25
1.33
94317415--94317503
44
2.0
44
97
0
169
50
6
3
39
1.45
94319034--94319073
19
2.1
19
90
9
64
45
2
0
52
1.14
94319297--94319351
16
3.4
16
77
5
56
27
7
20
45
1.77
94319302--94319345
17
2.7
16
82
6
52
27
4
20
47
1.69
94319838--94320105
134
2.0
134
100
0
536
31
17
14
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94321623--94321672
3
18.3
3
80
15
56
72
0
2
26
0.96
94321623--94321691
14
5.1
14
76
15
65
66
2
1
28
1.14
94321622--94321665
11
4.1
11
91
2
72
72
0
2
25
0.96
94324746--94324788
22
2.0
21
86
4
59
65
4
4
25
1.32
94329554--94329686
46
2.9
46
94
0
221
30
15
24
29
1.96
94329557--94329726
46
3.7
46
85
5
186
31
16
22
29
1.96
94329554--94329726
92
1.9
93
82
8
219
31
16
22
29
1.95
94329698--94329872
50
3.6
50
70
12
157
28
18
21
32
1.96
94329698--94329884
94
2.0
94
85
2
250
28
18
20
32
1.96
94329704--94329906
94
2.2
94
81
3
230
28
19
20
32
1.97
94330081--94330233
44
3.5
44
77
1
171
30
21
20
28
1.98
94330125--94330275
45
3.4
45
77
5
128
31
18
19
31
1.96
94330078--94330293
89
2.4
89
84
3
256
32
18
20
28
1.96
94330081--94330278
44
4.5
44
74
5
121
31
19
19
29
1.97
94330144--94330278
45
3.0
46
78
4
141
33
18
20
27
1.96
94330156--94330322
89
1.9
89
83
2
219
34
18
20
26
1.96
94330144--94330338
89
2.2
90
78
4
216
34
16
23
25
1.95
94331956--94332055
26
3.8
26
74
2
92
33
4
4
59
1.35
94332133--94332202
27
2.7
26
82
4
86
32
5
2
58
1.36
94335476--94335515
16
2.6
15
84
7
53
35
7
0
57
1.27
94341046--94341095
26
1.9
25
84
8
64
28
8
2
62
1.35
94353505--94354014
44
11.5
44
74
9
261
31
16
19
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94353502--94354029
133
4.0
132
84
3
625
32
16
20
31
1.94
94353599--94354014
177
2.4
177
78
4
437
32
17
19
31
1.94
94354187--94354301
44
2.6
44
81
9
137
33
16
23
26
1.96
94354085--94354248
89
1.8
89
82
0
211
31
18
20
29
1.96
94355983--94356032
21
2.4
22
76
10
59
26
8
0
66
1.19
94359885--94359983
22
4.7
21
70
16
71
32
3
1
63
1.16
94359892--94359989
9
10.8
9
72
13
67
33
3
1
62
1.18
94359896--94360038
7
21.4
7
65
17
63
33
3
2
60
1.25
94360137--94360221
23
3.6
22
73
10
62
32
5
1
60
1.29
94360173--94360217
14
2.9
15
87
12
65
35
4
2
57
1.31
94360962--94361097
26
5.2
26
94
0
236
33
5
25
36
1.78
94362538--94362612
26
2.8
26
85
4
87
34
21
12
32
1.90
94362716--94362863
27
5.4
27
92
0
233
18
25
22
33
1.97
94362716--94362882
27
6.2
27
89
4
212
19
24
22
34
1.97
94362714--94362882
54
3.1
53
88
3
239
18
24
22
34
1.96
94366024--94366068
15
3.1
15
87
6
58
17
13
11
57
1.64
94366630--94366674
17
2.6
17
80
16
56
48
8
6
35
1.61
94367136--94367178
17
2.5
18
77
14
54
69
2
4
23
1.18
94367140--94367223
19
4.5
19
78
10
75
65
2
4
27
1.25
94367359--94367398
21
2.0
21
90
5
64
57
0
12
30
1.36
94367596--94367661
19
3.4
20
77
10
66
27
9
1
62
1.34
94373793--94373923
57
2.3
57
80
5
140
42
2
3
51
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94374016--94374109
44
2.1
44
88
7
136
36
24
5
34
1.78
94374091--94374147
16
3.6
16
85
7
80
29
26
7
36
1.83
94384503--94384561
31
1.9
31
82
6
75
50
8
8
32
1.63
94387473--94387501
15
2.0
15
93
6
51
68
0
0
31
0.89
94387907--94387938
16
1.9
17
93
6
57
75
0
0
25
0.81
94392179--94392288
26
4.2
26
97
0
193
35
24
6
33
1.81
94393283--94393324
5
8.4
5
100
0
84
40
0
0
59
0.97
94393383--94393443
4
14.2
4
79
17
61
70
1
27
0
0.97
94393392--94393442
13
3.8
13
82
12
59
72
0
27
0
0.85
94394527--94394613
44
2.0
44
84
4
113
25
21
21
31
1.98
94399473--94399558
38
2.3
38
82
11
106
50
2
2
45
1.27
94399828--94399871
5
8.8
5
100
0
88
40
0
0
59
0.98
94405848--94405917
23
2.9
23
81
10
70
28
22
25
22
1.99
94406976--94407080
27
3.6
27
71
22
88
27
21
20
30
1.98
94407118--94407173
20
2.8
20
83
2
69
33
23
16
26
1.95
94409304--94409347
19
2.4
18
85
7
54
40
9
0
50
1.34
94416531--94416582
24
2.2
24
89
3
79
32
19
26
21
1.97
94420774--94420806
2
16.5
2
87
12
50
45
3
0
51
1.16
94430965--94431005
22
1.9
22
85
14
59
9
12
24
53
1.68
94433387--94433719
115
2.9
114
90
4
519
31
0
16
51
1.49
94433779--94433841
22
2.9
22
77
15
60
33
0
4
61
1.17
94434657--94434682
10
2.6
10
100
0
52
30
30
19
19
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94435856--94435943
33
2.6
33
73
18
83
19
45
10
25
1.81
94436299--94436342
19
2.3
19
100
0
88
59
4
9
27
1.48
94443689--94443742
3
18.0
3
100
0
108
66
0
0
33
0.92
94447158--94447241
38
2.3
36
83
8
98
50
2
2
45
1.27
94450791--94450828
17
2.2
17
90
0
58
60
2
2
34
1.24
94454498--94454530
7
4.7
7
96
0
57
24
30
0
45
1.53
94457670--94457695
2
13.0
2
100
0
52
50
0
0
50
1.00
94466156--94466194
20
1.9
21
89
5
62
35
23
7
33
1.83
94471717--94471756
21
1.9
21
84
0
53
42
0
5
52
1.23
94471743--94471820
16
4.6
18
74
16
67
48
1
0
50
1.09
94471739--94471783
18
2.8
16
81
15
56
44
0
0
55
0.99
94471749--94471832
27
3.5
23
73
20
66
53
1
0
45
1.08
94477705--94477734
16
1.9
16
93
6
53
40
3
0
56
1.16
94478985--94479033
22
2.1
23
85
14
66
46
2
0
51
1.12
94479981--94480047
18
4.1
17
67
13
50
67
2
1
28
1.14
94480398--94480447
17
2.8
17
82
17
57
34
0
0
66
0.92
94480389--94480481
44
2.1
46
82
11
113
31
1
3
64
1.16
94480394--94480455
26
2.4
27
81
13
76
32
0
0
67
0.91
94480433--94480488
18
3.1
18
74
5
58
30
1
3
64
1.21
94480616--94480677
31
2.0
31
83
0
79
37
14
24
24
1.93
94480806--94480853
22
2.1
23
88
3
71
62
8
6
22
1.46
94486281--94486362
34
2.4
35
81
4
96
31
13
15
39
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94487666--94487750
44
2.0
43
95
2
152
44
5
7
42
1.55
94500890--94500919
6
5.2
6
96
4
53
46
16
0
36
1.47
94503825--94503857
13
2.4
14
90
5
50
6
24
0
69
1.10
94513608--94513638
10
3.1
10
95
0
53
80
0
3
16
0.83
94521885--94521910
13
2.0
13
100
0
52
23
15
7
53
1.67
94522303--94522337
18
1.9
18
88
0
52
51
5
8
34
1.56
94522582--94522606
2
12.5
2
100
0
50
48
0
0
52
1.00
94523781--94523945
39
4.2
39
97
0
303
21
21
29
27
1.99
94523781--94524015
39
6.0
39
89
4
289
21
21
28
28
1.99
94530433--94530589
39
4.0
39
81
6
142
21
21
28
29
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325