genome.fa.s4.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  181  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55650200--55650352	42	3.6	42	73	7	139	28	24	16	30	1.96
55652308--55652402	24	4.0	24	91	0	136	32	3	37	26	1.72
55654176--55654235	28	2.2	27	88	5	93	20	10	26	43	1.83
55654183--55654241	28	2.1	28	96	0	109	18	11	23	45	1.83
55654863--55654924	27	2.3	27	91	0	97	27	16	16	40	1.89
55654907--55655092	27	6.6	27	76	10	167	30	6	20	41	1.79
55654880--55655092	54	3.8	54	77	10	158	30	8	20	41	1.82
55654940--55655066	62	2.0	62	93	0	218	30	6	20	42	1.77
55655076--55655146	27	2.6	27	75	4	72	29	7	26	36	1.83
55656967--55657077	27	4.1	28	82	5	115	16	22	20	40	1.91
55656967--55657077	54	2.1	53	83	5	134	16	22	20	40	1.91
55663258--55663334	24	3.2	24	88	0	118	33	2	40	23	1.68
55664702--55664812	27	4.1	27	80	10	129	15	24	21	38	1.92
55664702--55664812	54	2.1	53	86	8	154	15	24	21	38	1.92
55666341--55666390	23	2.2	23	85	7	66	30	14	28	28	1.95
55676263--55676320	27	2.1	27	96	0	107	36	17	13	32	1.89
55677764--55677847	42	2.0	43	88	2	125	29	28	17	23	1.97
55681052--55681197	31	4.7	31	96	0	267	28	25	16	29	1.97
55681221--55681311	41	2.2	42	92	4	157	32	18	15	32	1.92
55681459--55681528	25	2.8	25	93	0	113	24	22	27	25	2.00
55683078--55683155	29	2.7	29	83	0	102	26	17	33	21	1.96
55689896--55689945	25	2.0	25	96	3	93	8	32	4	56	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55690923--55691083	29	5.6	29	87	0	214	25	14	33	26	1.95
55694896--55695010	40	2.9	39	79	5	124	27	21	26	23	1.99
55694910--55695039	40	3.3	40	84	3	165	25	22	27	24	2.00
55699248--55699286	19	2.0	20	90	5	62	41	5	10	43	1.61
55705389--55705560	93	1.8	93	96	0	317	27	30	22	20	1.98
55705381--55705556	46	3.8	46	81	10	232	28	29	21	20	1.98
55707938--55708025	29	3.0	29	80	8	97	56	15	17	10	1.66
55707938--55708016	15	5.4	15	77	10	83	58	13	17	10	1.63
55707949--55708025	15	5.2	15	75	9	77	55	15	16	11	1.68
55710975--55711146	93	1.8	93	96	0	317	27	30	22	20	1.98
55710967--55711142	46	3.8	46	81	10	232	28	29	21	20	1.98
55714644--55714750	27	3.9	27	84	11	130	36	22	24	16	1.94
55714641--55714750	54	2.0	54	86	6	152	37	21	24	16	1.93
55721365--55721513	80	1.9	80	81	2	183	22	30	24	22	1.99
55721406--55721513	40	2.7	38	85	8	128	21	29	25	23	1.99
55725388--55725499	42	2.6	43	82	14	133	34	25	15	25	1.94
55734175--55734263	27	3.3	27	88	0	106	29	14	16	39	1.89
55734189--55734450	27	9.6	27	77	8	203	28	11	20	39	1.87
55734279--55734450	53	3.3	53	85	7	192	29	11	19	40	1.86
55734765--55734830	28	2.4	28	92	0	105	25	33	16	24	1.96
55737332--55737357	11	2.4	11	100	0	52	53	19	0	26	1.45
55739028--55739102	29	2.6	29	89	4	107	26	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55746931--55747005	29	2.6	29	89	4	107	26	16	32	25	1.96
55748813--55748928	27	4.3	27	85	2	126	31	13	16	38	1.88
55748907--55749158	107	2.3	108	82	3	294	30	11	21	37	1.88
55748827--55749162	27	12.5	27	81	2	293	30	11	20	37	1.88
55749483--55749546	28	2.3	28	88	0	92	26	35	18	18	1.94
55751018--55751049	5	6.6	5	92	7	57	81	0	0	18	0.70
55751019--55751049	9	3.3	9	95	4	53	80	0	0	19	0.71
55755456--55755487	5	6.6	5	92	7	57	81	0	0	18	0.70
55755457--55755487	9	3.3	9	95	4	53	80	0	0	19	0.71
55756313--55756446	46	2.8	49	77	16	156	29	29	19	20	1.97
55756322--55756461	46	3.0	45	77	11	149	30	29	19	21	1.97
55758823--55758904	30	2.7	30	83	7	103	56	15	17	10	1.67
55758823--55758895	15	4.9	15	81	6	94	57	13	17	10	1.64
55758827--55758904	15	5.2	15	78	9	79	56	15	16	11	1.67
55761793--55761964	46	3.8	46	78	15	196	28	30	20	20	1.98
55761801--55761969	90	1.8	92	92	3	288	27	30	21	20	1.98
55767393--55767621	50	4.7	49	77	9	229	25	29	17	27	1.97
55767437--55767619	94	1.9	98	87	6	275	25	29	17	27	1.97
55773726--55773799	29	2.5	28	82	8	85	39	13	29	17	1.88
55773785--55774004	30	7.4	30	73	7	144	36	13	24	25	1.92
55773756--55774019	119	2.2	119	81	6	293	37	14	24	23	1.93
55773723--55774003	149	1.9	149	84	1	375	38	13	24	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55776072--55776269	27	7.3	27	86	2	245	29	25	6	38	1.81
55776072--55776269	81	2.4	81	89	1	290	29	25	6	38	1.81
55776268--55776451	27	6.8	27	81	5	185	40	20	9	29	1.83
55776301--55776450	81	1.9	81	87	2	221	42	21	7	29	1.80
55776301--55776536	27	8.7	27	77	5	170	40	20	8	31	1.81
55778835--55778912	29	2.7	29	83	0	102	21	33	17	26	1.96
55783808--55783936	40	3.3	39	74	16	122	24	26	24	24	2.00
55783824--55783936	40	2.8	39	83	7	131	23	27	24	23	2.00
55783824--55783973	40	3.8	40	79	8	130	22	26	24	26	2.00
55789133--55789284	40	3.8	39	84	1	151	23	26	23	26	2.00
55789133--55789284	80	1.9	80	83	5	200	23	26	23	26	2.00
55797112--55797241	40	3.2	40	77	13	142	24	26	24	23	2.00
55797128--55797278	40	3.8	40	80	6	146	22	26	24	26	2.00
55799542--55799618	9	7.9	9	72	16	64	35	9	20	35	1.85
55799540--55799622	20	4.2	20	96	0	157	36	12	19	32	1.88
55799551--55799622	11	7.1	11	70	17	66	36	12	19	31	1.89
55799677--55799820	23	6.1	23	87	7	209	27	20	22	29	1.99
55799680--55799811	71	1.9	70	93	1	228	24	22	24	28	1.99
55799677--55799820	48	3.1	46	88	5	209	27	20	22	29	1.99
55801745--55801769	10	2.5	10	100	0	50	28	0	24	48	1.52
55803514--55803555	22	1.9	22	85	9	59	33	2	42	21	1.66
55803775--55803819	23	2.0	23	95	0	81	33	6	28	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55805946--55806001	28	2.0	28	100	0	112	21	25	21	32	1.98
55806964--55806992	14	2.1	14	100	0	58	24	34	13	27	1.93
55816214--55816281	28	2.4	30	81	11	74	69	2	2	25	1.17
55818348--55818377	15	2.0	15	93	0	51	50	3	0	46	1.18
55818449--55818481	14	2.4	14	90	10	50	33	3	0	63	1.10
55823472--55823499	14	2.0	14	100	0	56	28	21	21	28	1.99
55831167--55831373	40	5.2	40	92	2	328	27	26	22	23	2.00
55833455--55833635	78	2.3	80	84	6	235	24	22	28	24	1.99
55833456--55833638	40	4.6	39	80	10	212	24	21	28	25	1.99
55840459--55840679	39	5.6	39	90	0	307	23	22	31	22	1.99
55844837--55845017	78	2.3	80	84	6	235	24	22	28	24	1.99
55844838--55845020	40	4.6	39	80	10	212	24	21	28	25	1.99
55847120--55847165	24	1.9	24	82	8	58	43	23	6	26	1.78
55854626--55854795	92	1.8	93	94	1	306	28	29	20	21	1.98
55854617--55854791	46	3.8	46	78	17	209	29	28	20	21	1.98
55857440--55857610	93	1.8	93	96	0	315	28	29	21	21	1.98
55857432--55857607	46	3.8	46	80	12	225	28	28	21	21	1.98
55859055--55859180	40	3.2	40	90	3	193	26	26	22	23	2.00
55860601--55860628	13	2.2	13	100	0	56	57	14	0	28	1.38
55867049--55867170	47	2.6	47	96	0	226	22	17	28	31	1.97
55871465--55871649	67	2.9	64	76	11	189	28	17	30	23	1.97
55888494--55888659	24	7.0	24	88	4	248	28	21	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55888494--55888660	47	3.5	47	92	3	264	28	21	22	28	1.99
55888717--55888793	9	7.9	9	72	16	64	35	20	9	35	1.85
55888705--55888795	20	4.6	20	95	0	164	32	20	10	35	1.88
55888710--55888784	11	7.4	11	71	17	72	32	20	12	36	1.89
55900120--55900218	28	3.5	28	81	9	112	29	25	16	29	1.96
55904890--55905060	93	1.8	93	93	0	297	28	28	21	21	1.98
55904885--55905057	46	3.7	46	79	10	199	29	27	20	21	1.98
55905480--55905539	30	2.0	30	86	0	84	30	25	6	38	1.81
55907563--55907587	2	12.5	2	100	0	50	48	0	0	52	1.00
55909379--55909527	80	1.9	80	81	2	183	22	30	24	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325