Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  307  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93645812--93645875
15
4.4
14
70
18
51
68
1
4
25
1.17
93645906--93645947
22
2.0
22
90
4
68
59
7
0
33
1.25
93648001--93648140
71
2.0
72
89
1
219
20
26
19
33
1.96
93648187--93648260
33
2.2
33
80
4
87
20
45
17
16
1.85
93652565--93652604
21
2.0
20
90
5
62
0
37
0
62
0.95
93652563--93652605
10
4.3
10
81
18
54
0
34
0
65
0.93
93654367--93654431
15
4.6
14
76
12
62
52
4
0
43
1.22
93654354--93654417
30
2.1
30
88
5
94
50
6
0
43
1.27
93654562--93654600
15
2.7
14
76
7
51
43
0
5
51
1.24
93658748--93658810
22
2.9
22
92
0
99
31
53
6
7
1.55
93659208--93659248
12
3.2
13
86
10
57
78
4
4
12
1.07
93659355--93659384
14
2.1
15
93
6
53
0
53
0
46
1.00
93659342--93659394
22
2.4
22
78
12
63
0
54
0
45
0.99
93660268--93660328
5
13.0
5
74
19
60
36
3
0
60
1.13
93660278--93660330
19
2.8
19
85
8
72
37
5
0
56
1.23
93662998--93663159
26
6.2
26
97
1
299
32
3
23
40
1.72
93664941--93665226
137
2.1
136
94
0
491
23
18
25
32
1.97
93666464--93666489
6
4.3
6
100
0
52
19
0
0
80
0.71
93668955--93668995
18
2.3
18
87
4
57
60
9
2
26
1.40
93669253--93669283
12
2.6
12
100
0
62
54
19
9
16
1.68
93669669--93669710
21
2.0
21
82
17
52
40
4
0
54
1.21
93672739--93672996
131
2.0
131
93
0
444
27
16
19
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93673936--93673964
6
5.0
6
91
8
51
34
0
48
17
1.47
93674601--93674665
19
3.4
19
76
18
64
61
3
4
30
1.31
93688898--93688940
22
1.9
23
85
4
61
48
11
6
32
1.66
93691179--93691258
39
2.0
40
90
4
126
48
13
22
15
1.79
93691576--93691651
39
1.9
39
91
0
125
21
34
15
28
1.94
93691898--93691935
2
19.0
2
100
0
76
50
0
0
50
1.00
93693930--93693977
24
2.0
24
100
0
96
33
29
16
20
1.95
93695131--93695168
20
1.9
20
84
10
51
26
10
18
44
1.82
93697807--93697840
12
2.9
12
86
4
52
41
0
0
58
0.98
93699027--93699076
24
2.0
25
84
3
66
62
14
12
12
1.56
93701866--93701908
21
2.0
21
95
0
77
44
4
16
34
1.68
93704187--93704233
25
2.0
25
83
8
62
27
14
4
53
1.60
93704494--93704805
46
7.0
47
86
7
393
22
24
15
38
1.92
93704671--93704795
38
3.1
39
80
17
171
24
24
16
35
1.95
93704630--93704794
84
2.0
84
98
0
321
23
24
16
35
1.95
93704494--93704805
130
2.3
133
87
6
427
22
24
15
38
1.92
93710758--93710782
5
5.0
5
100
0
50
0
20
0
80
0.72
93721829--93721878
26
2.0
24
88
7
73
64
6
0
30
1.18
93721849--93721907
21
2.8
21
78
12
59
71
6
0
22
1.09
93723814--93723855
15
2.8
15
75
10
50
52
2
2
42
1.27
93729820--93729844
3
8.3
3
100
0
50
68
0
32
0
0.90
93730228--93730252
7
3.6
7
100
0
50
12
0
0
88
0.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93731555--93731631
40
1.9
40
86
0
109
46
2
7
42
1.46
93734582--93734607
9
2.9
9
100
0
52
46
0
0
53
1.00
93741614--93741706
28
3.4
27
86
5
116
69
22
1
6
1.17
93742480--93742509
11
2.7
11
89
0
51
40
0
0
60
0.97
93744740--93744775
12
3.0
12
87
0
54
25
22
5
47
1.73
93751493--93751667
71
2.5
70
86
4
230
28
14
23
33
1.94
93751687--93751816
70
1.9
69
88
4
201
24
15
23
36
1.94
93751941--93752076
70
1.9
70
93
0
236
21
16
24
37
1.94
93752060--93752089
14
2.1
14
100
0
60
13
13
6
66
1.43
93752075--93752979
73
11.7
71
71
20
363
29
17
19
32
1.95
93751937--93753220
161
8.2
162
78
14
942
28
17
20
33
1.95
93752166--93752328
88
1.9
87
87
5
238
28
20
20
30
1.98
93752398--93753163
72
10.2
73
75
16
603
30
16
19
33
1.94
93752398--93753093
154
4.6
149
75
15
565
30
16
18
33
1.94
93752255--93752979
226
3.2
228
82
11
805
29
17
20
32
1.95
93753139--93753332
89
2.2
88
81
11
218
25
19
18
37
1.94
93753863--93753951
20
4.2
20
67
24
56
58
5
4
31
1.41
93754724--93754788
29
2.2
30
83
2
78
3
9
12
75
1.15
93754723--93754791
30
2.3
30
85
5
86
2
8
11
76
1.11
93754721--93754811
33
2.8
33
88
5
132
3
6
14
75
1.12
93754753--93754811
18
3.4
18
66
29
56
3
5
16
74
1.13
93755632--93755692
30
2.0
31
90
3
97
45
27
6
19
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93755810--93756040
76
3.0
77
81
7
261
33
18
17
30
1.94
93755847--93756385
78
6.9
78
77
13
278
33
18
17
30
1.94
93756057--93756404
78
4.7
75
85
7
426
33
19
16
31
1.94
93756057--93756407
149
2.4
150
85
7
441
32
19
16
31
1.94
93756361--93756456
49
2.0
49
95
0
174
33
20
15
30
1.94
93756290--93756528
121
2.0
120
92
0
397
33
19
15
30
1.93
93756410--93756648
72
3.2
72
81
10
273
34
17
16
31
1.92
93756803--93756864
30
2.1
30
90
6
99
41
29
9
19
1.83
93756642--93757488
241
3.6
237
77
14
645
35
19
16
27
1.94
93756597--93757686
166
6.7
159
73
15
598
35
19
16
27
1.94
93756977--93757444
74
6.2
74
82
7
518
33
19
17
29
1.95
93756987--93757444
147
3.0
149
83
6
550
33
19
17
29
1.95
93757424--93757458
14
2.5
14
90
0
52
57
5
20
17
1.60
93757352--93757692
87
3.9
85
84
6
405
37
19
16
26
1.93
93757709--93757898
72
2.6
72
85
4
256
35
24
14
25
1.94
93757937--93758160
72
3.1
71
83
2
324
39
22
14
24
1.91
93757709--93758323
257
2.4
257
95
1
1081
35
23
14
25
1.93
93758160--93758320
70
2.4
66
82
10
179
32
24
14
27
1.95
93763336--93763371
12
3.0
12
95
0
63
41
5
25
27
1.77
93765855--93765884
12
2.5
12
100
0
60
46
0
43
10
1.37
93765954--93766016
17
3.7
17
70
8
56
4
4
19
71
1.22
93765923--93766013
34
2.8
34
87
9
129
4
6
13
75
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93767957--93767997
18
2.3
18
82
0
55
51
2
0
46
1.14
93768126--93768179
22
2.3
24
87
9
85
42
3
0
53
1.18
93769944--93770030
21
4.0
23
80
10
92
37
25
21
14
1.92
93770399--93770455
15
3.8
15
86
4
80
50
12
0
36
1.40
93771721--93771752
5
6.2
5
96
3
55
56
0
0
43
0.99
93773563--93773597
15
2.3
15
90
0
52
40
8
2
48
1.49
93787435--93787473
10
3.9
10
80
12
53
20
7
2
69
1.26
93789814--93789886
33
2.2
33
82
0
83
36
20
13
28
1.91
93791274--93791332
23
2.6
23
86
5
84
18
3
0
77
0.90
93792425--93792621
95
2.1
96
86
0
279
31
14
23
30
1.94
93793084--93793156
36
2.0
36
100
0
146
39
13
32
13
1.84
93793279--93793317
10
3.9
10
80
12
53
23
7
0
69
1.14
93794624--93794674
25
2.0
25
100
0
102
49
3
11
35
1.58
93797140--93797170
15
2.1
15
100
0
62
48
12
0
38
1.42
93800638--93800705
31
2.2
31
83
0
82
42
10
8
38
1.70
93800649--93800718
31
2.3
31
90
5
106
30
12
8
48
1.71
93800782--93800820
21
1.9
19
90
10
60
76
0
0
23
0.78
93801648--93801678
10
3.1
10
100
0
62
38
19
0
41
1.51
93803090--93803143
24
2.2
24
83
6
74
38
22
22
16
1.93
93803162--93803230
25
2.8
25
80
8
86
37
20
26
15
1.93
93806120--93806810
344
2.0
344
97
0
1292
35
12
18
32
1.89
93807045--93807069
12
2.1
12
100
0
50
24
8
0
68
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93807446--93807497
9
5.6
9
75
8
50
42
0
1
55
1.10
93807445--93807497
19
2.8
19
77
8
54
43
0
1
54
1.11
93809937--93809969
17
2.0
17
88
5
50
48
36
6
9
1.60
93817380--93817597
39
5.6
39
91
0
328
38
22
25
13
1.91
93819856--93819927
26
2.8
26
80
6
83
65
0
9
25
1.23
93820072--93820248
15
12.0
15
73
17
122
57
3
7
31
1.44
93819855--93820227
3
126.7
3
70
12
132
60
3
8
27
1.43
93820194--93820248
21
2.6
21
85
5
67
63
0
3
32
1.12
93820506--93820578
7
10.3
7
77
11
69
64
2
2
30
1.21
93820672--93820718
3
15.7
3
100
0
94
65
0
0
34
0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325