genome.fa.s4.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  224  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69749827--69749994	40	4.2	40	82	3	178	25	26	22	26	2.00
69755214--69755356	50	2.8	51	86	1	189	24	18	27	29	1.98
69755230--69755387	51	3.1	50	82	4	174	27	17	25	29	1.98
69759727--69759829	44	2.4	42	80	10	118	26	16	25	32	1.96
69771687--69772297	27	22.9	27	77	9	443	30	8	18	41	1.80
69774505--69774671	40	4.2	40	79	6	169	26	22	26	24	2.00
69782443--69782591	40	3.8	39	79	8	142	25	24	27	22	2.00
69782442--69782607	40	4.2	40	76	11	137	25	23	27	23	2.00
69790438--69790603	40	4.2	39	79	9	169	26	22	27	23	2.00
69793746--69793808	31	2.0	31	96	0	117	34	25	3	36	1.72
69796194--69796359	40	4.2	39	79	9	169	26	22	27	23	2.00
69799461--69799522	31	2.0	31	93	3	108	35	24	3	37	1.72
69801894--69802044	40	3.8	39	80	6	153	27	23	27	22	1.99
69801931--69802060	40	3.3	39	80	4	161	24	23	27	24	2.00
69804820--69804864	13	3.3	13	81	6	54	75	2	0	22	0.91
69806863--69806900	16	2.4	16	86	4	60	55	2	7	34	1.43
69814099--69814283	40	4.7	40	82	7	209	24	22	27	25	2.00
69814152--69814316	79	2.1	79	83	6	201	26	21	27	25	1.99
69821854--69821923	27	2.5	28	95	2	124	28	14	27	30	1.95
69821854--69821935	27	3.0	27	85	8	78	29	15	24	30	1.96
69833126--69833159	18	1.9	17	88	5	50	17	29	35	17	1.93
69833614--69833710	34	2.9	34	95	0	167	26	18	26	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69840782--69840881	34	2.9	34	87	1	155	27	15	26	32	1.95
69851007--69851055	24	2.0	24	100	0	98	40	4	20	34	1.71
69852363--69852477	23	4.9	23	81	8	117	24	20	19	36	1.95
69854429--69854515	37	2.3	36	88	5	129	25	32	20	21	1.98
69854584--69855029	49	9.2	49	90	5	728	28	28	9	33	1.88
69854564--69855029	98	4.8	98	94	2	805	28	28	9	33	1.89
69854564--69855027	192	2.4	193	93	2	786	28	28	9	33	1.89
69857332--69857356	13	1.9	13	100	0	50	36	0	24	40	1.55
69859524--69859708	40	4.7	40	82	6	207	24	27	22	25	2.00
69859524--69859708	79	2.3	81	81	6	216	24	27	22	25	2.00
69861450--69861502	25	2.1	26	82	3	63	67	7	9	15	1.39
69863339--69863368	13	2.2	14	94	5	53	33	0	13	53	1.40
69863835--69863879	22	2.0	22	100	0	90	46	8	13	31	1.74
69866419--69866522	42	2.5	42	90	0	163	27	22	15	34	1.94
69869447--69869513	21	3.2	21	74	4	64	41	13	22	22	1.88
69874456--69874571	29	4.0	29	100	0	232	31	13	27	27	1.94
69874459--69874615	58	2.7	58	89	2	199	28	15	29	26	1.96
69874456--69874644	87	2.2	87	83	3	229	27	16	30	25	1.97
69878904--69878975	24	3.0	24	74	9	76	69	8	6	15	1.35
69878927--69878983	30	1.9	30	85	7	80	64	14	8	12	1.48
69878986--69879040	27	2.0	27	100	0	110	56	18	10	14	1.67
69881790--69881931	48	2.9	49	82	7	173	25	30	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69900439--69900599	40	4.0	40	82	0	169	35	16	26	21	1.94
69900439--69900600	80	2.0	81	84	1	209	35	16	26	20	1.94
69913012--69913209	71	2.8	70	92	3	294	33	17	28	20	1.95
69913078--69913195	41	3.1	41	60	28	98	32	17	28	21	1.96
69913046--69913209	71	2.3	71	100	0	328	35	17	28	18	1.94
69916820--69917017	71	2.8	70	92	3	294	33	17	28	20	1.95
69916886--69917003	41	3.1	41	60	28	98	32	17	28	21	1.96
69916854--69917017	71	2.3	71	100	0	328	35	17	28	18	1.94
69918742--69918928	71	2.7	68	93	5	281	18	28	18	34	1.95
69918765--69918928	71	2.3	71	100	0	328	18	28	17	35	1.94
69918765--69918962	71	2.8	70	92	3	276	20	28	17	33	1.95
69923309--69923380	36	2.0	36	100	0	144	30	25	16	27	1.97
69928476--69928680	40	5.2	39	81	8	200	26	21	26	25	1.99
69928476--69928680	80	2.6	80	79	5	227	26	21	26	25	1.99
69930884--69930994	57	1.9	57	98	0	213	33	24	16	26	1.96
69931811--69931958	42	3.5	42	74	11	124	30	27	19	22	1.98
69931831--69931959	42	3.0	43	77	10	129	32	27	18	20	1.96
69934953--69935003	25	2.0	25	88	0	75	31	23	21	23	1.98
69939543--69939661	6	19.3	6	68	17	57	46	13	20	20	1.84
69939564--69939633	25	2.8	25	88	0	104	42	12	24	20	1.86
69939590--69939661	31	2.3	31	85	0	99	47	12	19	20	1.82
69940175--69940315	54	2.9	46	85	9	149	44	6	20	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69940222--69940685	27	17.2	27	86	1	608	42	7	20	29	1.81
69940638--69940837	54	3.7	53	71	6	152	30	9	22	38	1.85
69940693--69940832	27	5.2	27	80	7	133	28	9	22	40	1.85
69945072--69945118	14	3.0	16	84	12	62	4	27	0	68	1.08
69946342--69946371	15	1.9	16	93	6	53	30	26	3	40	1.72
69947362--69947430	28	2.5	28	95	2	122	43	27	10	18	1.82
69951667--69951735	28	2.5	28	95	2	122	43	27	10	18	1.82
69955130--69955265	19	7.2	19	90	7	206	38	8	16	36	1.80
69955130--69955265	36	3.6	37	89	7	195	38	8	16	36	1.80
69955130--69955265	55	2.4	55	87	9	193	38	8	16	36	1.80
69960885--69960943	1	59.0	1	79	0	55	88	0	10	1	0.60
69960886--69960942	9	6.9	8	82	13	62	87	0	10	1	0.61
69960887--69960944	21	2.7	22	86	7	84	86	0	10	3	0.69
69960885--69960943	28	2.1	28	87	6	84	88	0	10	1	0.60
69961899--69962040	43	3.3	43	65	19	116	28	19	22	29	1.98
69961892--69962423	84	6.4	84	84	5	701	29	21	22	26	1.99
69962542--69962746	87	2.3	89	85	3	281	33	19	21	25	1.97
69963332--69963422	19	4.8	19	91	8	150	38	9	15	36	1.81
69963315--69963402	36	2.5	36	89	10	121	39	9	13	37	1.77
69963344--69963400	17	3.5	15	84	15	53	38	10	15	35	1.82
69963589--69963670	41	2.0	41	97	0	155	13	31	10	43	1.79
69966403--69966508	6	17.2	6	70	16	74	48	14	16	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69966394--69966465	18	3.9	18	75	13	58	48	15	16	19	1.81
69966403--69966495	37	2.5	37	85	0	114	47	13	17	21	1.82
69966441--69966511	31	2.3	31	90	0	106	49	14	15	21	1.79
69966656--69966757	27	3.8	26	88	5	132	36	21	23	18	1.95
69966674--69966775	54	1.9	54	82	4	127	37	22	22	17	1.94
69966916--69966980	22	3.0	22	75	8	69	32	23	23	21	1.98
69967407--69967727	27	12.0	27	87	2	371	25	19	19	34	1.96
69967637--69967748	27	4.1	27	83	4	127	28	10	23	37	1.88
69967740--69967922	27	6.8	27	82	3	208	39	7	23	30	1.81
69967740--69967922	54	3.4	53	86	3	233	39	7	23	30	1.81
69967783--69967956	80	2.2	81	82	2	215	38	8	21	31	1.84
69967938--69968195	27	9.5	26	76	11	189	32	8	18	41	1.80
69967944--69968195	54	4.6	53	82	3	245	32	8	18	40	1.80
69967990--69968195	27	7.6	27	79	4	218	31	8	19	40	1.81
69969452--69969597	57	2.5	58	80	4	161	35	17	15	30	1.92
69972849--69972953	39	2.7	39	87	1	147	22	31	20	25	1.98
69979007--69979087	37	2.2	37	88	0	117	27	30	14	27	1.95
69979243--69979333	46	2.0	46	84	0	119	27	31	7	32	1.85
69979307--69979578	47	5.6	47	86	5	319	26	28	11	33	1.91
69979307--69979575	94	2.8	94	86	3	358	26	28	11	32	1.91
69979307--69979575	141	1.9	144	85	4	382	26	28	11	32	1.91
69983563--69983714	40	3.8	40	95	1	261	23	30	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69984985--69985089	37	2.9	36	88	2	138	29	28	15	26	1.96
69985243--69985471	47	4.9	46	81	11	138	25	30	10	33	1.90
69985307--69985601	47	6.1	47	87	5	356	26	29	12	32	1.92
69985307--69985575	141	1.9	144	88	4	409	25	29	12	32	1.92
69991582--69991846	46	5.7	46	71	16	206	22	18	28	30	1.97
69991574--69991839	93	2.9	93	89	1	399	22	18	28	30	1.98
69991635--69991792	47	3.4	45	74	15	151	21	17	30	30	1.96
70006737--70006821	29	3.0	29	80	16	106	28	31	15	24	1.95
70010585--70010633	20	2.5	20	89	0	71	12	28	36	22	1.90
70012447--70012480	17	2.0	17	88	11	52	0	29	0	70	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325