genome.fa.s4.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  121  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36351754--36351875	37	3.3	37	97	0	226	21	33	19	25	1.97
36351977--36352196	49	4.5	49	94	2	363	30	30	8	31	1.87
36360092--36360274	40	4.6	39	85	7	210	26	22	26	25	2.00
36360092--36360276	80	2.3	81	83	9	247	25	22	26	25	2.00
36360092--36360309	80	2.8	80	78	14	238	27	22	26	24	2.00
36364801--36364837	18	2.1	18	100	0	74	27	21	10	40	1.86
36366764--36366792	13	2.2	13	100	0	58	31	0	13	55	1.39
36367081--36367107	14	1.9	14	100	0	54	25	7	0	66	1.17
36373344--36373372	13	2.2	13	100	0	58	31	0	13	55	1.39
36374876--36374963	44	2.0	44	97	0	167	36	10	9	44	1.70
36375618--36375669	27	2.0	26	81	11	61	65	3	17	13	1.41
36376214--36376294	39	2.1	38	84	6	101	62	4	2	29	1.29
36376215--36376420	9	22.3	9	67	17	77	63	2	4	29	1.28
36376407--36376445	19	2.0	19	85	14	53	69	7	2	20	1.26
36376710--36376744	17	2.1	16	89	5	52	37	5	0	57	1.23
36376798--36376835	20	1.9	20	89	10	60	34	2	0	63	1.09
36376795--36376862	29	2.3	28	85	7	82	35	1	4	58	1.27
36380228--36380292	24	2.7	24	80	0	76	52	6	10	30	1.61
36383242--36383425	67	2.8	64	77	7	201	29	16	29	23	1.97
36384954--36385052	28	3.5	28	81	9	112	29	25	16	29	1.96
36392608--36392706	28	3.5	28	81	9	112	29	25	16	29	1.96
36400057--36400227	37	4.7	37	83	7	183	24	28	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36400057--36400191	71	1.9	73	87	3	202	23	29	23	22	1.99
36404617--36404677	30	2.0	30	83	0	77	31	22	8	37	1.84
36407037--36407065	2	14.5	2	100	0	58	51	0	0	48	1.00
36413168--36413193	12	2.2	12	100	0	52	53	0	7	38	1.30
36417027--36417060	17	2.0	17	94	0	59	50	17	14	17	1.79
36417548--36417585	17	2.1	18	85	9	51	26	42	21	10	1.85
36420584--36420764	40	4.5	40	79	7	188	24	25	23	26	2.00
36420584--36420762	80	2.2	81	85	3	236	24	25	24	26	2.00
36423356--36423404	25	2.0	25	100	0	98	24	32	18	24	1.97
36428655--36428835	40	4.5	40	79	7	188	24	25	23	26	2.00
36428655--36428833	80	2.2	81	85	3	236	24	25	24	26	2.00
36432804--36432837	17	2.0	17	100	0	68	23	5	29	41	1.78
36433240--36433329	45	2.0	46	82	6	112	30	18	27	23	1.98
36435260--36435377	41	3.1	41	60	28	98	32	17	28	21	1.96
36435228--36435391	71	2.3	71	100	0	328	35	17	28	18	1.94
36442830--36442947	41	3.1	41	60	28	98	32	17	28	21	1.96
36442798--36442961	71	2.3	71	100	0	328	35	17	28	18	1.94
36460475--36460719	49	4.9	49	83	3	258	26	19	26	27	1.99
36464263--36464412	67	2.2	67	81	8	171	32	17	28	21	1.96
36464287--36464470	67	2.8	64	77	8	194	29	17	29	22	1.97
36465553--36465581	2	14.5	2	100	0	58	48	0	0	51	1.00
36467048--36467095	24	2.0	24	95	0	87	39	16	12	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36473994--36474163	46	3.6	47	76	12	179	28	18	28	24	1.98
36473990--36474262	47	5.8	47	72	11	200	27	17	30	24	1.97
36476427--36476458	15	2.0	17	88	11	50	43	31	0	25	1.55
36484803--36484954	27	5.7	27	85	7	211	30	23	7	38	1.83
36484772--36484961	80	2.3	80	83	8	235	31	25	7	35	1.85
36484803--36484954	53	2.8	54	89	4	236	30	23	7	38	1.83
36484767--36484961	27	7.3	27	77	8	112	32	24	7	35	1.84
36484944--36485073	27	4.8	27	82	2	154	37	23	11	26	1.89
36484945--36485089	27	5.4	27	84	1	107	37	22	13	26	1.91
36490843--36490935	29	3.2	29	87	0	123	33	16	27	22	1.95
36490843--36490948	29	3.7	29	82	5	115	30	16	31	22	1.95
36498734--36498826	29	3.2	29	87	0	123	33	16	27	22	1.95
36498734--36498839	29	3.7	29	82	5	115	30	16	31	22	1.95
36502408--36502526	39	3.1	38	85	8	179	25	21	31	22	1.98
36503264--36503327	31	2.1	31	91	5	103	28	12	28	31	1.93
36510447--36510599	39	3.9	39	92	0	243	24	20	31	23	1.98
36510448--36510630	39	4.6	39	88	0	240	24	22	30	22	1.99
36510454--36510668	78	2.7	79	81	5	177	25	22	30	22	1.99
36512833--36513022	53	3.6	53	81	6	185	35	16	24	23	1.95
36522485--36522652	40	4.2	40	79	1	158	22	27	23	26	2.00
36522501--36522650	80	1.9	80	84	5	205	21	27	24	26	1.99
36524614--36524647	18	1.9	17	88	5	50	29	5	0	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36536910--36537039	40	3.2	40	82	4	165	23	28	24	23	2.00
36539628--36539667	6	6.5	6	82	5	53	77	0	5	17	0.94
36541338--36541379	19	2.1	21	86	8	61	21	9	0	69	1.17
36550801--36550849	3	16.3	3	100	0	98	65	0	0	34	0.93
36554436--36554601	40	4.2	40	87	2	228	28	28	20	22	1.98
36555603--36555648	24	1.9	24	82	8	58	43	23	6	26	1.78
36556021--36556048	13	2.2	13	100	0	56	57	14	0	28	1.38
36561321--36561346	13	2.0	13	100	0	52	15	38	30	15	1.88
36567149--36567177	12	2.3	13	94	5	51	20	6	6	65	1.40
36570211--36570235	2	12.5	2	100	0	50	52	0	0	48	1.00
36572232--36572292	30	2.0	30	83	0	77	31	22	8	37	1.84
36574653--36574677	2	12.5	2	100	0	50	52	0	0	48	1.00
36580359--36580545	71	2.7	68	93	5	281	18	28	18	34	1.95
36580382--36580545	71	2.3	71	100	0	328	18	28	17	35	1.94
36580382--36580579	71	2.8	70	92	3	276	20	28	17	33	1.95
36587927--36588113	71	2.7	68	93	5	281	18	28	18	34	1.95
36587950--36588113	71	2.3	71	100	0	328	18	28	17	35	1.94
36587950--36588147	71	2.8	70	92	3	276	20	28	17	33	1.95
36589937--36589965	5	5.8	5	100	0	58	58	0	0	41	0.98
36597711--36597881	93	1.8	93	91	2	281	22	21	28	28	1.99
36597717--36597886	46	3.7	46	74	16	170	22	20	28	28	1.99
36604818--36605076	129	2.0	129	91	0	419	31	12	22	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36607336--36607460	46	2.7	46	91	1	198	20	20	28	30	1.98
36607684--36607721	19	2.0	20	85	15	53	36	0	23	39	1.55
36614834--36615005	46	3.7	46	77	14	201	21	20	27	30	1.98
36614831--36615000	92	1.8	92	93	0	295	21	20	28	29	1.98
36615230--36615267	19	2.0	20	85	15	53	36	0	23	39	1.55
36617258--36617357	42	2.4	42	80	8	114	26	19	24	31	1.98
36617199--36617369	43	4.0	43	68	14	118	26	16	23	33	1.96
36620529--36620736	40	5.2	39	82	1	200	25	25	22	26	2.00
36620529--36620734	80	2.6	81	83	3	238	25	25	22	26	2.00
36636760--36636815	24	2.3	24	100	0	112	28	10	32	28	1.90
36643895--36644115	40	5.6	40	91	1	338	23	20	29	26	1.99
36648598--36648627	12	2.6	12	94	5	53	33	0	26	40	1.57
36650903--36651024	54	2.3	54	86	2	174	24	18	24	31	1.98
36650903--36651039	54	2.5	54	83	0	157	24	18	23	32	1.97
36666083--36666254	93	1.8	93	96	0	317	27	29	21	20	1.98
36666076--36666251	46	3.8	46	79	12	216	28	29	21	20	1.98
36673524--36673742	46	4.8	45	82	11	268	29	28	21	20	1.98
36673531--36673699	93	1.8	93	96	0	311	28	29	21	20	1.98
36686184--36686272	43	2.1	43	84	0	115	30	34	22	12	1.91
36689198--36689258	30	2.0	30	83	0	77	31	22	8	37	1.84
36691460--36691563	43	2.4	43	80	6	122	33	28	17	20	1.95
36694332--36694401	27	2.6	27	95	2	122	30	27	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36701372--36701427	27	2.1	27	96	3	105	21	10	26	41	1.86
36703679--36703714	19	1.9	19	88	5	56	44	0	11	44	1.39
36706941--36707093	39	3.9	39	92	0	243	24	20	31	23	1.98
36706942--36707124	39	4.6	39	88	0	240	24	22	30	22	1.99
36706948--36707162	78	2.7	79	81	5	177	25	22	30	22	1.99
36713477--36713579	29	3.6	27	81	5	98	29	33	16	21	1.95
36723678--36723780	29	3.6	27	81	5	98	29	33	16	21	1.95
36731052--36731150	40	2.6	39	84	6	121	38	37	13	11	1.80
36739448--36739516	28	2.5	28	95	2	122	18	10	27	43	1.82
36741327--36741369	18	2.4	18	84	3	52	41	9	0	48	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325