genome.fa.s4.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  164  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50668447--50668617	93	1.8	93	93	0	297	21	21	28	28	1.98
50668847--50668884	19	2.0	20	85	15	53	36	0	23	39	1.55
50676139--50676296	86	1.8	86	84	2	219	28	26	16	28	1.97
50676139--50676311	43	4.0	43	78	7	172	29	26	17	27	1.97
50682887--50683079	39	4.9	40	91	2	311	23	28	21	26	1.99
50682876--50683079	79	2.6	79	88	3	313	23	27	22	26	1.99
50683669--50683696	2	14.0	2	100	0	56	50	0	0	50	1.00
50694024--50694166	40	3.6	39	86	6	198	23	27	25	24	2.00
50707329--50707528	76	2.6	76	89	3	294	29	26	23	22	1.99
50707329--50707499	38	4.5	38	94	0	288	30	26	22	20	1.98
50709592--50709630	3	13.0	3	100	0	78	66	0	0	33	0.92
50721131--50721229	41	2.4	42	80	10	105	28	29	14	28	1.95
50722676--50722740	27	2.4	27	86	0	103	23	10	26	40	1.87
50722730--50722963	81	2.9	81	88	1	344	39	8	23	29	1.83
50722730--50722994	81	3.3	81	85	4	329	37	8	24	29	1.85
50722730--50722963	27	8.7	27	85	3	310	39	8	23	29	1.83
50727257--50727359	29	3.6	28	80	5	116	21	16	33	29	1.95
50734343--50734527	39	4.7	39	93	0	253	31	27	19	21	1.97
50743248--50743305	26	2.2	26	79	11	64	39	1	3	55	1.27
50744765--50744799	18	1.9	18	94	0	61	45	2	31	20	1.65
50753065--50753190	42	3.0	43	86	4	168	23	30	20	26	1.99
50760588--50760754	40	4.2	40	78	2	158	25	26	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50764385--50764441	30	1.9	29	85	3	78	59	3	0	36	1.14
50764652--50764710	30	1.9	30	86	3	82	28	22	1	47	1.61
50764652--50764720	30	2.3	31	82	7	79	28	20	4	46	1.70
50767688--50767724	19	2.0	18	94	5	65	59	13	5	21	1.54
50770893--50770946	27	2.0	27	85	0	72	38	5	14	40	1.70
50772494--50772712	40	5.5	39	89	2	262	24	28	23	24	2.00
50773985--50774009	13	1.9	13	100	0	50	0	16	0	84	0.63
50774431--50774651	49	4.4	50	81	2	248	26	17	24	30	1.97
50774431--50774651	101	2.2	98	83	4	255	26	17	24	30	1.97
50774419--50774664	49	4.9	50	79	4	237	26	17	25	30	1.97
50776940--50777022	42	2.0	42	85	0	112	24	22	33	19	1.97
50776961--50777040	42	1.9	42	81	0	97	25	22	32	20	1.98
50778090--50778134	15	3.0	15	76	0	54	4	22	15	57	1.56
50792059--50792159	51	2.0	52	98	2	195	35	8	11	43	1.73
50792868--50792910	5	8.6	5	100	0	86	81	0	0	18	0.69
50795111--50795242	33	4.0	33	93	0	210	17	7	40	34	1.78
50798307--50798415	50	2.2	50	80	8	123	40	7	17	34	1.77
50800654--50800717	31	2.1	31	96	0	119	15	20	9	54	1.68
50801060--50801093	17	2.0	17	100	0	68	29	23	11	35	1.90
50807003--50807286	40	7.1	40	91	0	417	42	8	15	33	1.77
50807294--50807328	18	1.9	18	94	0	61	31	14	20	34	1.92
50807835--50807866	16	2.0	16	100	0	64	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50808038--50808131	44	2.1	44	90	4	143	35	25	5	34	1.79
50808113--50808183	16	4.4	16	89	0	106	28	26	7	38	1.82
50810026--50810076	21	2.4	21	100	0	102	31	0	17	50	1.46
50811230--50811277	19	2.6	19	86	3	71	35	2	14	47	1.56
50815138--50815185	19	2.6	19	86	3	71	35	2	14	47	1.56
50820538--50820569	17	1.9	16	93	6	55	28	28	18	25	1.98
50821779--50821992	45	4.7	46	87	2	234	17	20	16	45	1.86
50826987--50827155	40	4.2	40	80	4	173	23	26	21	28	1.99
50834921--50835088	40	4.2	40	80	4	171	23	25	22	28	1.99
50838529--50838735	40	5.2	39	88	5	283	23	20	28	27	1.99
50838525--50838735	80	2.7	79	89	2	318	23	20	28	27	1.99
50846686--50846933	40	6.2	40	92	1	383	22	20	29	27	1.99
50850290--50850492	39	5.2	39	89	0	262	23	31	20	24	1.98
50850320--50850492	39	4.4	39	92	0	274	23	31	19	24	1.98
50852391--50852558	40	4.2	41	79	5	175	25	22	27	25	2.00
50855315--50855407	38	2.5	38	94	1	161	33	10	13	41	1.80
50864294--50864333	2	20.0	2	94	0	71	47	0	2	50	1.14
50870657--50870685	2	14.5	2	100	0	58	51	0	0	48	1.00
50873589--50873628	21	1.9	21	94	0	71	20	32	37	10	1.85
50876231--50876329	28	3.5	29	83	6	114	30	27	15	27	1.96
50884237--50884335	28	3.5	29	83	6	114	30	27	15	27	1.96
50885974--50886197	48	4.6	49	79	3	240	24	27	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50885974--50886202	95	2.4	97	84	5	295	25	27	15	31	1.96
50887739--50887997	140	1.8	140	82	5	335	25	28	17	27	1.98
50887877--50888010	47	2.9	44	76	11	135	27	27	16	28	1.97
50888569--50888663	34	2.8	34	82	3	111	29	23	21	26	1.99
50888662--50888710	18	2.7	18	74	0	53	38	16	18	26	1.91
50889081--50889170	27	3.3	27	82	0	126	21	16	18	43	1.88
50889081--50889197	54	2.2	53	80	7	128	25	16	17	40	1.90
50891841--50891888	25	1.9	25	86	0	69	33	25	16	25	1.96
50892001--50892100	24	4.2	24	89	1	148	32	22	20	26	1.98
50898889--50899067	46	3.9	46	81	10	220	20	22	29	27	1.98
50898888--50899059	93	1.8	93	93	0	299	20	22	30	27	1.98
50904984--50905014	16	1.9	16	93	0	53	35	22	0	41	1.54
50904981--50905020	20	2.0	20	85	0	53	37	22	0	40	1.54
50905204--50905454	55	4.7	55	80	7	234	22	24	17	35	1.95
50905248--50905448	108	1.8	110	87	4	300	23	24	17	33	1.96
50908843--50908906	21	3.3	21	64	20	57	26	10	12	50	1.73
50908832--50908907	37	2.1	37	97	0	143	25	10	13	51	1.72
50911134--50911309	46	3.8	46	76	12	189	19	19	29	30	1.97
50911131--50911301	93	1.8	93	91	2	281	19	20	29	29	1.97
50913832--50914046	92	2.3	90	82	4	234	26	20	31	22	1.98
50913829--50914086	46	5.6	45	77	11	206	25	19	31	23	1.98
50917563--50917713	40	3.8	40	77	13	134	27	23	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50917599--50917729	40	3.3	40	79	2	156	25	23	27	23	2.00
50924103--50924159	25	2.2	26	93	3	98	35	3	24	36	1.73
50925774--50925913	27	5.2	27	88	2	183	17	24	22	35	1.96
50925774--50925913	54	2.6	55	89	2	203	17	24	22	35	1.96
50934202--50934240	10	3.8	10	86	3	51	33	2	0	64	1.08
50935441--50935477	2	18.5	2	94	0	65	45	0	2	51	1.15
50937761--50937797	20	2.0	19	85	15	51	5	37	8	48	1.56
50939545--50939582	18	2.2	18	90	4	60	18	0	0	81	0.69
50939545--50939574	6	5.0	6	100	0	60	16	0	0	83	0.65
50945694--50945828	29	4.7	29	85	5	157	24	31	15	28	1.96
50945669--50945827	57	2.8	58	81	1	176	23	33	15	27	1.95
50953734--50953836	29	3.6	29	91	0	161	25	33	15	26	1.95
50953705--50953836	58	2.3	58	83	0	165	25	34	15	25	1.95
50959219--50959281	31	2.0	31	90	0	99	30	15	30	23	1.96
50961843--50961898	25	2.2	25	84	9	78	35	1	5	57	1.32
50966861--50966949	28	3.1	29	85	6	103	31	11	26	30	1.91
50974278--50974393	58	2.0	58	86	5	164	46	6	18	28	1.73
50974581--50974658	36	2.2	36	100	0	156	43	2	19	34	1.64
50976036--50976430	47	8.3	47	90	2	574	32	8	30	28	1.87
50979383--50979555	90	1.9	92	80	7	208	39	14	8	37	1.77
50979697--50979867	10	18.4	9	66	14	55	64	2	1	31	1.13
50979802--50979867	19	3.6	18	75	10	62	66	3	1	28	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50980101--50980189	29	3.1	29	68	13	69	31	7	1	59	1.33
50980212--50980251	18	2.2	18	86	8	55	30	0	5	65	1.14
50982275--50982438	80	2.0	80	100	0	328	32	12	19	35	1.89
50983897--50983959	32	2.0	32	84	6	83	53	7	3	34	1.46
50989502--50989578	13	5.9	13	83	6	93	29	5	25	38	1.78
50991330--50991377	25	1.9	25	86	0	69	33	25	16	25	1.96
50991421--50991479	20	3.0	20	97	0	109	37	10	20	32	1.86
50991425--50991479	11	5.4	11	70	16	55	38	10	20	30	1.87
50991530--50991648	24	5.0	24	88	5	170	28	21	22	26	1.99
50991530--50991648	47	2.5	48	89	5	170	28	21	22	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325