genome.fa.s4.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  208  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64528132--64528235	19	5.7	18	72	20	65	66	5	0	26	1.20
64529355--64529396	17	2.6	17	88	7	61	21	2	4	71	1.16
64529472--64529514	17	2.4	17	84	7	50	34	4	2	58	1.32
64530066--64530103	15	2.5	16	83	12	53	50	15	7	26	1.72
64531328--64531369	18	2.3	18	95	0	75	9	30	35	23	1.87
64533857--64533901	20	2.2	21	84	4	56	26	26	15	31	1.96
64533937--64534022	30	2.9	30	76	11	79	29	20	17	32	1.96
64543230--64543378	80	1.9	80	81	2	183	22	30	24	22	1.99
64543271--64543378	40	2.7	38	85	8	128	21	29	25	23	1.99
64551348--64551496	80	1.9	80	81	2	183	22	30	24	22	1.99
64551389--64551496	40	2.7	38	85	8	128	21	29	25	23	1.99
64555528--64555582	21	2.6	21	76	0	56	34	30	9	25	1.87
64556431--64556468	18	2.1	18	85	9	51	28	26	2	42	1.69
64558991--64559074	24	3.5	24	95	1	141	27	25	25	22	2.00
64558991--64559085	48	1.9	48	87	4	136	27	26	22	24	2.00
64559307--64559386	31	2.6	31	84	2	108	32	16	23	27	1.96
64560744--64561001	141	1.8	141	82	0	336	34	11	24	29	1.91
64569264--64569370	27	3.9	27	83	9	128	36	22	24	16	1.94
64569262--64569370	54	2.0	54	85	3	148	36	22	24	16	1.94
64571319--64571544	40	5.7	40	95	1	357	26	27	22	23	2.00
64571293--64571544	80	3.2	79	90	3	366	26	26	22	24	2.00
64573315--64573481	40	4.2	40	79	2	158	23	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64581326--64581493	40	4.2	40	80	7	162	23	26	23	26	2.00
64581342--64581493	80	1.9	80	83	5	200	23	26	23	26	2.00
64587712--64587753	19	2.3	19	83	4	59	61	4	0	33	1.17
64587751--64587795	12	3.9	11	80	8	54	64	2	6	26	1.30
64588404--64588430	2	13.5	2	100	0	54	48	0	0	51	1.00
64593156--64593240	40	2.1	41	86	4	118	48	2	0	49	1.14
64594584--64594624	5	8.2	5	100	0	82	58	0	0	41	0.98
64595007--64595097	22	4.3	22	72	15	68	54	9	14	20	1.68
64597119--64597190	32	2.2	33	85	7	94	27	5	16	50	1.68
64597575--64597611	19	1.9	19	88	0	56	51	0	0	48	1.00
64597646--64597682	16	2.3	16	86	13	58	40	0	0	59	0.97
64597708--64597749	22	1.9	22	85	0	57	47	0	0	52	1.00
64604549--64604619	35	2.0	35	89	5	108	40	8	23	26	1.83
64606530--64606582	18	2.9	18	80	20	65	77	1	15	5	1.04
64607739--64607830	29	3.2	28	85	3	112	32	16	28	22	1.96
64607741--64607820	28	2.8	28	88	1	106	33	15	27	23	1.94
64607739--64607843	29	3.7	29	79	7	106	29	16	31	22	1.96
64615648--64615740	29	3.2	29	87	0	123	33	16	27	22	1.95
64615648--64615753	29	3.7	29	82	5	115	30	16	31	22	1.95
64618567--64618606	21	2.0	20	85	14	55	47	7	2	42	1.45
64622202--64622361	41	3.9	41	81	2	205	29	28	21	20	1.98
64628713--64628751	20	1.9	21	84	5	53	33	10	23	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64629245--64629375	28	4.7	28	91	0	208	24	12	33	29	1.92
64634055--64634108	26	2.1	26	100	0	108	29	7	33	29	1.85
64637210--64637284	28	2.7	28	87	0	105	22	18	36	22	1.95
64638540--64638592	18	2.9	18	94	0	88	43	11	16	28	1.83
64641590--64641690	28	3.5	28	86	6	114	29	13	26	29	1.94
64644600--64644787	40	4.7	40	88	3	281	24	22	27	26	2.00
64644600--64644826	79	2.9	80	83	6	284	25	22	26	25	2.00
64653901--64654109	40	5.2	40	91	4	291	24	26	21	27	1.99
64661916--64662119	39	5.2	40	89	7	296	24	23	26	25	2.00
64661916--64662119	79	2.6	77	88	6	297	24	23	26	25	2.00
64665123--64665147	2	12.5	2	100	0	50	52	0	0	48	1.00
64672258--64672360	29	3.6	27	81	5	98	29	33	16	21	1.95
64674254--64674477	40	5.6	40	81	3	252	25	23	25	26	2.00
64674258--64674477	83	2.7	80	83	5	248	25	23	25	25	2.00
64686521--64687154	345	1.8	345	97	0	1205	42	17	17	22	1.89
64693635--64693895	39	6.7	39	86	7	318	27	21	25	25	1.99
64693687--64693928	78	3.1	77	83	9	235	28	21	25	24	1.99
64699293--64699483	40	4.8	39	78	4	134	24	22	28	24	1.99
64699345--64699483	40	3.5	39	82	2	154	25	23	28	22	1.99
64699293--64699476	79	2.3	81	81	6	198	24	22	28	24	2.00
64701088--64701248	39	4.2	39	89	2	236	24	19	31	25	1.98
64701099--64701247	77	1.9	77	91	2	246	24	20	30	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64701712--64701759	15	3.2	15	74	11	53	58	12	14	14	1.64
64704707--64704829	46	2.7	46	88	3	187	32	26	18	21	1.97
64707159--64707236	25	3.2	25	66	23	76	32	30	3	33	1.76
64707108--64707424	47	6.7	47	86	7	433	29	31	7	32	1.84
64707108--64707424	96	3.3	94	87	6	442	29	31	7	32	1.84
64711147--64711625	43	11.1	43	94	0	832	32	31	22	13	1.92
64711608--64711819	40	5.2	42	82	4	211	25	27	22	24	2.00
64713795--64713872	25	3.2	25	66	23	76	32	30	3	33	1.76
64713744--64714060	47	6.7	47	86	7	433	29	31	7	32	1.84
64713744--64714060	96	3.3	94	87	6	442	29	31	7	32	1.84
64719127--64719238	27	4.2	28	84	10	137	16	24	21	38	1.93
64719127--64719238	54	2.1	53	86	5	154	16	24	21	38	1.93
64725313--64725345	2	16.5	2	100	0	66	51	0	0	48	1.00
64729836--64729947	27	4.2	28	84	10	137	16	24	21	38	1.93
64729836--64729947	54	2.1	53	86	5	154	16	24	21	38	1.93
64736954--64737056	27	3.8	26	75	12	91	19	24	19	36	1.94
64746394--64746584	40	4.8	39	78	7	172	24	24	28	23	2.00
64746394--64746577	79	2.3	81	83	7	225	24	24	27	23	2.00
64746445--64746610	79	2.1	79	79	4	183	25	23	27	24	2.00
64750937--64751030	38	2.4	39	82	1	118	29	21	25	23	1.99
64752673--64752736	27	2.4	28	81	5	78	25	23	23	28	2.00
64754483--64754723	108	2.4	100	80	16	266	28	26	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64754483--64754612	50	2.7	48	81	12	151	29	26	16	27	1.97
64754648--64754774	41	2.8	48	74	23	137	27	27	18	26	1.98
64757221--64757276	15	3.7	15	74	25	64	62	10	14	12	1.55
64760919--64761177	40	6.5	40	92	2	416	30	19	24	24	1.98
64760908--64761211	40	7.6	40	88	4	254	29	20	25	25	1.99
64760939--64761218	120	2.3	120	87	7	383	30	19	24	25	1.98
64763765--64764205	49	8.9	48	80	8	431	27	26	20	26	1.99
64763761--64764205	151	3.0	149	87	4	612	27	26	20	26	1.99
64763766--64764198	100	4.3	100	91	1	638	27	26	20	26	1.99
64767231--64767257	13	2.1	13	100	0	54	14	37	33	14	1.88
64776597--64776706	56	2.0	56	92	0	184	30	11	23	34	1.91
64778862--64778975	41	2.8	41	81	4	113	37	23	15	22	1.93
64781704--64781797	6	15.3	6	73	16	77	48	11	17	22	1.78
64781712--64781797	25	3.5	25	85	4	104	48	10	17	23	1.77
64781978--64782017	2	20.0	2	100	0	80	50	0	0	50	1.00
64782336--64782800	27	17.2	27	84	1	527	41	7	20	29	1.80
64782336--64782800	54	8.6	54	85	1	581	41	7	20	29	1.80
64782793--64782946	54	2.9	53	80	6	159	29	10	22	38	1.87
64782793--64782946	27	5.7	27	78	2	141	29	10	22	38	1.87
64783750--64783788	15	2.6	15	100	0	78	35	33	15	15	1.89
64784878--64784911	18	1.9	17	88	5	50	52	11	11	23	1.70
64784899--64784998	6	16.3	6	74	12	78	51	11	17	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64784931--64784998	25	2.7	25	88	0	100	48	13	17	20	1.80
64785117--64785176	27	2.3	26	82	2	66	36	20	21	21	1.95
64785186--64785217	2	16.0	2	100	0	64	0	0	50	50	1.00
64785543--64785995	27	16.8	27	84	3	522	41	8	20	29	1.81
64785543--64785995	134	3.4	134	86	4	601	41	8	20	29	1.81
64786016--64786141	27	4.7	27	86	1	155	28	5	23	42	1.76
64785989--64786141	54	2.8	53	79	6	157	28	6	22	42	1.78
64785989--64786141	27	5.7	26	81	5	137	28	6	22	42	1.78
64801693--64801799	42	2.5	42	96	0	196	28	14	33	22	1.94
64801807--64801876	27	2.5	28	86	2	97	27	14	25	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325