genome.fa.s4.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  143  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43726771--43726860	27	3.3	27	85	0	108	40	17	10	32	1.83
43726855--43726915	27	2.3	27	79	0	68	32	27	8	31	1.86
43726866--43727076	27	7.8	27	85	2	253	29	23	8	38	1.83
43727001--43727224	27	8.2	27	75	10	89	37	19	8	34	1.81
43726853--43727088	54	4.4	54	82	4	181	31	23	7	37	1.83
43727028--43727226	27	7.3	27	73	8	125	38	19	8	33	1.82
43727271--43727348	27	2.9	27	79	11	97	38	21	17	21	1.93
43728585--43728661	9	7.9	9	75	16	73	35	7	20	36	1.82
43728583--43728654	11	7.1	11	73	17	75	36	9	19	34	1.85
43728583--43728665	20	4.2	20	95	0	148	36	10	19	33	1.86
43728718--43728858	47	3.0	47	87	8	189	28	21	22	26	1.99
43728718--43728858	24	6.0	24	88	7	200	28	21	22	26	1.99
43729051--43729114	31	2.1	31	90	0	101	35	15	23	25	1.94
43731903--43731992	27	3.3	27	85	3	119	40	17	10	32	1.83
43731903--43732008	54	2.0	53	81	9	126	38	19	10	31	1.86
43731998--43732206	27	7.8	27	89	1	271	28	22	9	39	1.85
43732104--43732354	27	9.2	27	77	10	100	36	19	8	35	1.83
43731944--43732217	81	3.4	81	75	8	218	30	22	9	37	1.85
43732104--43732278	54	3.2	54	79	4	165	33	20	8	37	1.83
43732158--43732356	27	7.3	27	74	8	134	37	19	9	33	1.83
43732401--43732478	27	2.9	27	77	11	88	35	21	20	21	1.96
43733630--43733677	25	1.9	25	86	0	69	33	25	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43733715--43733790	9	7.9	9	75	13	71	35	7	21	35	1.82
43733715--43733790	5	15.6	5	76	15	70	35	7	21	35	1.82
43733713--43733794	20	4.2	20	95	1	148	36	10	19	32	1.87
43733848--43733968	47	2.6	47	92	3	208	29	22	20	27	1.98
43733848--43733989	47	3.0	47	89	7	207	28	22	21	26	1.99
43733848--43733989	24	6.0	24	91	5	218	28	22	21	26	1.99
43734182--43734244	30	2.1	31	90	3	101	36	15	23	23	1.94
43737042--43737131	27	3.3	27	85	3	119	40	17	10	32	1.83
43737042--43737147	54	2.0	53	81	9	126	38	19	10	31	1.86
43737137--43737343	27	7.8	27	88	3	271	28	23	9	39	1.85
43737137--43737343	79	2.6	79	84	6	260	28	23	9	39	1.85
43737110--43737354	106	2.3	106	80	4	289	29	23	8	37	1.85
43737243--43737491	27	9.2	27	77	10	107	36	20	8	34	1.84
43737295--43737493	27	7.3	27	75	8	143	37	20	9	33	1.84
43737538--43737615	27	2.9	27	77	11	88	35	21	20	21	1.96
43738850--43738926	9	7.9	9	72	16	64	35	9	20	35	1.85
43738859--43738930	11	7.1	11	70	17	66	36	12	19	31	1.89
43738848--43738930	20	4.2	20	96	0	157	36	12	19	32	1.88
43738983--43739149	24	7.0	23	90	4	237	28	22	21	27	1.99
43738983--43739148	47	3.5	46	88	6	235	28	22	21	27	1.99
43738983--43739148	71	2.3	71	92	3	271	28	22	21	27	1.99
43739341--43739404	31	2.1	31	90	0	101	35	15	23	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43742212--43742309	26	3.7	27	78	14	96	40	20	8	30	1.81
43742212--43742315	52	2.0	52	81	9	122	39	20	8	31	1.83
43742305--43742515	27	7.9	27	84	5	250	28	23	8	39	1.84
43742493--43742664	27	6.3	27	73	10	116	38	20	9	31	1.84
43742709--43742785	27	2.9	26	74	12	84	36	22	19	22	1.95
43744023--43744099	9	7.9	9	72	16	64	35	9	20	35	1.85
43744032--43744103	11	7.1	11	70	17	66	36	12	19	31	1.89
43744021--43744103	20	4.2	20	96	0	157	36	12	19	32	1.88
43744157--43744322	24	7.0	23	86	7	219	28	21	22	27	1.99
43744157--43744321	71	2.3	70	90	4	251	27	21	22	27	1.99
43744157--43744321	23	7.0	24	88	6	239	27	21	22	27	1.99
43744514--43744577	31	2.1	31	87	0	92	34	15	23	26	1.95
43749332--43749402	28	2.5	28	84	4	90	28	12	26	32	1.93
43752946--43753086	40	3.5	40	87	2	196	24	30	21	23	1.99
43759346--43759382	18	2.1	18	100	0	74	29	16	16	37	1.90
43760211--43760260	24	2.1	24	96	0	91	16	22	22	40	1.91
43762554--43762588	16	2.2	16	100	0	70	22	28	20	28	1.98
43764597--43764818	78	2.8	78	89	2	320	22	29	22	24	1.99
43764637--43764818	39	4.7	39	92	1	303	22	29	21	26	1.99
43772684--43772863	38	4.7	39	88	4	285	22	28	21	27	1.99
43784171--43784354	39	4.6	39	82	4	201	23	22	28	26	1.99
43785739--43785849	29	3.9	29	83	1	134	27	15	33	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43785739--43785856	57	2.1	57	84	6	150	27	14	33	24	1.94
43788849--43788883	18	2.0	18	88	5	54	25	5	2	65	1.28
43793193--43793275	41	2.0	41	100	0	166	44	12	16	26	1.83
43794026--43794080	26	2.2	26	87	9	80	45	21	18	14	1.85
43794998--43795091	46	2.0	46	95	0	170	35	23	2	39	1.67
43795316--43795373	31	1.9	30	82	10	73	18	15	0	65	1.27
43799045--43799190	37	3.9	37	92	0	220	26	32	19	21	1.97
43799396--43799682	47	6.1	47	90	0	412	27	29	11	31	1.92
43799395--43799683	141	2.0	141	93	0	497	27	29	11	31	1.91
43811297--43811336	21	1.9	21	85	10	55	55	5	15	25	1.60
43821512--43821590	34	2.3	34	82	4	97	24	25	24	26	2.00
43827882--43827980	28	3.5	29	82	6	114	28	15	26	30	1.96
43837916--43837954	20	2.0	20	89	0	60	48	2	10	38	1.51
43840147--43840314	40	4.2	40	79	1	158	22	27	23	26	2.00
43840163--43840312	80	1.9	80	84	5	205	21	27	24	26	1.99
43848157--43848324	40	4.2	40	79	1	158	22	27	23	26	2.00
43848173--43848322	80	1.9	80	84	5	205	21	27	24	26	1.99
43854870--43854936	30	2.4	30	82	9	79	40	4	22	32	1.74
43859032--43859179	38	3.9	38	85	7	158	24	20	23	31	1.98
43867001--43867210	75	2.7	75	86	6	269	23	23	23	29	1.99
43867037--43867227	38	5.0	38	91	2	276	21	21	24	31	1.98
43870068--43870124	6	9.3	6	75	17	55	49	15	15	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43870264--43870325	31	2.0	32	90	3	99	33	19	25	20	1.96
43870271--43870411	67	2.0	67	85	5	183	32	21	26	19	1.97
43870341--43870392	27	2.0	26	84	3	68	34	21	26	17	1.95
43870676--43870761	27	3.2	26	86	4	118	24	20	15	39	1.91
43872699--43872732	18	1.9	17	88	5	50	52	17	11	17	1.73
43872720--43872807	6	14.3	6	75	17	74	46	14	19	19	1.84
43872720--43872807	19	4.8	18	74	16	74	46	14	19	19	1.84
43872729--43872807	31	2.5	31	87	0	113	46	13	20	18	1.83
43872947--43873008	31	2.0	32	90	3	99	33	19	25	20	1.96
43872954--43873094	67	2.0	67	85	5	183	30	20	29	19	1.97
43873323--43873678	27	13.2	26	85	3	343	23	20	17	38	1.93
43873329--43873676	81	4.3	81	88	0	507	23	20	18	37	1.94
43878727--43878756	14	2.1	15	93	6	53	20	26	23	30	1.98
43879474--43879537	33	2.0	32	84	9	85	35	1	0	62	1.05
43881772--43881977	49	4.3	47	73	8	150	27	27	17	26	1.98
43881806--43882119	49	6.6	49	68	14	160	25	28	17	28	1.98
43887336--43887453	37	3.2	37	89	3	177	22	33	20	24	1.97
43887571--43888298	47	15.3	47	92	3	1145	28	29	9	32	1.89
43887621--43887699	25	3.3	25	67	16	76	30	29	6	34	1.82
43887571--43888298	192	3.8	190	92	3	1153	28	29	9	32	1.89
43891630--43891662	2	16.5	2	100	0	66	48	0	0	51	1.00
43897640--43897803	71	2.3	71	100	0	328	18	28	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43897640--43897837	71	2.8	70	91	3	258	20	28	17	33	1.95
43904748--43904911	71	2.3	71	100	0	328	18	28	17	35	1.94
43904748--43904945	71	2.8	70	91	3	258	20	28	17	33	1.95
43909302--43909355	24	2.2	24	83	3	63	18	25	12	42	1.86
43911817--43912014	71	2.8	70	92	3	294	33	17	28	20	1.95
43911883--43912000	41	3.1	41	60	28	98	32	17	28	21	1.96
43911851--43912014	71	2.3	71	100	0	328	35	17	28	18	1.94
43919383--43919580	71	2.8	70	92	3	294	33	17	28	20	1.95
43919449--43919566	41	3.1	41	60	28	98	32	17	28	21	1.96
43919417--43919580	71	2.3	71	100	0	328	35	17	28	18	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325