genome.fa.s4.2.7.7.80.10.50.1000.306.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  306  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93470520--93470707	54	3.5	54	95	0	322	32	8	23	35	1.85
93471215--93471244	2	15.0	2	100	0	60	50	0	0	50	1.00
93480285--93480347	30	2.1	30	93	0	108	25	3	14	57	1.52
93480474--93480507	12	2.9	12	95	4	61	64	0	0	35	0.94
93482152--93482238	27	3.3	25	73	9	75	59	3	6	29	1.40
93482150--93482278	25	5.2	24	69	15	91	58	3	6	31	1.40
93482362--93482425	34	1.9	33	87	12	96	67	0	6	26	1.14
93482335--93482430	40	2.3	41	78	12	97	65	0	6	28	1.16
93485882--93485985	26	4.0	26	96	0	181	32	4	25	37	1.77
93487764--93488048	135	2.1	137	95	1	511	24	18	24	31	1.97
93491704--93491812	26	4.2	26	95	1	184	33	4	24	36	1.76
93493594--93493877	134	2.1	137	96	2	520	24	18	25	31	1.97
93500302--93500333	16	2.0	16	93	0	55	75	3	0	21	0.95
93500892--93500926	17	2.1	17	88	0	52	45	0	2	51	1.16
93500936--93500999	30	2.1	30	88	0	92	43	0	7	48	1.32
93500940--93501005	25	2.7	23	79	9	60	45	0	7	46	1.31
93504487--93504534	22	2.1	22	85	11	62	22	6	8	62	1.46
93504596--93504638	22	1.9	23	85	4	61	34	2	6	55	1.39
93504711--93504753	22	1.9	23	85	4	61	34	9	4	51	1.55
93505012--93505080	24	2.8	24	73	16	61	28	5	5	59	1.44
93506034--93506141	26	4.2	26	97	0	207	30	6	26	36	1.82
93506982--93507088	26	4.2	26	96	3	184	33	3	25	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93508566--93508618	26	2.0	26	85	7	72	37	22	15	24	1.92
93508864--93509137	136	2.0	137	98	0	532	24	18	24	31	1.98
93513391--93513441	22	2.4	22	87	12	79	31	50	3	13	1.60
93516819--93516886	26	2.6	26	81	6	75	33	7	11	47	1.68
93517775--93517918	56	2.6	57	94	2	247	28	16	21	33	1.95
93522892--93522948	22	2.6	23	86	8	75	33	8	0	57	1.29
93522938--93522990	25	2.2	23	83	12	63	26	11	3	58	1.49
93536257--93536477	75	3.0	73	89	2	318	27	16	24	31	1.96
93536257--93536477	73	3.0	73	88	4	318	27	16	24	31	1.96
93536077--93536625	234	2.4	231	82	9	634	28	16	21	34	1.95
93536330--93536831	159	3.0	159	75	14	469	28	15	20	35	1.94
93536384--93536560	86	2.0	86	82	8	216	26	14	19	38	1.91
93536471--93536634	73	2.2	74	86	4	233	29	14	19	36	1.92
93536810--93536845	14	2.6	14	90	0	54	25	16	5	52	1.65
93536821--93536991	89	1.9	89	84	5	229	28	18	19	32	1.96
93537137--93537279	52	2.8	52	85	5	175	32	23	16	27	1.96
93538624--93538682	28	2.1	28	96	0	109	55	15	13	15	1.69
93538905--93538963	23	2.6	23	87	12	79	32	8	0	59	1.28
93538909--93538964	26	2.2	24	87	6	76	33	8	0	57	1.30
93538953--93539005	25	2.2	23	83	12	63	26	11	3	58	1.49
93541316--93541435	61	1.9	63	83	5	154	35	11	14	39	1.82
93543236--93543495	3	89.3	3	72	12	105	59	3	8	29	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93545406--93545735	43	7.6	43	69	11	233	19	22	22	36	1.95
93545399--93545740	88	3.9	86	89	1	506	19	21	22	35	1.96
93545400--93545740	175	2.0	174	90	4	535	19	21	22	35	1.96
93549259--93549288	12	2.4	13	94	5	53	40	0	0	60	0.97
93550041--93550076	14	2.6	14	90	0	54	72	0	2	25	0.98
93550491--93550538	24	2.0	24	87	4	69	27	10	6	56	1.57
93550879--93550912	18	1.9	18	88	5	52	55	11	14	17	1.68
93554223--93554268	17	2.7	17	86	0	65	60	0	2	36	1.09
93554219--93554270	27	1.9	27	84	0	68	61	0	1	36	1.07
93557525--93557605	35	2.3	35	91	2	137	19	7	44	28	1.78
93557844--93557882	13	3.1	12	82	10	51	56	7	0	35	1.28
93557817--93557917	6	17.2	6	67	13	50	62	4	0	31	1.23
93559509--93559564	23	2.4	23	90	0	85	26	35	21	16	1.94
93562746--93562783	19	2.0	20	89	5	60	44	18	0	36	1.50
93567445--93567709	47	5.7	46	74	10	198	29	18	29	23	1.98
93567445--93567709	140	1.9	141	82	6	333	29	18	29	23	1.98
93568764--93568811	21	2.3	21	92	0	78	14	29	25	31	1.95
93571649--93571692	14	3.0	14	87	12	54	75	2	2	20	1.03
93571649--93571699	5	10.0	5	79	12	52	74	3	1	19	1.07
93571674--93571698	12	2.1	12	100	0	50	68	8	0	24	1.16
93576507--93576590	26	3.2	26	96	0	150	35	23	5	34	1.80
93578750--93578782	14	2.4	14	90	10	50	30	6	0	63	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93578825--93578903	3	26.0	3	83	7	97	29	3	1	65	1.17
93578849--93578913	34	1.9	34	90	6	105	24	3	3	69	1.17
93581546--93581591	23	2.0	23	95	0	83	45	13	2	39	1.55
93583918--93583999	40	2.0	40	100	0	164	30	9	19	40	1.84
93584671--93584705	15	2.2	16	90	10	54	25	51	8	14	1.70
93585278--93585306	5	5.8	5	100	0	58	20	58	20	0	1.39
93585619--93585680	3	21.3	3	78	15	60	30	3	0	66	1.08
93585626--93585672	12	3.9	12	91	0	76	29	2	0	68	1.02
93585628--93585680	24	2.2	24	90	6	81	32	3	0	64	1.12
93585619--93585673	12	4.5	12	88	2	74	29	1	0	69	0.99
93586007--93586039	15	2.1	16	88	11	50	69	0	0	30	0.88
93586272--93586330	3	19.7	3	77	6	57	32	3	3	61	1.29
93586470--93586514	3	15.0	3	100	0	90	33	33	0	33	1.58
93586513--93586566	3	18.0	3	78	14	58	29	1	1	66	1.12
93589727--93589863	40	3.4	40	81	0	139	32	11	20	35	1.89
93589827--93590058	79	3.0	78	89	2	358	31	14	21	32	1.93
93594103--93594144	21	2.0	21	100	0	84	33	19	14	33	1.91
93596137--93596164	3	9.3	3	100	0	56	32	0	0	67	0.91
93599336--93599465	63	2.1	63	91	0	206	24	23	30	21	1.99
93602427--93602532	34	3.1	34	86	1	149	33	17	24	24	1.97
93605983--93606151	45	3.8	45	94	0	284	45	19	13	21	1.84
93607604--93607656	25	2.2	24	83	10	63	64	1	1	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93608678--93608734	25	2.3	25	90	6	89	50	5	5	38	1.47
93608765--93608814	18	2.7	18	84	12	57	66	4	0	30	1.10
93609704--93609734	2	15.5	2	100	0	62	0	0	48	51	1.00
93611673--93611721	13	3.6	14	84	15	59	8	8	2	81	0.94
93612395--93612463	31	2.2	31	80	10	79	30	7	4	57	1.45
93612795--93612833	21	1.9	20	84	5	51	38	5	10	46	1.60
93625712--93626082	87	4.3	85	81	6	399	35	21	23	20	1.96
93625806--93626036	45	5.4	42	75	12	150	32	20	23	22	1.98
93625884--93626036	45	3.5	45	82	3	188	32	20	22	24	1.98
93625712--93626082	172	2.1	175	81	7	420	35	21	23	20	1.96
93626191--93626387	86	2.3	86	83	2	243	36	20	21	21	1.96
93627189--93627237	13	3.6	14	84	15	59	8	8	2	81	0.94
93627913--93627981	31	2.2	31	80	10	79	30	7	4	57	1.45
93628313--93628351	21	1.9	20	84	5	51	38	5	10	46	1.60
93631243--93631267	12	2.1	12	100	0	50	44	0	24	32	1.54
93633437--93633477	18	2.2	19	83	12	50	29	0	2	68	1.03
93634908--93635075	92	1.8	92	85	3	241	38	12	11	38	1.79
93637038--93637075	14	2.9	14	88	7	53	0	10	13	76	1.02
93641717--93641758	6	6.7	6	84	10	57	45	2	0	52	1.13
93643221--93643260	19	2.0	21	85	9	57	35	0	12	52	1.39
93644476--93644537	3	21.0	3	80	9	74	67	0	32	0	0.91
93644476--93644522	8	5.9	8	78	16	53	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93644476--93644538	32	2.0	32	87	6	92	66	0	33	0	0.92
93644574--93644636	14	4.4	14	75	13	58	68	0	31	0	0.90
93644579--93644636	19	3.4	17	76	17	50	65	0	34	0	0.93
93645075--93645133	30	1.9	31	89	3	93	67	3	5	23	1.26
93645085--93646125	147	7.2	133	68	20	344	55	6	8	29	1.54
93645356--93645411	29	1.9	29	82	7	69	64	3	5	26	1.32
93645394--93645426	16	1.9	18	88	11	52	66	6	6	21	1.35
93645510--93645545	12	2.8	13	87	4	56	75	0	2	22	0.94
93645071--93646133	301	3.6	290	82	10	1197	55	6	8	29	1.54
93645221--93646133	157	6.1	145	79	10	1004	55	6	7	29	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325