Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  237  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74296066--74296351
136
2.1
137
96
0
529
25
18
24
31
1.98
74299191--74299250
5
11.4
5
96
3
93
76
0
5
18
0.96
74304095--74304154
21
2.9
21
87
0
84
26
18
25
30
1.98
74304184--74304259
3
25.7
3
78
2
82
0
40
1
57
1.07
74304694--74304764
34
2.1
35
89
2
108
36
14
14
35
1.86
74310104--74310166
4
15.5
4
78
15
67
74
0
22
3
0.96
74310103--74310166
22
2.9
21
88
9
92
73
0
23
3
0.97
74310107--74310166
18
3.4
18
77
11
61
75
0
21
3
0.95
74320451--74320498
22
2.1
24
85
14
66
39
6
0
54
1.26
74321156--74321189
16
2.2
15
89
5
50
47
0
0
52
1.00
74327467--74327699
48
4.9
48
92
0
367
28
11
11
48
1.73
74330275--74330468
55
3.6
53
78
3
174
20
23
18
38
1.93
74330260--74330468
53
3.9
52
73
5
168
21
22
16
39
1.92
74331732--74331797
23
2.8
24
83
4
89
16
15
22
45
1.85
74334670--74334852
81
2.2
81
85
2
233
34
26
14
24
1.94
74334670--74334852
40
4.5
41
82
5
203
34
26
14
24
1.94
74350262--74350295
16
2.1
16
94
0
59
44
0
2
52
1.16
74350975--74351078
34
3.1
34
100
0
208
38
28
5
26
1.79
74352839--74354916
704
3.0
700
83
4
2599
30
21
13
34
1.92
74354435--74355395
484
2.0
484
85
3
1292
31
20
13
34
1.91
74354919--74358391
702
4.9
701
81
4
3826
31
22
12
34
1.91
74364619--74364702
42
2.0
42
100
0
168
21
28
16
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74377821--74378039
24
9.1
24
97
0
393
20
16
24
37
1.93
74385525--74385734
40
5.2
40
87
2
305
25
24
28
21
1.99
74389392--74389499
45
2.5
43
79
8
112
35
24
15
25
1.94
74390709--74392595
693
2.7
693
81
6
2106
30
22
12
34
1.91
74396811--74397054
40
6.1
40
89
1
339
26
28
22
22
1.99
74416911--74416987
24
3.2
24
75
10
95
53
25
2
18
1.57
74416905--74417006
47
2.2
47
98
0
195
49
26
2
21
1.64
74426953--74427002
6
8.2
6
82
4
64
34
14
16
36
1.88
74426937--74427009
31
2.4
31
84
6
87
36
12
16
34
1.86
74427471--74427546
33
2.3
33
88
0
116
17
39
21
22
1.92
74429129--74429158
15
2.0
15
93
0
51
43
13
10
33
1.77
74440593--74440624
14
2.1
16
88
11
50
34
0
18
46
1.49
74452583--74452626
16
2.7
17
86
10
65
40
0
2
56
1.11
74452737--74452778
2
22.0
2
90
9
70
47
0
0
52
1.00
74453881--74453996
51
2.2
53
83
4
137
21
21
16
40
1.91
74454115--74454158
18
2.4
18
92
0
70
31
13
15
38
1.87
74464306--74464337
16
2.0
16
100
0
64
31
18
6
43
1.75
74464880--74465008
55
2.3
55
82
0
141
19
20
31
28
1.97
74467958--74467985
13
2.2
13
100
0
56
17
35
32
14
1.90
74473855--74474057
40
5.1
39
85
7
248
22
19
29
28
1.98
74473851--74474061
80
2.7
80
87
1
309
23
19
28
27
1.99
74481942--74482145
40
5.1
40
87
1
275
22
20
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74481938--74482149
80
2.7
80
88
2
311
23
20
28
27
1.99
74490650--74490805
56
2.7
57
78
8
174
28
14
22
35
1.93
74492470--74492573
45
2.3
45
78
3
111
43
21
17
18
1.88
74495336--74495378
21
2.0
22
95
4
79
74
4
9
11
1.20
74500793--74500963
93
1.8
93
96
0
315
27
29
22
20
1.98
74500785--74500965
46
3.9
46
81
9
233
27
29
21
20
1.98
74503330--74503418
30
3.0
30
79
11
94
56
15
17
10
1.67
74503330--74503412
15
5.6
14
73
10
58
55
16
18
9
1.68
74503341--74503418
15
5.2
15
75
9
70
55
15
17
11
1.69
74506368--74506538
93
1.8
93
96
0
315
27
29
22
20
1.98
74506360--74506540
46
3.9
46
81
9
233
27
29
21
20
1.98
74511376--74511403
2
14.0
2
100
0
56
50
0
0
50
1.00
74512638--74512701
32
2.0
32
96
0
119
37
17
6
39
1.75
74514308--74514478
46
3.6
47
78
12
149
22
30
19
27
1.98
74516514--74516552
19
2.1
19
100
0
78
43
15
0
41
1.46
74517030--74517069
19
2.1
19
100
0
80
50
5
5
40
1.46
74531038--74531204
40
4.2
40
77
4
151
23
26
22
27
2.00
74531054--74531202
79
1.9
80
82
9
189
22
26
23
27
1.99
74541607--74541775
48
3.6
47
77
3
196
25
27
18
28
1.98
74545576--74545728
31
4.9
31
81
4
184
28
22
5
43
1.74
74545591--74545707
17
7.4
17
72
16
99
29
23
5
41
1.78
74545588--74545722
62
2.2
62
89
2
209
28
22
5
42
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74545631--74545723
14
6.1
14
70
15
60
29
21
4
45
1.71
74545752--74545805
5
10.2
5
84
11
72
37
20
1
40
1.63
74551228--74551267
2
19.5
2
94
5
71
50
2
0
47
1.14
74553056--74553116
26
2.3
26
97
0
113
16
16
9
57
1.64
74559930--74560089
52
3.1
53
73
16
145
44
0
11
43
1.44
74560357--74560403
25
2.0
23
87
8
67
61
6
0
31
1.21
74560383--74560421
19
2.0
20
90
5
62
71
7
0
20
1.10
74563629--74563660
13
2.4
13
94
5
55
59
15
0
25
1.36
74570140--74570390
53
4.8
52
71
21
175
44
1
11
42
1.49
74570125--74570390
107
2.5
104
87
4
381
44
1
12
42
1.49
74570145--74570398
27
9.6
26
67
18
114
44
1
12
41
1.50
74570241--74570308
26
3.0
21
70
24
57
42
0
14
42
1.46
74575825--74576202
48
7.9
48
78
2
319
26
28
16
29
1.97
74575825--74576202
96
3.9
96
89
1
560
26
28
16
29
1.97
74575821--74576202
144
2.6
144
80
3
403
26
27
16
29
1.97
74579419--74579510
45
2.0
45
100
0
184
26
15
15
43
1.85
74581913--74581991
30
2.6
30
85
2
104
40
10
6
43
1.64
74588010--74588339
48
6.9
48
76
6
283
24
27
18
29
1.98
74588010--74588328
96
3.3
95
80
6
315
23
27
18
29
1.98
74588010--74588339
144
2.3
144
82
2
394
24
27
18
29
1.98
74589431--74589471
17
2.3
18
80
16
50
65
4
0
29
1.13
74595994--74596085
48
1.9
47
86
2
130
26
30
16
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74602520--74602799
48
5.9
48
77
11
236
26
19
25
28
1.99
74613090--74613131
22
2.0
21
86
13
61
21
11
4
61
1.48
74616639--74616780
39
3.7
38
91
3
221
22
30
21
26
1.99
74624029--74624211
39
4.6
39
87
0
240
22
30
22
24
1.99
74632803--74632943
39
3.7
38
85
9
196
22
30
21
25
1.99
74640188--74640369
39
4.6
39
87
2
240
23
30
22
24
1.99
74647661--74647811
43
3.5
43
80
8
155
28
17
22
31
1.97
74649406--74649555
67
2.2
67
81
8
171
32
17
28
21
1.96
74649430--74649613
67
2.8
64
76
8
185
29
16
29
23
1.96
74652418--74652449
9
3.6
9
95
0
55
46
15
9
28
1.77
74652469--74652516
6
7.5
6
86
13
69
16
0
2
81
0.79
74652669--74652703
18
1.9
18
100
0
70
20
11
17
51
1.75
74659043--74659108
32
2.1
32
83
8
82
36
4
6
53
1.46
74661044--74661486
74
6.0
74
90
0
665
27
7
27
37
1.84
74661044--74661486
220
2.0
222
92
0
737
27
7
27
37
1.84
74665151--74665203
27
2.0
27
96
0
97
45
18
11
24
1.82
74667501--74667533
6
5.5
6
96
0
57
48
12
18
21
1.80
74673839--74673965
55
2.3
55
78
2
130
31
24
27
16
1.96
74679585--74679862
94
2.9
95
83
3
321
27
21
15
35
1.94
74679931--74679959
13
2.1
14
93
6
51
72
3
17
6
1.21
74681792--74681837
23
2.0
23
100
0
92
34
8
21
34
1.84
74687877--74687905
6
5.0
6
91
8
51
17
17
0
65
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74687877--74687905
11
2.5
12
94
5
51
17
17
0
65
1.27
74687897--74688006
57
1.9
58
85
9
154
32
15
5
46
1.69
74693615--74693697
43
1.9
43
85
0
112
22
20
20
36
1.95
74707972--74708039
34
2.0
34
88
5
102
22
11
16
50
1.77
74709364--74709450
16
5.4
16
90
0
129
39
5
27
27
1.79
74709432--74709524
44
2.1
46
86
8
129
32
4
26
36
1.76
74709610--74709745
61
2.3
57
81
8
148
50
3
0
44
1.24
74709708--74709770
12
5.4
12
73
21
55
49
3
0
47
1.17
74716580--74717596
508
2.0
504
93
1
1721
37
19
13
29
1.90
74717546--74717855
50
6.3
50
80
4
326
23
28
20
27
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325