genome.fa.s4.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  158  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48439107--48439166	27	2.3	26	82	2	66	36	20	21	21	1.95
48439927--48440000	26	2.8	27	85	4	80	31	8	18	41	1.80
48439927--48440104	27	6.7	26	85	5	171	28	8	21	41	1.83
48439953--48440131	27	6.7	27	84	3	209	28	8	21	40	1.83
48439924--48440131	81	2.6	80	83	4	233	28	9	21	40	1.84
48440124--48440252	27	4.8	27	90	0	170	37	10	22	29	1.87
48440082--48440297	80	2.7	79	74	6	218	34	9	22	33	1.86
48440124--48440252	54	2.4	54	89	1	197	37	10	22	29	1.87
48442837--48442900	31	2.1	31	96	0	119	25	14	21	39	1.91
48446482--48446697	38	5.2	38	69	20	148	30	23	15	30	1.95
48446527--48446737	47	4.7	47	81	11	262	31	22	15	30	1.95
48446492--48446695	85	2.4	85	96	0	372	29	24	15	30	1.96
48446527--48446770	132	1.8	132	88	1	373	31	22	15	30	1.95
48448233--48448300	28	2.5	28	92	2	111	20	10	25	44	1.83
48449475--48449570	44	2.2	44	98	1	185	41	18	18	20	1.90
48452491--48452552	27	2.3	27	83	10	90	20	9	25	43	1.83
48455680--48455854	6	28.8	6	72	17	139	48	13	17	20	1.80
48455680--48455829	24	6.2	24	77	9	162	49	13	16	20	1.79
48455680--48455817	73	1.9	73	95	0	249	49	13	16	21	1.79
48455972--48456057	26	3.3	26	88	3	100	36	24	22	17	1.95
48456256--48456441	27	7.0	27	81	1	205	24	19	19	36	1.95
48456454--48457106	27	24.2	27	81	10	676	40	9	22	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48456454--48457106	81	8.1	81	85	5	790	40	9	22	27	1.85
48460736--48460808	28	2.6	29	80	2	85	21	31	17	28	1.97
48473955--48474158	84	2.4	85	85	1	266	32	22	13	31	1.93
48474081--48474210	48	2.7	48	80	6	140	33	19	15	32	1.93
48478815--48478919	43	2.5	43	79	3	115	32	25	19	22	1.97
48480290--48480373	40	2.1	40	84	4	107	36	21	13	28	1.91
48484292--48484339	25	1.9	25	86	0	69	33	25	16	25	1.96
48484378--48484434	9	5.9	9	73	15	51	35	8	21	35	1.84
48484376--48484438	20	3.2	20	95	0	117	36	12	19	31	1.89
48484492--48484635	24	6.0	24	89	8	213	30	20	20	27	1.98
48484832--48484891	31	1.9	31	89	0	93	33	18	21	26	1.96
48488535--48488690	71	2.2	71	98	0	303	35	17	28	18	1.94
48496099--48496216	41	3.1	41	60	28	98	32	17	28	21	1.96
48496067--48496230	71	2.3	71	100	0	328	35	17	28	18	1.94
48498660--48498697	20	1.9	20	88	0	58	34	2	10	52	1.50
48500260--48500328	28	2.5	28	95	2	122	43	27	10	18	1.82
48506594--48506631	20	1.9	20	88	0	58	34	2	10	52	1.50
48508260--48508328	28	2.5	28	95	2	122	43	27	10	18	1.82
48512813--48512923	39	2.8	39	90	0	168	29	21	22	26	1.99
48512828--48512941	39	2.9	39	88	2	122	30	20	22	26	1.98
48514262--48514350	23	3.9	22	76	19	94	25	25	16	31	1.97
48516780--48516917	40	3.5	40	91	1	215	26	27	22	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48525230--48525318	23	3.9	24	70	14	62	21	23	19	35	1.95
48525268--48525335	22	3.0	22	77	12	66	23	25	20	30	1.98
48526572--48526629	30	1.9	30	96	0	107	18	25	31	24	1.98
48528044--48528094	13	4.1	13	73	19	54	35	25	5	33	1.80
48532142--48532240	42	2.4	42	85	0	144	20	25	28	26	1.99
48532969--48533105	68	2.0	68	95	0	247	29	21	19	28	1.98
48539957--48540194	49	4.8	49	86	2	296	26	18	26	28	1.98
48539957--48540189	99	2.3	101	85	2	310	26	18	26	29	1.98
48544246--48544409	71	2.3	71	100	0	328	18	28	17	35	1.94
48544246--48544443	71	2.8	70	91	3	258	20	28	17	33	1.95
48551684--48551791	40	2.7	38	85	8	128	21	29	25	23	1.99
48559754--48559861	40	2.7	38	85	8	128	21	29	25	23	1.99
48559713--48559861	80	1.9	80	81	2	183	22	30	24	22	1.99
48569487--48569543	9	5.9	9	73	15	51	35	8	21	35	1.84
48569485--48569547	20	3.2	20	95	0	117	36	12	19	31	1.89
48569600--48569744	25	6.0	24	85	8	172	29	20	22	27	1.98
48569600--48569724	25	5.1	26	89	4	174	31	20	20	28	1.97
48569600--48569744	47	3.0	48	80	9	170	29	20	22	27	1.98
48569940--48569998	31	1.9	30	86	3	82	33	18	20	27	1.96
48572823--48572893	24	3.0	24	82	12	76	19	14	33	32	1.92
48572833--48572903	24	3.0	24	87	0	88	21	12	32	33	1.91
48578001--48578035	15	2.3	15	95	0	61	20	25	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48581505--48581546	21	2.0	21	100	0	84	33	4	28	33	1.78
48582055--48582152	42	2.3	43	94	3	180	28	25	23	22	1.99
48582055--48582216	42	3.7	42	84	9	143	26	24	25	22	2.00
48583666--48583950	48	5.9	48	77	5	240	23	29	20	26	1.99
48586671--48586895	40	5.7	41	89	5	288	26	26	20	26	1.99
48589813--48589870	30	2.0	30	89	3	91	31	12	25	31	1.92
48592160--48592219	30	2.0	30	83	6	77	38	6	26	28	1.81
48592866--48593109	49	4.9	49	79	6	267	24	18	27	29	1.98
48600171--48600501	96	3.5	96	80	3	328	25	29	19	25	1.98
48600172--48600504	48	7.0	48	74	6	273	25	30	18	25	1.98
48607330--48607647	46	6.7	48	73	11	223	27	17	28	25	1.98
48607526--48607646	47	2.5	47	82	7	129	24	19	28	26	1.99
48614271--48614468	71	2.8	70	92	3	294	33	17	28	20	1.95
48614337--48614454	41	3.1	41	60	28	98	32	17	28	21	1.96
48614305--48614468	71	2.3	71	100	0	328	35	17	28	18	1.94
48621909--48622026	41	3.1	41	60	28	98	32	17	28	21	1.96
48621877--48622040	71	2.3	71	100	0	328	35	17	28	18	1.94
48627836--48627883	20	2.4	20	96	0	87	18	31	33	16	1.94
48634199--48634268	27	2.5	28	88	2	106	27	15	27	30	1.96
48638238--48638406	46	3.6	44	78	15	139	23	30	16	30	1.96
48639261--48639290	15	1.9	16	93	6	53	70	0	23	6	1.11
48643074--48643116	16	2.7	16	85	7	52	48	18	23	9	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48643337--48643421	29	3.0	29	85	1	118	24	17	30	27	1.97
48648735--48648829	29	3.3	29	80	2	102	21	15	33	29	1.94
48656687--48656789	29	3.5	28	79	7	91	20	16	33	29	1.94
48658022--48658386	49	7.7	47	88	4	491	29	30	7	32	1.84
48658073--48658150	25	3.2	25	66	23	76	32	30	3	33	1.76
48658215--48658297	27	3.3	27	68	22	88	33	30	3	32	1.75
48662125--48662427	43	7.1	43	96	1	524	32	32	22	13	1.92
48662420--48662581	40	4.0	42	84	1	170	25	27	22	24	2.00
48664508--48664868	47	7.7	47	88	5	523	29	31	7	31	1.86
48664559--48664636	25	3.2	25	66	23	76	32	30	3	33	1.76
48664508--48664868	140	2.5	142	89	4	426	29	31	7	31	1.86
48664513--48664868	189	1.9	185	91	2	525	29	31	7	31	1.86
48671451--48671672	46	4.8	46	79	9	204	22	31	19	26	1.98
48674605--48674689	20	4.3	20	89	1	127	43	15	5	35	1.71
48674823--48674914	23	4.0	23	78	4	87	38	19	19	22	1.94
48674823--48674887	24	2.8	24	79	6	73	38	16	20	24	1.93
48674877--48674921	23	2.0	23	95	0	81	42	22	20	15	1.89
48679785--48679992	40	5.2	40	90	1	285	27	27	21	23	1.99
48687666--48687872	40	5.2	40	90	2	294	26	28	21	23	1.99
48689906--48690036	30	4.5	30	86	8	171	32	13	25	28	1.94
48689906--48690036	58	2.2	58	86	4	174	32	13	25	28	1.94
48697857--48697987	30	4.5	30	86	8	171	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48697857--48697987	58	2.2	58	86	4	174	32	13	25	28	1.94
48700852--48701032	40	4.5	40	77	4	159	28	22	24	24	2.00
48700854--48701032	80	2.2	81	80	4	193	27	22	25	24	2.00
48708872--48709050	40	4.4	40	83	3	207	25	24	26	24	2.00
48708872--48709050	80	2.2	81	86	3	245	25	24	26	24	2.00
48708906--48709090	80	2.3	80	80	4	203	28	23	24	23	2.00
48708993--48709076	40	2.1	40	82	4	98	26	27	26	20	1.99
48717414--48717554	38	3.7	38	93	1	219	22	29	21	26	1.99
48731826--48731891	28	2.4	28	81	0	69	33	10	24	31	1.89
48731843--48731904	28	2.2	28	82	0	79	38	9	20	30	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325