genome.fa.s4.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  166  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51370254--51370332	15	5.4	14	75	10	61	8	18	13	58	1.62
51371867--51371921	15	3.7	15	81	13	78	60	10	16	12	1.60
51374871--51375039	92	1.8	91	96	1	311	28	28	21	21	1.98
51374866--51375035	46	3.7	45	81	11	220	28	28	21	21	1.99
51374868--51375055	46	4.1	46	73	18	151	28	28	20	21	1.98
51377418--51377473	15	3.7	15	81	9	78	58	10	17	12	1.61
51378662--51378832	93	1.8	93	91	2	281	28	28	21	21	1.98
51378657--51378829	46	3.7	47	78	13	196	29	27	20	21	1.98
51384157--51384324	46	3.6	46	77	13	191	29	28	19	22	1.98
51384160--51384330	93	1.8	93	91	0	279	29	28	19	22	1.98
51388560--51388654	27	3.5	27	81	2	102	37	21	17	23	1.94
51388689--51388738	23	2.2	23	86	13	68	24	14	20	42	1.88
51393444--51393582	46	2.9	46	81	9	138	22	30	20	26	1.98
51396111--51396150	15	2.7	15	88	7	55	57	17	10	15	1.64
51399788--51399960	46	3.7	46	77	13	201	22	20	27	29	1.98
51399785--51399955	93	1.8	93	93	0	297	22	20	28	28	1.98
51402391--51402511	43	2.7	44	84	7	147	24	28	17	29	1.97
51405343--51405483	24	5.9	24	83	6	178	31	31	14	22	1.94
51406077--51406101	2	12.5	2	100	0	50	52	0	0	48	1.00
51406813--51406846	17	2.0	17	94	0	59	38	5	0	55	1.24
51407843--51407907	27	2.4	27	86	0	94	40	20	21	18	1.92
51408766--51408807	16	2.6	16	82	17	52	42	4	11	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51411448--51411606	46	3.4	46	78	8	153	23	28	19	27	1.98
51411536--51411661	46	2.7	47	82	2	139	22	26	20	30	1.98
51415445--51415624	77	2.3	80	83	7	226	24	22	28	25	1.99
51415446--51415627	40	4.6	39	79	11	203	24	21	28	25	1.99
51421891--51422108	40	5.4	40	83	3	244	25	20	27	26	1.99
51428346--51428456	47	2.4	47	89	3	161	27	27	9	36	1.87
51428460--51428687	46	5.0	46	98	0	429	31	27	7	33	1.84
51431355--51431455	40	2.5	40	79	9	107	24	25	22	26	2.00
51432119--51432386	40	6.7	40	94	0	430	25	28	21	25	1.99
51434941--51435051	47	2.4	47	89	3	161	27	27	9	36	1.87
51435055--51435280	46	5.0	46	96	2	411	31	27	7	33	1.84
51441011--51441111	39	2.5	40	85	1	132	30	22	24	21	1.99
51441011--51441192	40	4.6	40	82	4	181	28	22	26	23	1.99
51443324--51443521	71	2.8	70	92	3	294	33	17	28	20	1.95
51443390--51443507	41	3.1	41	60	28	98	32	17	28	21	1.96
51443358--51443521	71	2.3	71	100	0	328	35	17	28	18	1.94
51450889--51451086	71	2.8	70	92	3	294	33	17	28	20	1.95
51450955--51451072	41	3.1	41	60	28	98	32	17	28	21	1.96
51450923--51451086	71	2.3	71	100	0	328	35	17	28	18	1.94
51460266--51460299	16	2.1	16	94	0	59	11	29	17	41	1.85
51462170--51462429	27	9.6	27	85	1	342	39	20	8	31	1.83
51462170--51462484	27	11.7	27	79	6	273	39	21	7	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51462476--51462904	27	15.9	27	87	2	578	35	18	20	25	1.95
51463333--51463397	22	3.0	22	80	8	78	20	23	23	33	1.97
51463556--51463657	27	3.8	26	84	5	105	19	23	19	37	1.94
51463556--51463657	54	1.9	53	81	2	123	19	23	19	37	1.94
51463802--51463967	31	5.4	31	91	0	242	21	16	12	49	1.78
51463817--51463966	6	24.3	6	70	15	92	22	16	13	48	1.81
51467713--51467743	15	2.1	15	93	0	53	19	3	25	51	1.62
51472378--51472443	28	2.3	29	86	2	89	30	33	12	24	1.91
51476713--51476806	28	3.3	29	85	2	111	27	34	13	24	1.93
51478654--51478822	40	4.2	40	80	4	173	23	26	21	28	1.99
51486685--51486853	40	4.2	40	80	4	173	23	26	21	28	1.99
51490141--51490219	40	2.0	40	92	0	131	26	22	25	25	2.00
51492627--51492790	71	2.3	71	100	0	328	18	28	17	35	1.94
51500161--51500324	71	2.3	71	97	0	310	18	28	18	34	1.95
51505925--51506027	29	3.6	28	80	5	116	29	33	16	21	1.95
51512891--51512993	29	3.6	28	80	5	116	29	33	16	21	1.95
51525950--51526168	46	4.7	46	71	11	169	29	26	20	24	1.99
51525958--51526127	93	1.8	93	84	5	236	28	25	21	24	1.99
51530204--51530232	10	2.9	10	100	0	58	41	31	6	20	1.79
51532735--51532935	101	2.0	99	85	1	267	29	26	18	25	1.98
51532922--51533081	68	2.4	64	76	10	160	27	28	15	29	1.96
51540770--51540808	21	1.9	20	84	5	51	25	28	33	12	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51541920--51542044	47	2.7	47	85	8	159	24	31	18	25	1.98
51546125--51546324	27	7.4	27	82	0	229	37	19	19	25	1.94
51546125--51546306	81	2.2	81	88	1	258	37	19	18	24	1.93
51547043--51547106	33	2.0	33	87	3	94	21	23	20	34	1.97
51549076--51549109	18	1.9	18	94	5	61	44	11	26	17	1.83
51553689--51553870	27	6.7	27	84	2	204	36	18	19	25	1.94
51553689--51553870	54	3.4	54	85	0	238	36	18	19	25	1.94
51553689--51553888	81	2.5	81	84	1	240	36	17	19	26	1.94
51553728--51553889	27	6.0	27	82	1	146	37	17	18	25	1.93
51554531--51554582	27	2.0	26	84	3	68	17	26	21	34	1.95
51554597--51554649	27	2.0	27	84	0	70	22	24	20	32	1.98
51554512--51554665	67	2.3	67	94	2	265	19	29	21	29	1.98
51567036--51567072	2	18.5	2	100	0	74	51	0	0	48	1.00
51570253--51570441	40	4.7	40	90	3	274	23	22	28	25	1.99
51573565--51573613	24	2.0	25	96	4	91	32	16	34	16	1.91
51578189--51578415	40	5.7	40	93	2	370	24	23	28	23	2.00
51578189--51578407	118	1.8	119	94	2	388	24	24	27	24	2.00
51588177--51588351	46	3.8	45	78	13	153	30	20	27	22	1.98
51599873--51599910	8	4.9	8	83	3	51	5	31	0	63	1.17
51607275--51607395	47	2.6	45	79	6	127	31	10	31	26	1.90
51607476--51607554	40	2.0	39	82	7	97	17	20	30	31	1.96
51613316--51613529	46	4.6	45	81	11	193	26	18	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51616019--51616146	40	3.2	40	78	4	116	25	22	27	24	2.00
51624079--51624208	40	3.3	39	83	4	163	23	25	28	23	1.99
51628139--51628273	29	4.7	29	86	3	155	23	31	15	29	1.95
51628085--51628274	58	3.3	58	77	4	179	24	33	16	26	1.96
51636124--51636258	29	4.7	29	86	3	155	23	31	15	29	1.95
51636070--51636259	58	3.3	58	77	4	179	24	32	16	26	1.96
51640955--51640992	18	2.1	18	90	0	58	21	10	0	68	1.19
51644260--51644290	11	2.8	11	95	0	53	35	12	19	32	1.90
51649505--51649727	46	4.8	45	80	8	207	27	17	30	24	1.97
51652038--51652206	40	4.2	40	80	4	173	23	26	21	28	1.99
51660113--51660295	40	4.6	40	80	4	176	23	26	22	27	1.99
51661935--51662098	71	2.3	71	98	0	319	18	27	17	35	1.94
51661935--51662132	71	2.8	70	91	3	267	20	27	17	34	1.95
51669479--51669665	71	2.7	68	93	5	281	18	28	18	34	1.95
51669502--51669665	71	2.3	71	100	0	328	18	28	17	35	1.94
51669502--51669699	71	2.8	70	92	3	276	20	28	17	33	1.95
51673596--51673662	35	1.9	34	81	3	80	73	0	20	5	1.04
51675119--51675231	42	2.7	42	90	0	163	28	24	15	31	1.95
51675202--51675325	47	2.7	46	86	2	167	29	24	16	29	1.97
51675350--51675496	31	4.7	31	88	3	208	27	26	18	27	1.98
51680311--51680407	42	2.3	42	91	3	151	29	25	14	29	1.95
51680526--51680641	31	3.7	31	87	4	171	26	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51680650--51680745	50	1.9	50	95	0	174	28	20	16	34	1.95
51684680--51684766	28	3.1	28	91	0	129	33	9	28	28	1.88
51685004--51685107	40	2.6	40	78	1	109	26	17	29	25	1.97
51691290--51691390	29	3.6	28	78	5	105	28	33	16	20	1.95
51699287--51699360	29	2.5	28	84	4	85	31	33	14	20	1.93
51701138--51701189	27	2.0	26	84	3	68	17	26	21	34	1.95
51701234--51701293	27	2.3	26	85	2	75	23	23	20	33	1.97
51708570--51708621	27	2.0	26	84	3	68	17	26	21	34	1.95
51711683--51711857	77	2.3	77	87	2	244	24	17	24	33	1.96
51715268--51715534	24	11.1	24	97	0	480	20	17	25	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325