genome.fa.s4.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  211  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65450177--65450353	40	4.4	40	81	9	182	26	21	25	26	1.99
65456971--65456996	13	2.0	13	100	0	52	30	0	7	61	1.24
65459182--65459344	24	6.8	24	97	0	299	20	17	26	35	1.95
65461630--65461806	40	4.4	40	84	7	207	25	22	25	26	2.00
65466158--65466190	13	2.6	13	90	4	50	48	12	0	39	1.40
65470622--65470661	20	2.0	21	90	5	64	15	17	50	17	1.79
65470995--65471035	21	2.0	21	85	0	55	14	29	24	31	1.95
65477679--65477805	48	2.6	51	83	12	158	25	29	17	27	1.97
65477779--65477893	46	2.5	44	84	6	142	25	29	18	26	1.98
65479767--65479802	16	2.2	16	95	0	63	58	11	5	25	1.54
65482692--65482740	17	2.8	18	74	22	50	24	18	22	34	1.96
65483563--65483728	40	4.2	40	77	8	144	25	21	27	24	1.99
65487774--65487941	40	4.2	40	83	0	156	21	26	24	27	1.99
65491563--65491594	12	2.7	12	100	0	64	6	6	0	87	0.67
65491197--65492324	379	3.0	379	99	0	2233	35	16	15	32	1.91
65491941--65491973	13	2.5	13	100	0	66	6	6	0	87	0.65
65492894--65493150	48	5.4	48	97	0	460	31	27	5	35	1.80
65496031--65496084	27	2.0	27	100	0	108	29	11	7	51	1.64
65497278--65497450	46	3.7	46	77	10	190	28	28	20	21	1.98
65497283--65497453	93	1.8	93	91	0	279	28	29	20	21	1.98
65502667--65502692	2	13.0	2	100	0	52	50	0	0	50	1.00
65502689--65502748	27	2.3	26	85	2	75	21	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65505926--65506028	29	3.6	28	80	5	116	29	33	16	21	1.95
65510220--65510284	29	2.2	29	97	0	121	29	16	27	26	1.97
65510385--65510417	2	16.5	2	93	0	57	45	0	3	51	1.16
65510681--65510725	23	2.0	23	100	0	90	26	6	26	40	1.81
65517173--65517275	29	3.6	28	80	5	116	29	33	16	21	1.95
65523982--65524008	10	2.7	10	100	0	54	33	29	7	29	1.85
65524575--65524634	27	2.3	26	85	2	75	21	21	20	36	1.95
65528698--65528753	27	2.1	27	96	0	103	60	7	8	23	1.51
65540053--65540107	20	2.8	19	76	15	51	23	7	16	52	1.68
65540810--65540879	35	2.0	35	97	0	131	40	7	22	30	1.81
65543286--65543338	20	2.7	20	82	2	63	9	22	24	43	1.83
65543304--65543346	20	2.2	20	91	0	68	13	25	20	39	1.90
65544586--65544703	23	5.0	24	89	9	172	27	22	21	28	1.99
65544759--65544838	9	8.2	9	71	15	61	31	20	13	35	1.91
65544757--65544839	20	4.2	20	92	0	139	30	19	14	36	1.91
65546081--65546146	27	2.4	27	90	7	98	21	24	19	34	1.96
65546201--65546252	27	1.9	27	88	7	79	36	11	11	40	1.78
65546291--65546443	27	5.7	27	88	1	209	31	6	19	42	1.77
65546261--65546443	81	2.3	79	86	5	242	31	7	19	42	1.78
65546356--65546514	53	3.0	52	81	5	140	37	6	19	36	1.77
65546498--65546580	38	2.2	38	82	2	103	36	7	31	25	1.83
65546471--65546602	65	2.0	64	84	4	167	35	8	28	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65546436--65546544	27	4.0	27	91	0	164	37	9	24	28	1.86
65546536--65546600	27	2.4	27	92	0	103	33	6	32	27	1.82
65546608--65546697	27	3.3	26	81	6	99	31	10	18	40	1.84
65546626--65546706	27	3.0	27	85	5	101	33	9	17	39	1.83
65549086--65549257	93	1.8	93	96	0	317	27	29	21	20	1.98
65549078--65549253	46	3.8	46	80	12	225	28	28	21	21	1.98
65551624--65551711	29	3.0	29	80	8	97	56	15	17	10	1.66
65551624--65551702	15	5.4	15	77	10	83	58	13	17	10	1.63
65551635--65551711	15	5.2	15	75	9	77	55	15	16	11	1.68
65554615--65554788	46	3.8	45	81	12	219	28	28	21	21	1.98
65554623--65554793	92	1.8	93	94	1	308	28	29	21	21	1.98
65554666--65554807	45	3.1	44	73	23	132	30	27	20	21	1.98
65556336--65556386	26	2.0	26	100	0	102	27	15	15	41	1.88
65564412--65564619	40	5.2	40	78	3	168	21	25	24	28	1.99
65564466--65564619	80	1.9	80	83	0	200	22	26	23	27	1.99
65568370--65568497	45	2.8	44	89	2	184	24	23	25	26	2.00
65576295--65576461	40	4.2	39	81	9	194	25	21	26	25	2.00
65578660--65578692	2	17.0	2	93	6	59	48	0	0	51	1.00
65579207--65579382	45	3.9	45	91	1	273	24	23	25	26	2.00
65583427--65583534	56	1.9	56	100	0	216	42	15	16	25	1.88
65587248--65587921	27	25.0	26	78	6	447	31	8	19	40	1.82
65587290--65587921	54	11.7	53	80	8	555	31	8	19	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65587281--65587927	81	8.0	81	80	8	554	30	8	19	40	1.82
65594470--65594647	6	28.8	6	72	16	123	49	14	17	19	1.80
65594490--65594647	25	5.5	31	69	23	121	48	14	17	19	1.82
65594493--65594584	25	3.7	25	89	0	139	48	15	17	18	1.81
65594482--65594644	87	1.9	87	93	0	281	48	14	17	19	1.81
65594527--65594646	62	1.9	62	94	0	213	46	15	19	19	1.84
65594549--65594619	19	3.8	19	83	10	101	46	16	19	16	1.84
65594814--65594865	2	26.0	2	96	0	95	50	1	0	48	1.12
65595194--65595446	27	9.4	27	82	6	230	24	18	19	37	1.94
65595194--65595443	54	4.6	54	84	2	297	24	19	19	36	1.95
65595198--65595440	81	3.0	81	87	3	321	24	19	19	36	1.95
65595426--65595905	27	17.8	27	79	7	150	31	8	21	39	1.83
65595482--65595930	108	4.2	108	90	0	603	30	9	21	39	1.84
65595480--65595930	27	16.7	27	84	1	528	30	9	21	39	1.84
65595563--65595937	108	3.5	108	95	0	635	30	8	21	39	1.83
65595536--65595930	27	14.6	27	86	0	547	30	8	20	39	1.83
65601522--65601713	27	7.2	27	82	4	165	38	21	8	32	1.83
65601522--65601697	54	3.3	53	79	3	183	38	20	8	32	1.83
65601710--65601782	26	2.8	26	72	4	76	26	16	23	34	1.95
65605514--65605657	40	3.6	40	83	5	157	32	25	16	25	1.96
65610462--65610551	45	2.0	45	100	0	180	42	15	2	40	1.59
65613567--65613726	29	5.5	30	88	8	222	27	25	13	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65613567--65613726	59	2.8	57	89	4	223	27	25	13	33	1.94
65620642--65620676	16	2.1	18	89	10	56	28	14	0	57	1.38
65621469--65621572	29	3.7	29	89	7	178	25	25	14	35	1.93
65621469--65621597	55	2.3	55	86	11	181	25	26	14	33	1.95
65621468--65621625	29	5.5	29	83	11	173	26	27	14	31	1.95
65623796--65623946	39	3.8	40	78	6	153	24	26	23	25	2.00
65626491--65626639	80	1.9	80	81	2	183	22	30	24	22	1.99
65626532--65626639	40	2.7	38	85	8	128	21	29	25	23	1.99
65629471--65629619	80	1.9	80	81	2	183	22	30	24	22	1.99
65629512--65629619	40	2.7	38	85	8	128	21	29	25	23	1.99
65636172--65636353	39	4.6	39	90	0	247	21	31	23	23	1.98
65636202--65636353	39	3.9	39	93	0	250	22	31	22	23	1.98
65645994--65646033	19	2.1	18	86	13	53	72	2	17	7	1.19
65647201--65647306	29	3.7	29	79	5	106	30	16	31	21	1.96
65656756--65656819	32	2.0	32	96	0	119	31	10	7	50	1.66
65659203--65659414	48	4.5	47	85	5	284	32	15	20	32	1.93
65659204--65659414	95	2.2	95	95	0	377	32	15	19	32	1.93
65659389--65659465	38	2.0	38	92	0	127	31	14	24	29	1.94
65662454--65662615	46	3.5	44	79	11	191	20	18	30	30	1.97
65668319--65668385	24	2.8	24	100	0	134	35	26	16	20	1.94
65671909--65671939	12	2.6	12	94	0	53	29	9	16	45	1.79
65676158--65676248	24	3.8	24	97	0	164	35	27	17	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65677861--65677937	29	2.7	29	77	0	82	22	18	35	24	1.96
65691347--65691449	46	2.2	48	85	3	138	35	13	24	26	1.92
65697684--65697948	47	5.6	47	89	1	386	30	14	22	32	1.94
65697673--65697953	95	3.0	95	87	1	393	30	14	21	32	1.93
65697684--65697948	142	1.9	142	95	0	476	30	14	22	32	1.94
65702096--65702279	40	4.6	39	75	6	138	26	23	27	22	2.00
65702136--65702324	80	2.4	81	77	4	186	23	24	29	22	1.99
65707408--65707566	39	4.1	39	91	0	237	24	21	30	23	1.99
65707421--65707596	78	2.2	78	85	3	228	23	24	30	21	1.99
65707415--65707596	39	4.6	39	88	1	204	24	23	30	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325