genome.fa.s4.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  106  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31310903--31310927	13	1.9	13	100	0	50	0	24	40	36	1.55
31312550--31312771	67	3.4	65	76	9	209	23	29	15	31	1.95
31312673--31312799	68	1.9	68	81	6	159	23	29	14	32	1.95
31315831--31316005	50	3.5	50	86	2	217	23	17	26	33	1.96
31317510--31317568	29	2.0	29	100	0	118	44	6	13	35	1.71
31322420--31322586	40	4.2	40	79	6	169	26	22	26	24	2.00
31330416--31330582	40	4.2	40	79	6	169	26	22	26	24	2.00
31338004--31338052	17	2.8	18	74	22	50	24	18	22	34	1.96
31338874--31339040	40	4.2	40	79	6	169	25	21	27	25	1.99
31341122--31341186	21	3.2	21	65	8	62	24	30	3	41	1.70
31341110--31341189	40	2.0	40	95	0	142	26	28	3	41	1.73
31350432--31350534	41	2.5	41	88	3	154	29	16	31	23	1.96
31352996--31353074	31	2.5	31	85	0	104	13	40	26	18	1.89
31356293--31356378	43	2.0	43	100	0	172	39	23	13	23	1.90
31357021--31357092	28	2.6	28	79	14	78	50	0	18	31	1.47
31357013--31357092	42	1.9	42	84	5	108	50	1	17	31	1.54
31357020--31357092	14	5.3	13	71	18	58	49	0	19	31	1.48
31357579--31357603	10	2.5	10	100	0	50	32	0	0	68	0.90
31358652--31358742	38	2.4	38	82	8	107	25	26	23	25	2.00
31366713--31366770	30	2.0	30	96	3	109	31	25	17	25	1.97
31370473--31370652	35	5.1	35	77	2	164	41	18	11	28	1.84
31375660--31375710	25	2.0	25	96	0	93	41	13	0	45	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31377410--31377489	15	5.4	15	76	7	74	56	15	18	10	1.66
31380396--31380527	46	2.8	47	78	5	142	28	29	21	21	1.98
31385429--31385590	35	4.6	35	79	3	164	42	17	9	29	1.82
31390207--31390250	23	2.0	22	82	8	54	36	20	22	20	1.95
31394512--31394551	20	2.0	21	85	14	57	27	5	10	57	1.52
31394176--31394661	269	1.8	269	88	2	753	33	14	17	34	1.90
31399359--31399412	27	2.0	27	100	0	108	37	14	25	22	1.93
31400608--31400632	12	2.1	12	100	0	50	24	0	28	48	1.52
31401306--31401662	48	7.9	48	72	14	249	29	13	23	32	1.93
31401354--31401515	85	1.9	86	81	1	200	29	11	24	34	1.91
31401279--31401657	133	2.9	133	89	1	546	29	13	24	32	1.93
31401489--31401686	85	2.3	85	94	0	342	28	15	26	29	1.96
31401541--31401685	38	3.6	38	75	15	155	28	15	26	28	1.96
31401627--31401701	38	2.0	38	83	0	96	29	17	28	25	1.97
31404098--31404139	15	2.8	15	88	0	66	16	16	14	52	1.75
31406819--31407112	38	7.0	38	69	20	167	30	15	23	30	1.95
31406856--31407067	47	4.7	47	77	10	244	31	15	22	31	1.95
31406899--31407105	85	2.4	85	92	0	351	30	14	23	30	1.95
31424184--31424248	29	2.2	29	97	0	121	29	16	27	26	1.97
31427243--31427279	19	1.9	19	88	0	56	32	35	0	32	1.58
31428421--31428618	99	2.0	99	91	0	324	41	21	10	26	1.85
31432039--31432189	40	3.8	40	84	1	194	27	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31432039--31432230	81	2.4	81	84	0	233	26	18	22	32	1.97
31432053--31432230	40	4.4	41	82	2	119	26	18	23	32	1.97
31434527--31434722	40	4.9	40	90	4	276	28	21	25	25	1.99
31434527--31434750	40	5.6	39	87	6	226	27	21	25	25	1.99
31443762--31443931	45	3.7	47	77	17	169	27	29	21	21	1.99
31443762--31443931	93	1.8	93	94	1	306	27	29	21	21	1.99
31444350--31444409	30	2.0	30	90	0	93	30	25	8	36	1.85
31445222--31445325	54	1.9	54	88	0	154	26	27	26	18	1.98
31446160--31446193	18	1.9	18	88	5	52	29	17	11	41	1.85
31447422--31447523	28	3.7	28	93	2	170	28	33	14	23	1.94
31451911--31452339	50	8.5	50	77	3	351	31	25	17	26	1.97
31451911--31452343	101	4.3	100	77	6	419	30	25	17	26	1.97
31451903--31452343	151	2.9	151	89	2	661	30	24	18	26	1.98
31453804--31453843	2	20.0	2	100	0	80	50	0	0	50	1.00
31458702--31458731	16	1.9	15	93	6	51	33	23	0	43	1.54
31458929--31459375	50	8.9	50	78	4	416	29	24	18	27	1.98
31458935--31459371	151	2.9	151	88	1	635	29	24	18	27	1.98
31461754--31461944	80	2.4	80	86	6	271	28	19	25	26	1.99
31461760--31461944	40	4.6	40	87	6	243	28	20	25	25	1.99
31469295--31469478	40	4.6	40	78	4	147	22	24	29	23	1.99
31480056--31480197	40	3.6	39	90	5	207	25	28	24	21	1.99
31483707--31483820	39	2.9	39	92	1	183	23	32	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31490874--31490987	39	2.9	39	92	1	183	23	32	20	23	1.98
31500959--31500988	14	2.1	14	100	0	60	26	6	33	33	1.83
31504096--31504279	40	4.6	39	75	6	138	26	23	27	22	2.00
31504136--31504324	80	2.4	81	77	4	186	23	24	29	22	1.99
31512190--31512373	40	4.6	39	75	6	138	26	23	27	22	2.00
31512230--31512418	80	2.4	81	77	4	186	23	24	29	22	1.99
31520420--31520669	40	6.3	40	81	6	296	28	26	22	23	1.99
31520420--31520669	79	3.2	80	90	4	375	28	26	22	23	1.99
31525766--31525847	42	2.0	42	90	2	130	30	28	17	24	1.97
31527936--31528035	41	2.5	41	86	4	141	34	25	19	22	1.96
31532962--31533022	30	2.0	30	83	0	77	31	22	8	37	1.84
31534568--31534610	19	2.3	19	84	4	52	23	2	2	72	1.08
31534603--31534634	15	2.2	15	94	5	57	31	0	0	68	0.90
31534938--31534991	25	2.1	26	86	10	76	48	7	3	40	1.49
31538504--31538573	27	2.5	28	90	2	115	31	24	14	30	1.94
31544041--31544174	66	2.0	66	82	5	164	45	19	22	12	1.84
31544461--31544574	43	2.7	43	82	5	140	35	27	14	22	1.94
31544461--31544593	43	3.1	42	79	6	133	34	25	15	24	1.94
31544638--31544740	43	2.4	43	85	0	134	24	16	24	34	1.95
31548858--31548961	51	2.0	51	100	0	208	37	1	26	33	1.68
31553650--31553728	25	3.3	25	66	16	76	31	29	5	34	1.79
31553600--31553998	49	8.3	49	95	1	666	29	29	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31560386--31560451	27	2.4	28	92	2	107	25	13	28	31	1.94
31563626--31563665	13	3.2	13	86	10	57	77	5	0	17	0.94
31563626--31563664	11	3.2	12	89	7	53	76	5	0	17	0.96
31566866--31567034	40	4.2	40	80	4	173	23	26	21	28	1.99
31574878--31575046	40	4.2	40	80	4	173	23	26	21	28	1.99
31578063--31578189	45	2.9	45	83	8	138	23	27	23	25	2.00
31578518--31578714	43	4.6	43	94	1	342	29	34	24	11	1.90
31578518--31578714	85	2.3	85	94	0	340	29	34	24	11	1.90
31578707--31578790	38	2.2	38	86	0	123	32	27	20	20	1.97
31584925--31584949	13	1.9	13	100	0	50	16	28	40	16	1.89
31605791--31605855	32	2.0	32	93	0	112	41	6	12	40	1.67
31608880--31609053	50	3.5	49	83	7	208	26	17	27	28	1.98
31608871--31609064	50	3.9	49	80	6	194	26	19	26	27	1.99
31619587--31619634	25	1.9	25	82	0	60	33	22	16	27	1.96
31619677--31619737	20	3.0	20	92	0	104	34	11	21	32	1.89
31619787--31619929	24	6.0	24	91	4	209	28	22	22	26	1.99
31619787--31619929	47	3.0	47	90	5	207	28	22	22	26	1.99
31619787--31619930	71	2.0	72	89	4	220	29	22	22	26	1.99
31622989--31623159	93	1.8	93	96	0	315	27	29	22	20	1.98
31622981--31623161	46	3.9	46	81	9	233	27	29	21	20	1.98
31625537--31625625	30	3.0	30	80	8	101	57	15	16	10	1.65
31625537--31625616	15	5.4	15	80	7	92	58	13	17	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31625548--31625625	15	5.2	15	78	9	79	56	15	16	11	1.67
31628572--31628742	93	1.8	93	96	0	315	27	29	22	20	1.98
31628564--31628744	46	3.9	46	81	9	233	27	29	21	20	1.98
31631352--31631458	27	4.0	27	84	4	128	38	19	10	31	1.85
31631447--31631656	27	7.8	26	87	3	244	28	23	8	39	1.83
31631554--31631858	27	11.2	27	76	10	113	37	19	8	35	1.82
31631393--31631667	81	3.4	81	76	6	207	30	23	8	37	1.84
31631635--31631773	54	2.6	55	78	12	169	38	20	7	33	1.81
31631635--31631858	54	4.1	52	76	11	157	39	19	8	32	1.82
31631608--31631864	27	9.4	27	75	9	128	37	18	8	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325