Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  14  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3144402--3144454
15
3.7
15
77
7
56
62
1
1
33
1.17
3144514--3144543
2
15.0
2
92
0
51
53
0
0
46
1.00
3144507--3144543
12
2.9
13
84
15
51
54
2
0
43
1.14
3144554--3144722
3
57.0
3
68
10
62
58
0
9
31
1.34
3144625--3144744
25
4.8
23
71
21
57
61
1
10
26
1.37
3144665--3144746
22
3.6
22
77
9
74
60
3
9
25
1.44
3144630--3144749
12
10.5
12
70
20
87
61
2
9
26
1.39
3144924--3145035
3
36.3
3
81
10
129
60
2
4
32
1.30
3145034--3145188
3
51.7
3
100
0
310
33
0
32
33
1.58
3145197--3145235
15
2.6
15
83
0
51
64
0
5
30
1.15
3147641--3147935
18
16.1
18
72
9
193
38
15
10
35
1.82
3148108--3148213
45
2.4
45
88
0
158
42
18
19
18
1.90
3148098--3148236
45
2.9
49
78
11
144
41
18
20
19
1.91
3148974--3149018
23
2.0
23
100
0
90
40
22
8
28
1.84
3149978--3150022
5
8.6
5
85
9
63
62
0
0
37
0.96
3150047--3150094
24
2.0
25
87
4
71
33
6
10
50
1.62
3154456--3154484
2
14.5
2
100
0
58
0
48
0
51
1.00
3155734--3155798
18
3.5
18
74
24
55
36
3
0
60
1.13
3155737--3155879
67
2.1
69
80
7
159
37
3
2
56
1.28
3157360--3157393
18
1.9
17
88
5
50
32
2
0
64
1.08
3158943--3158970
3
9.3
3
100
0
56
32
0
0
67
0.91
3159209--3159423
107
2.0
107
95
0
385
32
9
14
43
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3164400--3164454
13
4.1
13
72
23
51
27
0
27
45
1.54
3164400--3164451
20
2.6
20
82
8
61
28
0
25
46
1.53
3164400--3164462
20
3.2
20
73
10
58
26
1
26
44
1.63
3168219--3168249
15
2.0
15
93
6
53
25
0
6
67
1.14
3168304--3168367
27
2.4
27
82
10
87
57
1
3
37
1.24
3172287--3172323
18
2.1
18
90
5
58
62
0
13
24
1.31
3175950--3175997
24
2.0
24
87
0
69
50
8
18
22
1.74
3180876--3180904
2
14.5
2
100
0
58
48
0
0
51
1.00
3181192--3181309
60
2.0
59
94
1
209
46
5
12
34
1.66
3182662--3182694
15
2.1
16
94
5
59
60
0
6
33
1.21
3187129--3187163
15
2.3
15
90
0
52
68
0
0
31
0.90
3187429--3187482
23
2.3
24
77
6
65
61
1
0
37
1.07
3202135--3202189
28
2.0
28
82
10
69
56
1
7
34
1.38
3203728--3203784
3
19.0
3
100
0
114
66
0
0
33
0.92
3203820--3203862
18
2.5
17
77
7
50
51
4
0
44
1.22
3207321--3207424
47
2.1
49
85
5
140
41
14
2
41
1.60
3207633--3207681
3
16.3
3
100
0
98
67
0
0
32
0.91
3213991--3214037
23
2.0
23
84
8
60
34
2
2
61
1.20
3215886--3215911
13
2.0
13
100
0
52
92
0
0
7
0.39
3216479--3216503
9
2.8
9
100
0
50
68
0
0
32
0.90
3225207--3225303
48
2.0
48
93
0
167
29
5
22
42
1.75
3225944--3225982
14
2.6
16
88
11
57
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3230903--3230960
31
2.0
31
90
10
95
37
0
0
62
0.96
3230887--3230955
19
3.5
19
72
16
61
34
1
0
63
1.03
3230917--3230967
10
5.1
10
79
6
50
45
0
0
54
0.99
3230927--3230963
19
1.9
19
88
0
56
37
0
0
62
0.96
3233563--3233605
19
2.2
20
84
12
54
51
9
0
39
1.34
3234916--3234966
15
3.4
14
82
12
57
29
1
0
68
1.00
3240322--3240366
4
11.2
4
100
0
90
48
24
0
26
1.51
3241603--3241629
6
4.5
6
100
0
54
0
0
85
14
0.61
3245809--3245859
27
1.9
26
87
0
66
54
0
3
41
1.19
3247698--3247739
14
3.1
14
83
13
61
50
0
0
50
1.00
3247710--3247736
12
2.2
12
100
0
54
48
0
0
51
1.00
3247732--3247784
27
2.0
27
85
7
72
62
3
1
32
1.24
3252612--3252652
19
2.1
20
90
4
66
60
0
0
39
0.96
3252638--3252679
21
2.0
21
86
13
59
78
2
0
19
0.86
3257268--3257328
31
2.0
31
86
0
86
37
8
9
44
1.68
3258404--3258480
30
2.6
30
91
0
118
32
37
18
11
1.87
3258670--3258705
6
6.0
6
96
0
63
16
47
16
19
1.83
3258888--3258929
8
5.2
8
84
15
52
21
0
0
78
0.75
3258887--3258927
18
2.2
19
95
4
75
24
0
0
75
0.80
3268055--3268082
12
2.3
12
100
0
56
39
25
7
28
1.82
3269159--3269412
141
1.8
140
82
6
325
30
21
19
28
1.98
3275558--3275593
16
2.2
16
100
0
72
25
38
5
30
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3281824--3281894
37
1.9
37
94
0
124
29
28
14
28
1.95
3285642--3285671
3
10.0
3
100
0
60
66
0
0
33
0.92
3287217--3287333
51
2.3
51
86
0
162
34
16
23
25
1.95
3289333--3289361
14
2.1
14
100
0
58
51
0
0
48
1.00
3289632--3289679
24
2.0
25
84
12
64
56
2
6
35
1.36
3290908--3290940
2
16.5
2
93
0
57
45
0
3
51
1.16
3309205--3309282
29
2.6
28
80
11
77
64
2
5
28
1.28
3309234--3309295
19
3.2
19
69
2
61
64
1
3
30
1.19
3309226--3309317
38
2.4
40
85
10
129
64
3
6
26
1.33
3309537--3309561
9
2.8
9
100
0
50
20
0
8
72
1.10
3309565--3309607
19
2.2
20
87
4
61
37
6
0
55
1.27
3309556--3309612
29
2.0
29
82
0
69
38
5
0
56
1.22
3316128--3316192
29
2.2
30
86
2
87
50
1
0
47
1.10
3323976--3324006
14
2.2
14
100
0
62
38
12
19
29
1.89
3328671--3328714
16
2.7
17
79
10
56
72
0
2
25
0.96
3328930--3329442
258
2.0
258
96
0
947
34
20
14
30
1.93
3335060--3335113
18
3.3
18
66
28
57
22
7
48
22
1.75
3335056--3335153
30
3.3
30
85
5
144
19
5
48
26
1.69
3341378--3341408
10
3.1
10
100
0
62
12
29
0
58
1.35
3347075--3347120
23
2.0
22
84
12
58
39
2
10
47
1.51
3347331--3347363
2
16.5
2
100
0
66
51
0
48
0
1.00
3350671--3350697
6
4.5
6
100
0
54
14
37
48
0
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3351598--3351631
2
17.0
2
100
0
68
50
0
0
50
1.00
3352364--3352402
18
2.2
18
85
0
51
79
2
2
15
0.95
3353285--3353311
4
6.8
4
100
0
54
51
0
0
48
1.00
3361270--3361307
2
19.0
2
100
0
76
50
0
0
50
1.00
3368658--3368708
21
2.4
21
80
3
57
33
11
9
45
1.74
3370510--3370549
18
2.2
19
86
4
55
37
0
0
62
0.95
3372084--3372175
46
2.0
46
97
0
175
33
6
29
30
1.83
3374651--3374679
13
2.2
13
100
0
58
34
0
0
65
0.93
3375689--3375757
34
2.0
34
97
0
129
33
18
1
46
1.58
3380789--3381016
115
2.0
115
94
0
402
27
29
15
27
1.96
3384869--3384927
28
2.1
28
96
0
109
44
22
10
23
1.83
3389098--3389160
31
2.0
31
90
0
99
41
9
14
34
1.78
3390050--3390083
7
4.9
7
100
0
68
14
0
41
44
1.45
3392479--3393513
516
2.0
520
88
3
1523
37
13
13
36
1.84
3393630--3393662
16
2.1
17
88
11
52
72
0
0
27
0.85
3395338--3395362
12
2.1
12
100
0
50
48
0
28
24
1.52
3397752--3397797
20
2.3
20
78
14
51
41
8
0
50
1.33
3397751--3397825
26
2.8
28
76
15
77
42
6
0
50
1.28
3403646--3403894
104
2.4
101
85
6
331
27
16
22
34
1.95
3404452--3404520
31
2.2
31
89
0
102
28
10
14
46
1.77
3407880--3407917
19
2.0
19
100
0
76
10
15
36
36
1.82
3408136--3408173
14
2.7
14
84
11
51
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3415487--3415534
22
2.1
22
84
7
60
33
0
8
58
1.28
3418560--3418606
17
2.8
17
83
3
51
29
8
19
42
1.80
3420030--3420079
18
2.8
18
74
14
50
30
4
0
66
1.10
3421443--3421661
72
3.0
72
91
0
339
22
35
18
24
1.96
3422835--3422886
18
2.8
19
75
16
56
75
3
7
13
1.17
3423550--3423587
16
2.2
18
86
9
53
26
2
5
65
1.27
3427357--3427534
3
58.0
3
82
6
205
31
4
1
62
1.25
3427724--3427762
15
2.5
15
87
4
51
33
2
2
61
1.23
3434401--3434486
46
1.9
44
90
4
136
32
13
24
29
1.94
3434403--3434527
44
2.8
45
81
4
135
34
14
23
28
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325