genome.fa.s4.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  148  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45289428--45289461	18	2.0	17	88	11	52	47	2	11	38	1.55
45291267--45291377	44	2.5	44	81	12	120	20	28	21	28	1.98
45298797--45298887	45	2.0	45	91	0	146	27	9	24	38	1.87
45301089--45301242	27	5.5	27	82	4	164	31	25	14	28	1.95
45301089--45301242	29	5.5	28	81	6	145	31	25	14	28	1.95
45301089--45301192	55	1.9	55	100	0	208	35	24	13	26	1.92
45309106--45309259	27	5.5	27	82	4	164	31	25	14	28	1.95
45309106--45309259	29	5.5	28	81	6	145	31	25	14	28	1.95
45309106--45309209	55	1.9	55	100	0	208	35	24	13	26	1.92
45309893--45309924	2	16.0	2	93	0	55	46	0	3	50	1.17
45316956--45317109	27	5.5	27	82	4	164	31	25	14	28	1.95
45316956--45317109	29	5.5	28	81	6	145	31	25	14	28	1.95
45316956--45317059	55	1.9	55	100	0	208	35	24	13	26	1.92
45317743--45317776	2	17.0	2	93	0	59	47	0	2	50	1.16
45319070--45319134	30	2.2	30	94	0	112	23	15	41	20	1.89
45320182--45320224	3	14.7	3	81	13	54	37	0	2	60	1.10
45320181--45320222	13	3.2	13	82	3	57	38	0	2	59	1.10
45320182--45320222	16	2.5	18	77	22	54	36	0	2	60	1.10
45321191--45321255	21	3.1	21	75	0	76	21	21	23	33	1.97
45326459--45326708	40	6.2	40	91	1	385	22	28	24	25	1.99
45334635--45334884	40	6.2	40	91	1	385	22	28	24	25	1.99
45347690--45347741	22	2.4	22	86	0	68	46	23	7	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45349217--45349351	29	4.7	29	86	3	155	23	31	15	29	1.95
45349163--45349352	58	3.3	58	77	4	179	24	33	16	26	1.96
45357182--45357316	29	4.7	29	86	3	155	23	31	15	29	1.95
45357128--45357317	58	3.3	58	77	4	179	24	33	16	26	1.96
45359109--45359146	18	2.1	19	90	5	60	55	23	0	21	1.44
45366492--45366637	43	3.4	43	82	3	177	29	27	15	27	1.96
45368391--45368443	22	2.4	22	87	6	72	43	22	5	28	1.76
45370616--45370652	6	6.2	6	93	0	65	48	0	51	0	1.00
45370866--45370910	20	2.3	20	88	3	74	26	4	2	66	1.22
45372016--45372060	21	2.2	20	84	8	54	20	0	31	48	1.49
45372039--45372072	16	2.2	16	89	5	52	14	0	32	52	1.42
45372017--45372087	37	1.9	37	91	0	115	19	0	30	49	1.49
45372128--45372296	82	2.1	81	83	3	205	17	21	25	35	1.95
45372128--45372264	41	3.3	41	91	0	211	17	21	26	34	1.96
45372771--45372818	25	1.9	25	86	0	69	64	2	6	27	1.28
45372994--45373041	20	2.4	20	73	13	53	64	0	10	25	1.25
45373092--45373135	3	14.7	3	86	9	63	65	0	4	29	1.12
45373434--45373475	13	3.3	13	80	6	59	9	0	50	40	1.35
45373427--45373475	25	1.9	26	91	4	82	14	0	44	40	1.45
45373752--45374339	132	4.5	132	83	5	685	26	25	19	29	1.98
45373752--45374339	263	2.2	261	86	4	799	26	25	19	29	1.98
45374263--45374357	44	2.1	45	80	5	104	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45374282--45374754	44	10.7	43	68	7	198	26	22	20	30	1.98
45374216--45374847	177	3.6	177	89	0	933	26	21	20	31	1.98
45374211--45374850	354	1.8	354	90	0	1028	26	21	20	31	1.98
45374685--45374777	44	2.1	44	85	0	123	26	22	22	27	1.99
45376065--45376096	1	32.0	1	93	0	55	0	3	0	96	0.20
45378600--45378770	93	1.8	93	94	0	306	28	28	21	22	1.99
45378592--45378767	46	3.8	46	77	12	207	28	27	21	22	1.99
45379193--45379252	30	2.0	30	90	0	93	30	25	8	36	1.85
45381286--45381352	32	2.1	32	91	0	107	28	26	10	34	1.90
45381424--45381586	42	3.9	42	80	6	177	32	30	16	20	1.95
45387785--45388131	3	112.3	3	65	18	63	60	3	8	27	1.42
45387793--45387885	32	2.9	32	82	14	104	60	0	8	31	1.27
45387807--45387885	35	2.4	34	85	8	101	59	0	8	31	1.28
45387872--45387979	24	4.5	24	73	16	84	59	3	11	25	1.48
45388057--45388131	20	4.0	18	77	19	73	65	0	5	29	1.15
45388659--45388729	27	2.5	30	82	11	96	59	4	4	32	1.36
45390228--45390634	177	2.3	177	87	0	582	28	21	19	29	1.98
45390426--45390513	45	2.0	45	90	4	142	29	20	18	31	1.96
45390472--45390766	132	2.2	132	92	0	500	28	22	20	29	1.98
45398240--45398310	29	2.4	29	88	4	99	26	16	30	25	1.97
45405339--45405576	127	1.9	127	90	3	334	39	22	13	24	1.90
45406190--45406260	27	2.5	30	80	11	87	57	4	5	32	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45408101--45408144	18	2.4	19	84	3	63	34	0	0	65	0.93
45408056--45408145	18	4.4	20	67	19	60	38	0	1	60	1.04
45409649--45409700	16	3.3	17	82	12	58	59	0	0	40	0.97
45417951--45417983	2	16.5	2	100	0	66	51	0	0	48	1.00
45423130--45423267	49	2.8	49	83	3	170	25	15	28	30	1.96
45423121--45423268	50	3.0	50	82	3	183	24	14	30	31	1.94
45426831--45426892	30	2.1	30	100	0	124	33	6	12	46	1.68
45436853--45437028	46	3.8	46	76	10	178	21	21	27	29	1.98
45436849--45437021	93	1.9	93	90	0	274	21	21	28	28	1.99
45438665--45438746	39	2.1	39	93	0	137	41	21	7	29	1.80
45440348--45440683	168	2.0	167	96	0	618	37	13	13	34	1.85
45449413--45449450	17	2.2	17	86	9	51	68	5	2	23	1.23
45449789--45449860	35	2.1	35	100	0	144	41	25	5	27	1.77
45449878--45449934	27	2.1	28	90	3	89	42	7	7	43	1.58
45450033--45450064	17	2.0	17	88	11	50	59	6	3	31	1.38
45450111--45450170	31	1.9	31	100	0	120	48	8	0	43	1.33
45450225--45450262	17	2.2	17	86	9	51	68	5	2	23	1.23
45451202--45451275	33	2.2	34	74	18	82	43	4	0	52	1.20
45451208--45451315	31	3.4	33	81	8	118	50	4	0	45	1.22
45451274--45451341	26	2.5	28	79	15	72	63	5	1	29	1.27
45451306--45451333	11	2.5	11	100	0	56	64	7	0	28	1.20
45451269--45451429	15	10.9	14	72	19	82	63	2	3	31	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45451274--45451479	40	5.1	40	72	19	126	60	1	4	33	1.27
45451318--45451399	43	1.9	43	83	11	107	64	1	3	30	1.18
45451328--45451486	20	8.1	20	69	20	70	60	0	5	33	1.20
45451453--45451493	14	2.9	14	81	3	55	56	0	0	43	0.99
45455241--45455278	11	3.6	11	86	10	53	42	0	0	57	0.98
45455239--45455305	14	4.6	15	76	12	59	44	0	0	55	0.99
45455271--45455305	16	2.2	16	90	5	54	48	0	0	51	1.00
45455469--45455507	21	1.9	21	89	5	62	30	23	10	35	1.88
45455584--45455611	14	2.0	14	100	0	56	35	7	21	35	1.81
45458275--45458313	21	1.9	21	94	5	71	30	25	10	33	1.89
45468183--45468397	49	4.4	49	96	0	376	29	9	32	29	1.88
45468499--45468583	37	2.3	37	95	0	152	24	20	34	21	1.97
45471214--45471508	50	5.9	50	80	2	286	25	16	27	30	1.97
45471271--45471453	101	1.8	101	90	0	294	25	18	27	28	1.98
45471219--45471505	151	1.9	152	86	2	416	25	17	27	30	1.97
45471220--45471540	150	2.1	152	83	2	387	24	16	28	30	1.97
45471706--45471735	16	1.9	15	93	6	51	43	0	23	33	1.54
45476408--45476516	37	2.9	37	90	0	164	27	29	18	24	1.98
45476662--45476894	48	4.8	48	91	3	378	31	25	6	36	1.81
45476864--45477104	47	5.1	47	92	0	374	26	28	11	33	1.91
45476957--45477075	22	5.1	22	63	25	66	24	28	13	33	1.93
45478572--45478607	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45481366--45481422	30	1.9	30	92	3	98	28	22	7	42	1.80
45486888--45487068	78	2.3	80	84	6	235	24	22	28	24	1.99
45486889--45487071	40	4.6	39	80	10	212	24	21	28	25	1.99
45495030--45495210	78	2.3	80	84	6	235	24	22	28	24	1.99
45495031--45495213	40	4.6	39	80	10	212	24	21	28	25	1.99
45507714--45507745	14	2.4	13	94	5	55	6	9	0	84	0.78
45509048--45509084	3	12.3	3	100	0	74	32	0	0	67	0.91
45520355--45520581	111	2.0	111	98	0	436	40	17	14	28	1.88
45520777--45520903	44	2.9	44	81	4	132	30	14	22	32	1.94
45520699--45520950	133	1.9	133	83	1	326	29	15	24	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325