Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  127  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38292873--38292905
13
2.6
13
90
4
50
48
12
0
39
1.40
38294933--38294976
20
2.2
20
84
8
54
61
4
15
18
1.50
38296346--38296379
2
17.0
2
88
11
52
47
0
2
50
1.16
38304572--38304969
55
7.5
53
76
14
333
23
23
17
35
1.95
38304572--38304977
54
7.6
54
76
12
376
23
23
16
36
1.94
38304584--38305030
209
2.1
209
94
0
786
24
23
16
36
1.94
38304956--38305124
47
3.6
47
92
0
275
26
23
14
36
1.92
38305147--38305258
45
2.4
45
80
5
118
20
23
19
36
1.95
38305264--38305347
44
1.9
44
85
4
116
25
23
13
38
1.91
38307099--38307130
15
2.1
15
94
0
55
34
9
21
34
1.86
38308815--38308863
25
2.0
25
88
8
73
18
22
30
28
1.97
38315857--38316013
78
2.0
78
92
0
260
30
19
21
28
1.97
38325126--38325175
20
2.5
20
83
6
66
42
14
14
30
1.84
38328400--38328439
16
2.5
16
88
8
55
55
0
2
42
1.13
38328399--38328448
17
3.0
17
80
11
50
58
0
2
40
1.10
38328420--38328509
19
4.6
19
79
9
92
67
2
1
28
1.09
38328420--38328509
20
4.6
19
79
8
83
67
2
1
28
1.09
38328429--38328509
40
2.0
40
90
0
126
67
2
1
28
1.11
38328743--38328814
10
7.7
9
70
23
51
30
1
2
65
1.15
38328743--38328818
20
3.9
20
76
13
70
32
1
2
63
1.17
38328734--38328807
10
7.6
10
69
22
50
35
1
2
60
1.19
38328763--38328824
27
2.2
28
85
5
81
37
0
0
62
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38331660--38331710
22
2.3
22
80
6
68
35
1
1
60
1.19
38333331--38333377
3
15.7
3
95
0
85
34
0
2
63
1.06
38335283--38335336
27
2.0
27
85
7
74
66
1
0
31
1.02
38337197--38337233
17
2.2
17
90
4
58
67
8
0
24
1.17
38337385--38337437
23
2.3
23
86
0
79
77
11
5
5
1.11
38341936--38342072
44
3.1
44
82
3
150
44
14
20
20
1.86
38341981--38342149
44
3.8
44
76
12
157
46
11
18
23
1.81
38345426--38345774
48
7.3
48
80
0
322
28
18
28
24
1.98
38345444--38345776
96
3.5
95
81
0
396
28
18
29
23
1.98
38353193--38353541
48
7.3
48
76
7
298
29
19
26
25
1.98
38353193--38353540
144
2.4
144
81
5
373
29
19
26
25
1.98
38360144--38360186
22
1.9
23
85
4
61
34
6
0
58
1.25
38362071--38362107
16
2.3
17
81
13
51
35
0
8
56
1.29
38362077--38362106
16
1.9
16
93
6
53
33
0
10
56
1.32
38377423--38377457
5
6.8
5
96
3
61
20
0
0
80
0.72
38377871--38377913
21
2.0
21
81
0
50
39
20
4
34
1.74
38380535--38380717
39
4.6
39
87
0
240
24
22
30
22
1.99
38382440--38382487
19
2.5
19
93
0
78
35
4
18
41
1.70
38385164--38385309
48
3.0
48
92
0
238
37
6
24
31
1.80
38385445--38385595
37
4.1
37
91
0
239
25
18
31
25
1.98
38388155--38388506
108
3.2
108
80
7
325
32
18
19
29
1.96
38393265--38393482
40
5.5
40
88
3
300
26
27
22
23
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38401328--38401505
40
4.5
40
90
3
254
24
26
24
24
2.00
38404641--38404943
49
6.3
49
92
1
447
31
8
31
29
1.86
38410774--38410977
75
2.7
74
88
3
291
58
0
15
25
1.43
38410773--38410977
27
8.1
26
68
17
126
58
0
15
25
1.43
38410773--38410974
102
2.0
102
81
10
243
58
0
15
24
1.43
38410929--38411008
27
3.1
27
81
10
71
53
2
21
22
1.57
38410970--38411017
23
2.1
23
100
0
96
54
4
16
25
1.60
38410970--38411035
23
2.7
23
86
9
60
54
3
16
25
1.56
38410738--38411081
48
7.1
48
68
19
189
56
1
15
25
1.48
38411110--38411143
17
1.9
18
88
5
52
70
0
0
29
0.87
38411091--38411172
43
1.9
43
85
7
114
63
0
6
30
1.19
38411170--38411269
5
18.6
5
71
13
58
57
1
23
19
1.47
38411197--38411269
16
4.6
16
85
0
92
58
1
20
19
1.46
38411179--38411270
32
2.8
32
85
5
103
56
1
23
18
1.48
38411170--38411269
11
9.3
10
70
15
58
57
1
23
19
1.47
38411176--38411270
16
5.8
16
78
8
84
56
1
23
18
1.48
38411532--38411606
36
2.1
36
82
7
89
68
4
8
20
1.32
38412005--38412159
73
2.1
73
97
0
292
35
5
7
51
1.53
38412128--38412166
13
3.0
13
85
11
53
25
2
5
66
1.25
38415908--38415936
15
1.9
15
100
0
58
68
6
3
20
1.27
38416534--38416826
108
2.7
107
83
3
376
30
15
19
34
1.93
38417930--38417970
20
2.1
18
86
13
55
43
4
2
48
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38418641--38418701
25
2.5
24
84
10
72
50
6
1
40
1.38
38418860--38418897
4
9.5
4
100
0
76
50
23
0
26
1.50
38419277--38419345
30
2.3
29
78
14
79
31
5
1
60
1.29
38422412--38422475
32
2.0
32
100
0
128
37
21
12
28
1.90
38422857--38422891
7
4.9
7
93
6
61
74
0
11
14
1.08
38422926--38422963
6
6.5
6
93
6
69
68
31
0
0
0.90
38422920--38422959
17
2.3
17
86
4
53
70
27
0
2
1.01
38422927--38422963
11
3.3
11
96
3
65
67
32
0
0
0.91
38429816--38429864
21
2.3
21
82
3
62
22
34
30
12
1.91
38434058--38434099
22
1.9
22
85
9
59
33
0
2
64
1.07
38434148--38434183
16
2.2
16
90
0
54
27
0
2
69
1.02
38436778--38436870
48
1.9
48
95
0
168
26
20
18
34
1.96
38443921--38443960
21
2.0
21
90
5
64
20
27
40
12
1.88
38445281--38445410
46
2.8
46
86
4
165
26
24
18
30
1.98
38457957--38457991
15
2.3
15
90
9
54
14
0
17
68
1.21
38469870--38469921
21
2.5
21
96
0
95
40
11
25
23
1.88
38473429--38473486
29
2.0
30
86
3
82
39
6
27
25
1.81
38478267--38478418
40
3.8
39
77
5
135
25
22
28
24
1.99
38478322--38478458
40
3.5
38
82
5
148
26
23
27
22
1.99
38478267--38478451
79
2.3
81
82
7
209
24
23
27
24
2.00
38487490--38487527
20
1.9
20
88
0
58
44
0
2
52
1.14
38490607--38490648
20
2.0
21
90
4
68
30
30
2
35
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38497680--38497820
57
2.4
58
82
5
162
32
21
19
26
1.97
38505335--38505502
40
4.2
40
76
3
160
25
26
22
25
2.00
38507993--38508235
24
10.1
24
95
0
405
35
25
18
20
1.95
38510871--38510919
25
2.0
25
95
0
89
28
16
22
32
1.95
38510871--38510930
25
2.4
25
88
5
86
26
20
21
31
1.98
38510884--38510942
25
2.4
25
82
5
66
30
16
22
30
1.96
38513056--38513168
48
2.4
48
86
3
147
32
31
17
17
1.94
38522940--38523103
71
2.3
71
98
0
319
19
28
17
34
1.95
38522940--38523137
71
2.8
70
90
3
249
21
28
17
33
1.95
38529543--38529713
39
4.3
39
85
5
202
25
28
21
24
1.99
38529543--38529766
40
5.7
40
82
6
226
26
28
20
24
1.99
38542009--38542175
46
3.7
45
84
4
194
26
20
31
22
1.98
38541958--38542169
92
2.3
90
82
4
246
26
19
31
21
1.98
38542009--38542212
46
4.5
43
80
11
162
25
20
30
23
1.98
38553304--38553357
25
2.1
26
83
10
67
20
27
18
33
1.96
38553911--38554075
82
2.0
82
95
0
294
26
20
9
43
1.81
38559769--38559841
15
4.9
15
82
0
74
56
16
13
13
1.68
38563555--38563805
46
5.4
45
75
10
177
24
27
18
29
1.98
38563540--38563808
47
5.8
48
75
11
197
24
27
18
28
1.98
38563540--38563712
93
1.9
94
84
6
235
24
27
19
28
1.98
38569012--38569036
2
12.5
2
100
0
50
52
0
0
48
1.00
38569857--38569906
18
2.7
18
84
9
57
40
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38573809--38573870
25
2.5
25
87
10
83
22
22
27
27
1.99
38575635--38575784
42
3.5
42
78
8
140
27
16
23
33
1.95
38588234--38588306
35
2.1
35
100
0
146
39
19
5
35
1.75
38591399--38591646
50
4.9
50
82
1
289
30
25
17
26
1.97
38591399--38591642
101
2.4
100
84
1
317
29
25
17
26
1.97
38610466--38610543
29
2.7
29
83
0
102
26
17
33
21
1.96
38618290--38618391
29
3.5
29
90
0
150
27
15
33
23
1.95
38620344--38620397
25
2.2
25
100
0
108
14
25
33
25
1.95
38620777--38620835
30
2.0
30
93
0
100
23
35
22
18
1.96
38622738--38622954
48
4.5
48
81
4
231
27
30
16
25
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325